Wall clock time and date at job start Tue Mar 31 2020 20:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.00147 * 2 1 4 4 C 1.54331 * 109.88075 * 121.09306 * 2 1 3 5 5 H 1.08992 * 110.72097 * 260.14873 * 4 2 1 6 6 N 1.46500 * 110.72027 * 23.24636 * 4 2 1 7 7 C 1.34772 * 120.00248 * 202.55794 * 6 4 2 8 8 O 1.21283 * 119.99806 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00436 * 180.02562 * 7 6 4 10 10 S 1.80997 * 109.47347 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99876 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99747 * 0.02562 * 11 10 9 13 13 C 1.38794 * 119.99484 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00466 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99391 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47200 * 269.99674 * 15 13 11 17 17 H 1.48497 * 109.47555 * 30.00096 * 15 13 11 18 18 H 1.48497 * 109.47004 * 150.00155 * 15 13 11 19 19 C 1.55155 * 103.10134 * 141.69930 * 4 2 1 20 20 C 1.54914 * 101.58189 * 324.40874 * 19 4 2 21 21 N 1.47424 * 104.82966 * 37.01138 * 20 19 4 22 22 C 1.34772 * 125.64408 * 155.83877 * 21 20 19 23 23 O 1.21628 * 119.99940 * 178.10393 * 22 21 20 24 24 C 1.47261 * 120.00655 * 358.10146 * 22 21 20 25 25 C 1.46690 * 126.93702 * 7.79828 * 24 22 21 26 26 C 1.34489 * 106.33209 * 179.89036 * 25 24 22 27 27 N 1.36448 * 108.85615 * 0.37894 * 26 25 24 28 28 H 0.96997 * 124.85357 * 179.76886 * 27 26 25 29 29 C 1.34657 * 110.29650 * 359.75166 * 27 26 25 30 30 H 1.08999 * 109.47455 * 298.90686 * 1 2 3 31 31 H 1.09000 * 109.46852 * 58.90824 * 1 2 3 32 32 H 1.08999 * 109.46934 * 178.90488 * 1 2 3 33 33 H 0.97000 * 120.00070 * 22.56357 * 6 4 2 34 34 H 1.09001 * 109.47209 * 59.99876 * 9 7 6 35 35 H 1.09003 * 109.46733 * 300.00413 * 9 7 6 36 36 H 0.97007 * 119.99941 * 180.02562 * 14 13 11 37 37 H 1.08997 * 111.00633 * 82.48328 * 19 4 2 38 38 H 1.09003 * 111.00668 * 206.29567 * 19 4 2 39 39 H 1.09002 * 110.36167 * 155.84646 * 20 19 4 40 40 H 1.08994 * 110.36637 * 278.05849 * 20 19 4 41 41 H 1.08003 * 126.83700 * 0.02562 * 25 24 22 42 42 H 1.08002 * 125.57578 * 180.09327 * 26 25 24 43 43 H 1.08008 * 125.80254 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3500 -0.0461 2.0213 6 7 1.0471 -1.6855 1.7476 7 6 1.0897 -2.0939 3.0312 8 8 1.9621 -1.6863 3.7686 9 6 0.0535 -3.0572 3.5503 10 16 0.3780 -3.4096 5.2957 11 6 -0.9433 -4.5256 5.6332 12 1 -1.6418 -4.7873 4.8523 13 6 -1.0855 -5.0689 6.9025 14 7 -0.2338 -4.7502 7.8541 15 14 -2.4857 -6.2525 7.2601 16 1 -3.6723 -5.4897 7.7243 17 1 -2.8303 -6.9998 6.0240 18 1 -2.0679 -7.2089 8.3164 19 6 3.2896 -1.5141 0.6970 20 6 2.8201 -1.8832 -0.7324 21 7 2.0353 -0.7198 -1.1839 22 6 1.8162 -0.3704 -2.4670 23 8 1.1216 0.5943 -2.7245 24 6 2.4178 -1.1564 -3.5573 25 6 3.1413 -2.4264 -3.4332 26 6 3.5068 -2.7769 -4.6791 27 7 3.0730 -1.8213 -5.5511 28 1 3.2145 -1.8410 -6.5105 29 6 2.4201 -0.8470 -4.8895 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 0.3492 -2.0113 1.1579 34 1 0.0992 -3.9835 2.9776 35 1 -0.9375 -2.6149 3.4474 36 1 -0.3331 -5.1303 8.7410 37 1 4.1668 -0.8678 0.6654 38 1 3.4874 -2.4089 1.2872 39 1 3.6789 -2.0381 -1.3855 40 1 2.1968 -2.7771 -0.7079 41 1 3.3392 -2.9726 -2.5226 42 1 4.0578 -3.6667 -4.9454 43 1 1.9742 0.0301 -5.3352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735301809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:53 Heat of formation + Delta-G solvation = -32.033580 kcal Electronic energy + Delta-G solvation = -26247.915460 eV Core-core repulsion = 22419.680943 eV Total energy + Delta-G solvation = -3828.234516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.14366 -41.34983 -40.07528 -38.39447 -35.18716 -34.56417 -32.93732 -32.25688 -31.35043 -30.19764 -29.78085 -27.65753 -26.83253 -24.87357 -23.17337 -22.03126 -21.70958 -20.83046 -19.98788 -19.85328 -19.00159 -18.05776 -17.77579 -17.15104 -16.86090 -16.50694 -16.33947 -15.99564 -15.70521 -15.16024 -14.98237 -14.88581 -14.61404 -14.48111 -14.38550 -14.31878 -14.14976 -13.74891 -13.50936 -13.25432 -13.14115 -12.99585 -12.88237 -12.62203 -12.58329 -12.23678 -12.20764 -11.83114 -11.68553 -11.12676 -10.92283 -10.89379 -10.24818 -10.12004 -9.83319 -9.65068 -9.21787 -8.63226 -8.32889 -6.09948 0.80679 1.28459 1.43377 1.48155 1.58402 1.59097 1.63652 1.93650 2.25355 2.30695 2.51298 2.57505 3.01266 3.30533 3.34904 3.54382 3.94604 3.97681 4.05040 4.12910 4.15980 4.25338 4.31268 4.35889 4.44441 4.53257 4.54574 4.59059 4.67335 4.78285 4.92442 5.01046 5.03350 5.04173 5.10082 5.22433 5.40802 5.44024 5.50925 5.79439 6.00544 6.21756 6.46612 6.56894 6.71154 7.08786 7.24604 7.26839 8.76081 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020746 B = 0.002178 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.322620 B =12853.684926 C =13219.015009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.087 0.913 4 C 0.139 3.861 5 H 0.097 0.903 6 N -0.704 5.704 7 C 0.541 3.459 8 O -0.558 6.558 9 C -0.131 4.131 10 S -0.145 6.145 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.258 1.258 18 H -0.278 1.278 19 C -0.140 4.140 20 C 0.096 3.904 21 N -0.608 5.608 22 C 0.600 3.400 23 O -0.593 6.593 24 C -0.266 4.266 25 C -0.200 4.200 26 C -0.006 4.006 27 N -0.538 5.538 28 H 0.435 0.565 29 C 0.073 3.927 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.166 0.834 42 H 0.203 0.797 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 3.986 -30.520 31.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.105 0.895 4 C 0.033 3.967 5 H 0.115 0.885 6 N -0.359 5.359 7 C 0.327 3.673 8 O -0.436 6.436 9 C -0.283 4.283 10 S 0.082 5.918 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.182 1.182 18 H -0.203 1.203 19 C -0.179 4.179 20 C -0.026 4.026 21 N -0.341 5.341 22 C 0.394 3.606 23 O -0.476 6.476 24 C -0.276 4.276 25 C -0.223 4.223 26 C -0.134 4.134 27 N -0.133 5.133 28 H 0.275 0.725 29 C -0.066 4.066 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.183 0.817 42 H 0.220 0.780 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.735 5.124 -29.493 31.183 hybrid contribution -1.995 -1.017 -0.681 2.340 sum 6.739 4.107 -30.175 31.190 Atomic orbital electron populations 1.22008 0.94230 1.02415 1.02805 1.21798 0.95217 0.96291 0.83512 0.89539 1.21882 0.88603 0.91507 0.94714 0.88466 1.45887 1.32269 1.47391 1.10396 1.19955 0.84725 0.80664 0.81976 1.90699 1.37999 1.57215 1.57643 1.23379 1.01596 1.01921 1.01357 1.85531 1.41360 1.59689 1.05244 1.23203 1.15004 1.31154 1.00024 0.90035 1.26096 0.99711 0.98505 0.94823 1.70175 1.37382 1.43839 1.03284 0.84981 0.77311 0.77441 0.78417 1.19463 1.18235 1.20300 1.23223 0.97474 1.01806 0.95422 1.22891 0.96423 0.88160 0.95134 1.48458 1.52524 1.28871 1.04222 1.17454 0.79095 0.82801 0.81280 1.90730 1.41899 1.31016 1.83943 1.20338 1.13287 1.00965 0.93019 1.22805 1.04009 0.96558 0.98923 1.22409 1.05250 0.96764 0.88976 1.41711 1.42911 1.17582 1.11130 0.72471 1.21961 0.98182 0.94951 0.91471 0.90852 0.92308 0.91785 0.74907 0.87227 0.87539 0.92025 0.88479 0.89768 0.87141 0.90425 0.81722 0.78041 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.48 71.98 0.61 -2.69 16 2 C 0.14 2.82 3.46 45.25 0.16 2.98 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.14 3.04 3.13 46.18 0.14 3.18 16 5 H 0.10 2.45 7.62 -2.39 -0.02 2.43 16 6 N -0.70 -17.09 4.56 -436.92 -1.99 -19.08 16 7 C 0.54 18.87 7.85 87.66 0.69 19.56 16 8 O -0.56 -24.36 15.55 -3.04 -0.05 -24.41 16 9 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 10 S -0.15 -7.92 20.57 -56.49 -1.16 -9.09 16 11 C -0.55 -30.88 9.50 67.95 0.65 -30.24 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 15 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.14 -2.54 6.77 31.99 0.22 -2.32 16 20 C 0.10 1.47 5.31 86.86 0.46 1.93 16 21 N -0.61 -12.26 3.08 -790.97 -2.44 -14.70 16 22 C 0.60 14.44 7.65 86.62 0.66 15.10 16 23 O -0.59 -18.23 15.93 -4.12 -0.07 -18.30 16 24 C -0.27 -4.91 6.20 -19.04 -0.12 -5.03 16 25 C -0.20 -2.57 9.27 23.62 0.22 -2.36 16 26 C -0.01 -0.04 11.89 83.12 0.99 0.94 16 27 N -0.54 -3.65 5.90 -194.55 -1.15 -4.80 16 28 H 0.44 -0.18 8.96 -92.71 -0.83 -1.01 16 29 C 0.07 0.99 11.70 83.92 0.98 1.97 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.46 6.87 -2.39 -0.02 1.44 16 32 H 0.06 1.23 6.21 -2.39 -0.01 1.21 16 33 H 0.41 8.19 6.38 -92.71 -0.59 7.60 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.76 16 35 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.27 15.35 8.31 -92.70 -0.77 14.57 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.35 5.15 -2.39 -0.01 1.34 16 40 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 41 H 0.17 1.70 5.08 -2.91 -0.01 1.68 16 42 H 0.20 0.13 8.06 -2.91 -0.02 0.11 16 43 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -82.88 367.97 1.67 -81.21 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.35 Total: 19.34 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 6.56 Total: -0.35 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -5.29 Total: -93.85 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.11 Total: -42.71 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.09 kcal Total: -82.88 1.67 -81.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735301809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.181 kcal (2) G-P(sol) polarization free energy of solvation -82.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds