Wall clock time and date at job start Tue Mar 31 2020 20:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.87499 * 2 1 4 4 C 1.54319 * 109.88170 * 238.97838 * 2 1 3 5 5 H 1.09009 * 110.71603 * 99.85439 * 4 2 1 6 6 N 1.46491 * 110.72173 * 336.75812 * 4 2 1 7 7 C 1.34783 * 120.00037 * 157.44141 * 6 4 2 8 8 O 1.21280 * 119.99979 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99913 * 179.97438 * 7 6 4 10 10 S 1.81001 * 109.46904 * 179.97438 * 9 7 6 11 11 C 1.76207 * 99.99955 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99636 * 0.02562 * 11 10 9 13 13 C 1.38794 * 119.99874 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99929 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00214 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46751 * 90.00080 * 15 13 11 17 17 H 1.48499 * 109.47249 * 209.99910 * 15 13 11 18 18 H 1.48501 * 109.46827 * 330.00009 * 15 13 11 19 19 C 1.55154 * 103.10353 * 218.30055 * 4 2 1 20 20 C 1.55388 * 101.36607 * 35.49842 * 19 4 2 21 21 N 1.47028 * 109.88030 * 121.17208 * 2 1 3 22 22 C 1.34773 * 125.64959 * 298.39747 * 21 2 1 23 23 O 1.21628 * 120.00206 * 354.45042 * 22 21 2 24 24 C 1.47259 * 120.00110 * 174.46072 * 22 21 2 25 25 C 1.46688 * 126.94333 * 352.84509 * 24 22 21 26 26 C 1.34480 * 106.33576 * 179.89225 * 25 24 22 27 27 N 1.36446 * 108.85732 * 0.37997 * 26 25 24 28 28 H 0.97003 * 124.85491 * 179.77461 * 27 26 25 29 29 C 1.34666 * 110.29655 * 359.74412 * 27 26 25 30 30 H 1.09004 * 109.47265 * 181.01898 * 1 2 3 31 31 H 1.08998 * 109.47389 * 301.01688 * 1 2 3 32 32 H 1.08996 * 109.46866 * 61.01839 * 1 2 3 33 33 H 0.96998 * 120.00266 * 337.15890 * 6 4 2 34 34 H 1.08998 * 109.47260 * 299.99741 * 9 7 6 35 35 H 1.08997 * 109.47059 * 60.00250 * 9 7 6 36 36 H 0.96995 * 120.00084 * 179.97438 * 14 13 11 37 37 H 1.08998 * 111.00808 * 153.66575 * 19 4 2 38 38 H 1.08999 * 111.00668 * 277.52076 * 19 4 2 39 39 H 1.08999 * 110.34589 * 204.16361 * 20 19 4 40 40 H 1.09000 * 110.44366 * 81.91649 * 20 19 4 41 41 H 1.08002 * 126.83232 * 0.02562 * 25 24 22 42 42 H 1.08007 * 125.57641 * 180.09040 * 26 25 24 43 43 H 1.07993 * 125.80117 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2437 5 1 2.3500 -0.0433 -2.0213 6 7 1.0472 -1.6831 -1.7496 7 6 1.0899 -2.0899 -3.0339 8 8 1.9623 -1.6814 -3.7707 9 6 0.0536 -3.0525 -3.5542 10 16 0.3782 -3.4027 -5.3001 11 6 -0.9430 -4.5181 -5.6392 12 1 -1.6421 -4.7803 -4.8588 13 6 -1.0852 -5.0598 -6.9092 14 7 -2.0725 -5.8927 -7.1626 15 14 0.1236 -4.6059 -8.2590 16 1 1.2594 -5.5626 -8.2486 17 1 -0.5602 -4.6637 -9.5759 18 1 0.6327 -3.2305 -8.0256 19 6 3.2896 -1.5132 -0.6988 20 6 2.8145 -1.8805 0.7343 21 7 2.0300 -0.7157 1.1830 22 6 1.8073 -0.3654 2.4652 23 8 1.2281 0.6733 2.7202 24 6 2.2654 -1.2402 3.5577 25 6 2.8428 -2.5825 3.4291 26 6 3.1142 -2.9988 4.6788 27 7 2.7422 -2.0246 5.5587 28 1 2.8321 -2.0845 6.5227 29 6 2.2330 -0.9676 4.8976 30 1 -0.3634 -1.0275 0.0183 31 1 -0.3634 0.5295 0.8807 32 1 -0.3633 0.4979 -0.8990 33 1 0.3516 -2.0128 -1.1594 34 1 0.0993 -3.9795 -2.9827 35 1 -0.9373 -2.6103 -3.4509 36 1 -2.1721 -6.2710 -8.0502 37 1 3.4870 -2.4076 -1.2897 38 1 4.1668 -0.8669 -0.6663 39 1 3.6716 -2.0358 1.3896 40 1 2.1891 -2.7729 0.7110 41 1 3.0173 -3.1272 2.5130 42 1 3.5507 -3.9507 4.9431 43 1 1.8623 -0.0591 5.3487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735301812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:56 Heat of formation + Delta-G solvation = -35.163131 kcal Electronic energy + Delta-G solvation = -26307.532490 eV Core-core repulsion = 22479.162266 eV Total energy + Delta-G solvation = -3828.370224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.14397 -41.37459 -40.11022 -38.41144 -35.20038 -34.64843 -32.92086 -32.27959 -31.38207 -30.21003 -29.80451 -27.83931 -26.82585 -24.90555 -23.19493 -22.04480 -21.68393 -20.83641 -19.97718 -19.90668 -19.03596 -18.09554 -17.82004 -17.16643 -17.07445 -16.50154 -16.38628 -15.96863 -15.66390 -15.15512 -14.96839 -14.88332 -14.81203 -14.59820 -14.43817 -14.34914 -14.14702 -13.77436 -13.58368 -13.32500 -13.26498 -13.00579 -12.97828 -12.67384 -12.59099 -12.29950 -12.20808 -11.87501 -11.81448 -11.14884 -10.97605 -10.92831 -10.50723 -10.14524 -9.83642 -9.64708 -9.22343 -8.96186 -8.49420 -6.19645 0.79656 1.01162 1.33389 1.48756 1.57485 1.58398 1.59257 1.94204 2.22159 2.27628 2.51306 2.56718 2.73845 2.88905 3.30343 3.53441 3.85504 3.95404 4.04589 4.13033 4.16195 4.24909 4.25852 4.34021 4.44314 4.50828 4.54251 4.58362 4.66925 4.77521 4.91963 5.01330 5.02537 5.04098 5.08885 5.21082 5.40576 5.48762 5.72797 5.79477 6.00529 6.13876 6.42905 6.55945 6.70648 6.95829 7.19138 7.26124 8.62970 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.002243 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.933408 B =12478.255336 C =12833.262551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.085 0.915 4 C 0.140 3.860 5 H 0.100 0.900 6 N -0.703 5.703 7 C 0.542 3.458 8 O -0.555 6.555 9 C -0.113 4.113 10 S -0.171 6.171 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.044 3.956 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.261 1.261 17 H -0.262 1.262 18 H -0.236 1.236 19 C -0.140 4.140 20 C 0.100 3.900 21 N -0.608 5.608 22 C 0.601 3.399 23 O -0.594 6.594 24 C -0.266 4.266 25 C -0.196 4.196 26 C -0.007 4.007 27 N -0.538 5.538 28 H 0.435 0.565 29 C 0.073 3.927 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.276 0.724 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.162 0.838 42 H 0.202 0.798 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.834 7.500 28.503 32.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.103 0.897 4 C 0.035 3.965 5 H 0.118 0.882 6 N -0.359 5.359 7 C 0.328 3.672 8 O -0.433 6.433 9 C -0.264 4.264 10 S 0.056 5.944 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.162 4.162 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.186 1.186 18 H -0.159 1.159 19 C -0.179 4.179 20 C -0.022 4.022 21 N -0.341 5.341 22 C 0.395 3.605 23 O -0.476 6.476 24 C -0.277 4.277 25 C -0.219 4.219 26 C -0.135 4.135 27 N -0.133 5.133 28 H 0.275 0.725 29 C -0.066 4.066 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.180 0.820 42 H 0.219 0.781 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 13.883 8.574 27.527 32.000 hybrid contribution -1.492 -0.752 0.582 1.769 sum 12.391 7.822 28.109 31.699 Atomic orbital electron populations 1.22016 0.94297 1.02441 1.02770 1.21704 0.95157 0.96441 0.83616 0.89665 1.21883 0.88481 0.91476 0.94684 0.88155 1.45876 1.32424 1.47270 1.10298 1.19846 0.84626 0.80623 0.82098 1.90698 1.37835 1.57130 1.57595 1.23277 1.02022 1.02404 0.98707 1.84671 1.40730 1.59594 1.09411 1.22479 1.14269 1.30315 1.00538 0.92042 1.25586 0.96791 0.93596 1.00183 1.70021 1.31664 1.30486 1.23451 0.85853 0.79595 0.81611 0.79229 1.18586 1.18598 1.15941 1.23311 0.97410 1.01873 0.95262 1.22857 0.96037 0.88172 0.95112 1.48330 1.52687 1.28911 1.04201 1.17439 0.77658 0.84115 0.81314 1.90735 1.45829 1.27022 1.84052 1.20339 1.16177 0.98379 0.92755 1.22698 1.05744 0.94617 0.98829 1.22391 1.06112 0.96205 0.88786 1.41715 1.47696 1.13267 1.10670 0.72479 1.21970 0.99592 0.93529 0.91473 0.91678 0.92643 0.90682 0.74834 0.86802 0.87123 0.91429 0.89478 0.88502 0.87886 0.90262 0.82042 0.78100 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 8.47 71.98 0.61 -2.53 16 2 C 0.13 2.64 3.40 45.34 0.15 2.80 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.14 2.80 3.13 46.18 0.14 2.94 16 5 H 0.10 2.28 7.62 -2.38 -0.02 2.27 16 6 N -0.70 -15.55 4.55 -436.93 -1.99 -17.53 16 7 C 0.54 17.24 7.85 87.66 0.69 17.93 16 8 O -0.55 -21.92 15.55 -3.03 -0.05 -21.96 16 9 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 10 S -0.17 -8.39 18.55 -56.49 -1.05 -9.43 16 11 C -0.53 -30.37 10.04 67.95 0.68 -29.69 16 12 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 13 C 0.04 2.54 5.50 84.86 0.47 3.01 16 14 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 15 Si 0.92 44.56 27.74 68.60 1.90 46.47 16 16 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.24 -11.41 6.74 99.48 0.67 -10.74 16 19 C -0.14 -2.28 6.81 32.15 0.22 -2.06 16 20 C 0.10 1.43 5.11 87.02 0.45 1.87 16 21 N -0.61 -11.75 3.07 -791.10 -2.43 -14.17 16 22 C 0.60 14.17 7.58 86.62 0.66 14.82 16 23 O -0.59 -18.07 16.18 -4.12 -0.07 -18.14 16 24 C -0.27 -4.84 6.18 -19.04 -0.12 -4.95 16 25 C -0.20 -2.48 9.25 23.62 0.22 -2.26 16 26 C -0.01 -0.05 11.89 83.12 0.99 0.94 16 27 N -0.54 -3.62 5.90 -194.56 -1.15 -4.77 16 28 H 0.44 -0.18 8.96 -92.71 -0.83 -1.01 16 29 C 0.07 0.98 11.70 83.91 0.98 1.96 16 30 H 0.06 1.17 6.21 -2.38 -0.01 1.16 16 31 H 0.05 1.32 7.09 -2.39 -0.02 1.30 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 7.49 6.39 -92.71 -0.59 6.89 16 34 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 35 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 36 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.20 5.92 -2.39 -0.01 1.19 16 40 H 0.08 1.03 7.75 -2.39 -0.02 1.01 16 41 H 0.16 1.64 5.17 -2.91 -0.02 1.62 16 42 H 0.20 0.15 8.06 -2.91 -0.02 0.12 16 43 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -80.54 365.94 1.66 -78.87 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.39 Total: 14.91 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 6.58 Total: 1.14 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -5.26 Total: -91.86 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.11 Total: -40.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.43 kcal Total: -80.54 1.66 -78.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735301812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.711 kcal (2) G-P(sol) polarization free energy of solvation -80.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds