Wall clock time and date at job start Tue Mar 31 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.00147 * 2 1 4 4 C 1.54331 * 109.88075 * 121.09306 * 2 1 3 5 5 H 1.08992 * 110.72097 * 260.14873 * 4 2 1 6 6 N 1.46500 * 110.72027 * 23.24636 * 4 2 1 7 7 C 1.34772 * 120.00248 * 202.55794 * 6 4 2 8 8 O 1.21283 * 119.99806 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00436 * 180.02562 * 7 6 4 10 10 S 1.80997 * 109.47347 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99876 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99747 * 0.02562 * 11 10 9 13 13 C 1.38794 * 119.99484 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00466 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99391 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47200 * 269.99674 * 15 13 11 17 17 H 1.48497 * 109.47555 * 30.00096 * 15 13 11 18 18 H 1.48497 * 109.47004 * 150.00155 * 15 13 11 19 19 C 1.55155 * 103.10134 * 141.69930 * 4 2 1 20 20 C 1.54914 * 101.58189 * 324.40874 * 19 4 2 21 21 N 1.47424 * 104.82966 * 37.01138 * 20 19 4 22 22 C 1.34772 * 125.64408 * 155.83877 * 21 20 19 23 23 O 1.21628 * 119.99940 * 178.10393 * 22 21 20 24 24 C 1.47261 * 120.00655 * 358.10146 * 22 21 20 25 25 C 1.46690 * 126.93702 * 7.79828 * 24 22 21 26 26 C 1.34489 * 106.33209 * 179.89036 * 25 24 22 27 27 N 1.36448 * 108.85615 * 0.37894 * 26 25 24 28 28 H 0.96997 * 124.85357 * 179.76886 * 27 26 25 29 29 C 1.34657 * 110.29650 * 359.75166 * 27 26 25 30 30 H 1.08999 * 109.47455 * 298.90686 * 1 2 3 31 31 H 1.09000 * 109.46852 * 58.90824 * 1 2 3 32 32 H 1.08999 * 109.46934 * 178.90488 * 1 2 3 33 33 H 0.97000 * 120.00070 * 22.56357 * 6 4 2 34 34 H 1.09001 * 109.47209 * 59.99876 * 9 7 6 35 35 H 1.09003 * 109.46733 * 300.00413 * 9 7 6 36 36 H 0.97007 * 119.99941 * 180.02562 * 14 13 11 37 37 H 1.08997 * 111.00633 * 82.48328 * 19 4 2 38 38 H 1.09003 * 111.00668 * 206.29567 * 19 4 2 39 39 H 1.09002 * 110.36167 * 155.84646 * 20 19 4 40 40 H 1.08994 * 110.36637 * 278.05849 * 20 19 4 41 41 H 1.08003 * 126.83700 * 0.02562 * 25 24 22 42 42 H 1.08002 * 125.57578 * 180.09327 * 26 25 24 43 43 H 1.08008 * 125.80254 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3500 -0.0461 2.0213 6 7 1.0471 -1.6855 1.7476 7 6 1.0897 -2.0939 3.0312 8 8 1.9621 -1.6863 3.7686 9 6 0.0535 -3.0572 3.5503 10 16 0.3780 -3.4096 5.2957 11 6 -0.9433 -4.5256 5.6332 12 1 -1.6418 -4.7873 4.8523 13 6 -1.0855 -5.0689 6.9025 14 7 -0.2338 -4.7502 7.8541 15 14 -2.4857 -6.2525 7.2601 16 1 -3.6723 -5.4897 7.7243 17 1 -2.8303 -6.9998 6.0240 18 1 -2.0679 -7.2089 8.3164 19 6 3.2896 -1.5141 0.6970 20 6 2.8201 -1.8832 -0.7324 21 7 2.0353 -0.7198 -1.1839 22 6 1.8162 -0.3704 -2.4670 23 8 1.1216 0.5943 -2.7245 24 6 2.4178 -1.1564 -3.5573 25 6 3.1413 -2.4264 -3.4332 26 6 3.5068 -2.7769 -4.6791 27 7 3.0730 -1.8213 -5.5511 28 1 3.2145 -1.8410 -6.5105 29 6 2.4201 -0.8470 -4.8895 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 0.3492 -2.0113 1.1579 34 1 0.0992 -3.9835 2.9776 35 1 -0.9375 -2.6149 3.4474 36 1 -0.3331 -5.1303 8.7410 37 1 4.1668 -0.8678 0.6654 38 1 3.4874 -2.4089 1.2872 39 1 3.6789 -2.0381 -1.3855 40 1 2.1968 -2.7771 -0.7079 41 1 3.3392 -2.9726 -2.5226 42 1 4.0578 -3.6667 -4.9454 43 1 1.9742 0.0301 -5.3352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735301809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:54 Heat of formation + Delta-G solvation = -5.782942 kcal Electronic energy + Delta-G solvation = -26246.777147 eV Core-core repulsion = 22419.680943 eV Total energy + Delta-G solvation = -3827.096203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54868 -40.41249 -38.88699 -37.33274 -34.05403 -32.42643 -32.07489 -31.33191 -30.47136 -29.51615 -28.61684 -25.98882 -25.45004 -24.07849 -22.29285 -21.13133 -20.93009 -19.84192 -19.40748 -18.33257 -17.89205 -16.94873 -16.55515 -16.12396 -15.45223 -15.10571 -14.96477 -14.79874 -14.55750 -14.32445 -13.99853 -13.86150 -13.82146 -13.58849 -13.30004 -13.13452 -12.94699 -12.57398 -12.43435 -12.39781 -12.01579 -11.71359 -11.36213 -11.26672 -11.06034 -11.02340 -10.95532 -10.75051 -9.97644 -9.80947 -9.41314 -9.22929 -9.06736 -8.93245 -8.89935 -8.63394 -8.23380 -6.49453 -6.21362 -3.91731 1.48748 2.06574 2.65812 2.97238 3.04343 3.07057 3.22846 3.28321 3.31941 3.35590 3.71460 4.19882 4.21173 4.38710 4.55796 4.72670 4.82696 4.89055 4.94708 5.03950 5.06988 5.13332 5.13929 5.23361 5.38018 5.47735 5.50729 5.57063 5.64833 5.69876 5.81464 5.86942 5.89262 5.93837 6.11648 6.14932 6.24124 6.33308 6.53651 6.64064 7.01621 7.40621 7.60108 7.69380 8.13464 8.35680 8.60180 9.24163 10.85989 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020746 B = 0.002178 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.322620 B =12853.684926 C =13219.015009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.088 0.912 4 C 0.139 3.861 5 H 0.109 0.891 6 N -0.729 5.729 7 C 0.534 3.466 8 O -0.516 6.516 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.282 1.282 19 C -0.146 4.146 20 C 0.090 3.910 21 N -0.609 5.609 22 C 0.607 3.393 23 O -0.552 6.552 24 C -0.230 4.230 25 C -0.181 4.181 26 C -0.018 4.018 27 N -0.554 5.554 28 H 0.418 0.582 29 C 0.074 3.926 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.828 5.582 -27.945 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.106 0.894 4 C 0.033 3.967 5 H 0.127 0.873 6 N -0.386 5.386 7 C 0.320 3.680 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.208 1.208 19 C -0.186 4.186 20 C -0.032 4.032 21 N -0.343 5.343 22 C 0.399 3.601 23 O -0.432 6.432 24 C -0.240 4.240 25 C -0.204 4.204 26 C -0.146 4.146 27 N -0.148 5.148 28 H 0.254 0.746 29 C -0.063 4.063 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.175 0.825 42 H 0.187 0.813 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.988 6.735 -26.848 29.102 hybrid contribution -2.132 -1.576 -1.317 2.961 sum 6.856 5.159 -28.165 29.443 Atomic orbital electron populations 1.22072 0.94205 1.02243 1.03447 1.21892 0.95279 0.96388 0.83620 0.89357 1.21820 0.88257 0.91755 0.94871 0.87286 1.46173 1.31988 1.48352 1.12065 1.20315 0.85696 0.81052 0.80905 1.90704 1.36468 1.55604 1.56194 1.23535 1.00172 1.00218 1.06520 1.85381 1.40295 1.59113 0.98458 1.22866 1.14923 1.31152 0.99404 0.90948 1.24987 0.96860 0.96629 0.95114 1.70014 1.35190 1.42336 1.02739 0.86175 0.81155 0.80029 0.78180 1.20273 1.19713 1.20768 1.23265 0.97968 1.02268 0.95060 1.22803 0.95847 0.88788 0.95793 1.48443 1.52694 1.28558 1.04645 1.17004 0.79529 0.83064 0.80537 1.90764 1.39929 1.29158 1.83325 1.20296 1.11265 0.99580 0.92861 1.22662 1.03274 0.97026 0.97475 1.21890 1.06674 0.96364 0.89683 1.41678 1.44374 1.18647 1.10151 0.74593 1.21815 0.98399 0.94307 0.91766 0.91058 0.90803 0.92481 0.76376 0.89270 0.89237 0.92193 0.89651 0.88938 0.88984 0.91166 0.82486 0.81347 0.80637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.48 37.16 0.32 -1.43 16 2 C 0.13 1.40 3.46 -66.70 -0.23 1.17 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.14 1.58 3.13 -66.09 -0.21 1.37 16 5 H 0.11 1.37 7.62 -51.93 -0.40 0.98 16 6 N -0.73 -9.31 4.56 -52.03 -0.24 -9.54 16 7 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 8 O -0.52 -11.10 15.55 5.55 0.09 -11.01 16 9 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.44 -0.10 1.99 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 15 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.15 -1.42 6.77 -24.58 -0.17 -1.59 16 20 C 0.09 0.77 5.31 -2.53 -0.01 0.76 16 21 N -0.61 -6.41 3.08 -163.98 -0.51 -6.92 16 22 C 0.61 7.39 7.65 -12.60 -0.10 7.30 16 23 O -0.55 -8.32 15.93 5.25 0.08 -8.24 16 24 C -0.23 -2.26 6.20 -103.35 -0.64 -2.90 16 25 C -0.18 -1.38 9.27 -37.50 -0.35 -1.73 16 26 C -0.02 -0.10 11.89 -16.82 -0.20 -0.30 16 27 N -0.55 -2.67 5.90 -12.84 -0.08 -2.75 16 28 H 0.42 0.58 8.96 -40.82 -0.37 0.22 16 29 C 0.07 0.56 11.70 -16.84 -0.20 0.36 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.91 6.87 -51.93 -0.36 0.55 16 32 H 0.06 0.58 6.21 -51.93 -0.32 0.26 16 33 H 0.40 4.38 6.38 -40.82 -0.26 4.12 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.67 5.15 -51.93 -0.27 0.40 16 40 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.16 1.01 5.08 -52.48 -0.27 0.75 16 42 H 0.17 0.45 8.06 -52.49 -0.42 0.02 16 43 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -37.02 367.97 -8.64 -45.66 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.58 Total: 3.28 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.45 Total: -3.26 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.08 Total: -44.49 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.17 Total: -19.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.02 -8.64 -45.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735301809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.873 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds