Wall clock time and date at job start Tue Mar 31 2020 20:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87161 * 2 1 4 4 C 1.54368 * 110.02745 * 121.06307 * 2 1 3 5 5 C 1.55158 * 102.92055 * 141.65326 * 4 2 1 6 6 H 1.09001 * 111.00268 * 82.63794 * 5 4 2 7 7 N 1.46900 * 111.00192 * 206.45292 * 5 4 2 8 8 C 1.46904 * 110.99621 * 201.81461 * 7 5 4 9 9 C 1.50704 * 109.46908 * 180.02562 * 8 7 5 10 10 O 1.21291 * 120.00017 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99862 * 180.02562 * 9 8 7 12 12 C 1.37100 * 119.99674 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00184 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99522 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00235 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99556 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46996 * 270.00337 * 16 14 12 18 18 H 1.48494 * 109.47429 * 30.00438 * 16 14 12 19 19 H 1.48494 * 109.46842 * 150.00802 * 16 14 12 20 20 C 1.54908 * 101.61589 * 324.54589 * 5 4 2 21 21 N 1.47018 * 109.88703 * 238.98299 * 2 1 3 22 22 C 1.34781 * 125.64820 * 61.52150 * 21 2 1 23 23 O 1.21632 * 119.99709 * 357.22926 * 22 21 2 24 24 C 1.47188 * 119.99836 * 177.22752 * 22 21 2 25 25 C 1.44424 * 123.46281 * 17.54074 * 24 22 21 26 26 C 1.32766 * 113.08328 * 179.97438 * 25 24 22 27 27 S 1.75508 * 110.57613 * 0.02562 * 26 25 24 28 28 C 1.36012 * 123.45823 * 197.24499 * 24 22 21 29 29 H 1.09001 * 109.47379 * 179.55946 * 1 2 3 30 30 H 1.08999 * 109.47446 * 299.56741 * 1 2 3 31 31 H 1.09008 * 109.46902 * 59.56601 * 1 2 3 32 32 H 1.09004 * 110.70777 * 23.30871 * 4 2 1 33 33 H 1.09005 * 110.75656 * 260.01573 * 4 2 1 34 34 H 1.00894 * 111.00539 * 325.77297 * 7 5 4 35 35 H 1.09008 * 109.46921 * 60.00605 * 8 7 5 36 36 H 1.08993 * 109.47871 * 300.00379 * 8 7 5 37 37 H 0.96998 * 120.00065 * 0.02562 * 11 9 8 38 38 H 0.97001 * 119.99729 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.37058 * 155.82616 * 20 5 4 40 40 H 1.09005 * 110.36783 * 278.04236 * 20 5 4 41 41 H 1.08005 * 123.45893 * 359.95448 * 25 24 22 42 42 H 1.08001 * 124.71146 * 179.97438 * 26 25 24 43 43 H 1.07999 * 124.59190 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0586 -0.7483 1.2424 5 6 3.2918 -1.5107 0.6895 6 1 4.1685 -0.8638 0.6567 7 7 3.5617 -2.7190 1.4801 8 6 4.9569 -3.1508 1.3219 9 6 5.1955 -4.3904 2.1451 10 8 4.2920 -4.8675 2.7988 11 7 6.4128 -4.9688 2.1549 12 6 6.6299 -6.0962 2.9042 13 1 5.8255 -6.5210 3.4863 14 6 7.8848 -6.6928 2.9139 15 7 8.8635 -6.1762 2.2053 16 14 8.1805 -8.2293 3.9343 17 1 8.6286 -7.8408 5.2957 18 1 6.9204 -9.0090 4.0317 19 1 9.2276 -9.0596 3.2867 20 6 2.8177 -1.8762 -0.7392 21 7 2.0301 -0.7124 -1.1848 22 6 1.8062 -0.3595 -2.4662 23 8 1.0973 0.5960 -2.7188 24 6 2.4196 -1.1304 -3.5598 25 6 2.9578 -2.4601 -3.3923 26 6 3.4606 -2.9632 -4.5134 27 16 3.2943 -1.8175 -5.8325 28 6 2.5324 -0.6660 -4.8331 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 1.3109 -1.4463 1.6191 33 1 2.3570 -0.0445 2.0194 34 1 3.3364 -2.5727 2.4526 35 1 5.6233 -2.3566 1.6588 36 1 5.1531 -3.3688 0.2722 37 1 7.1354 -4.5870 1.6325 38 1 9.7396 -6.5926 2.2124 39 1 3.6742 -2.0284 -1.3959 40 1 2.1954 -2.7708 -0.7152 41 1 2.9523 -2.9907 -2.4515 42 1 3.9102 -3.9412 -4.6012 43 1 2.1884 0.3022 -5.1654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755670046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:12 Heat of formation + Delta-G solvation = -21.214096 kcal Electronic energy + Delta-G solvation = -26392.895133 eV Core-core repulsion = 22565.129784 eV Total energy + Delta-G solvation = -3827.765348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63978 -38.56571 -37.89592 -36.96205 -34.87193 -33.83911 -32.06474 -31.28908 -30.13052 -29.94138 -26.44200 -26.17308 -25.40541 -24.07865 -22.24037 -20.95945 -20.42227 -19.40058 -19.09372 -18.07054 -17.90809 -16.96137 -16.35751 -16.08229 -15.46810 -15.25619 -14.88743 -14.60289 -14.45952 -14.24073 -13.80573 -13.60455 -13.37885 -13.35840 -13.12590 -12.99650 -12.82956 -12.54330 -12.44212 -12.24893 -12.08323 -11.68852 -11.55357 -11.46224 -11.15983 -11.06208 -10.92400 -10.76950 -10.42693 -10.25868 -10.03116 -9.55409 -9.30695 -8.85255 -8.67224 -8.54258 -8.21337 -8.01170 -6.46126 -3.87102 0.57571 1.28979 1.63502 1.79234 2.81223 3.13631 3.14704 3.23992 3.29685 3.84673 3.96246 4.17015 4.29968 4.39643 4.52913 4.71658 4.83138 4.98755 5.03367 5.09948 5.17847 5.20060 5.22345 5.27708 5.44218 5.48146 5.58842 5.60861 5.65745 5.70390 5.81743 5.84314 5.87398 5.97307 5.97894 6.10258 6.21227 6.27110 7.08199 7.32842 7.50875 7.51312 8.00816 8.01404 8.56002 9.13335 9.49132 10.00104 10.71459 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.002628 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.066361 B =10650.285235 C =12576.421646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.131 4.131 5 C 0.072 3.928 6 H 0.062 0.938 7 N -0.656 5.656 8 C 0.049 3.951 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.269 1.269 19 H -0.283 1.283 20 C 0.097 3.903 21 N -0.606 5.606 22 C 0.597 3.403 23 O -0.542 6.542 24 C -0.159 4.159 25 C -0.125 4.125 26 C -0.228 4.228 27 S 0.179 5.821 28 C -0.184 4.184 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.357 0.643 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 12.190 -12.775 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.169 4.169 5 C -0.040 4.040 6 H 0.080 0.920 7 N -0.290 5.290 8 C -0.084 4.084 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.194 1.194 19 H -0.209 1.209 20 C -0.026 4.026 21 N -0.339 5.339 22 C 0.385 3.615 23 O -0.421 6.421 24 C -0.176 4.176 25 C -0.154 4.154 26 C -0.363 4.363 27 S 0.444 5.556 28 C -0.322 4.322 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.178 0.822 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.184 0.816 42 H 0.189 0.811 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.242 11.848 -14.555 21.380 hybrid contribution 0.897 0.113 2.190 2.369 sum -9.345 11.961 -12.365 19.578 Atomic orbital electron populations 1.22145 0.94443 1.02597 1.02886 1.21526 0.94907 0.96111 0.83809 0.90602 1.22956 0.97976 0.99509 0.96482 1.22672 0.96928 0.90858 0.93508 0.92018 1.59969 1.22000 1.31301 1.15690 1.21761 0.88819 0.96725 1.01070 1.19759 0.83939 0.87105 0.86681 1.90532 1.43228 1.66021 1.46932 1.41864 1.09756 1.25552 1.42728 1.19703 0.96994 1.02608 1.23661 0.87892 1.25262 0.95205 0.99600 0.97806 1.69608 1.02702 1.41179 1.40743 0.85862 0.78262 0.80883 0.79327 1.20411 1.19365 1.20908 1.22846 0.95728 0.88769 0.95274 1.48312 1.52122 1.28803 1.04705 1.17221 0.80241 0.83272 0.80768 1.90768 1.38813 1.29205 1.83359 1.20197 1.07335 0.96111 0.93990 1.21988 0.98878 0.94109 1.00382 1.25608 1.09506 1.04819 0.96388 1.83094 1.54393 1.05669 1.12441 1.25540 1.04201 1.05464 0.97021 0.92244 0.91652 0.91144 0.88966 0.89865 0.82249 0.93605 0.89599 0.77461 0.91834 0.89585 0.89505 0.81613 0.81089 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.11 37.16 0.34 -1.32 16 2 C 0.14 1.46 3.47 -66.93 -0.23 1.23 16 3 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 4 C -0.13 -1.24 5.92 -24.87 -0.15 -1.39 16 5 C 0.07 0.79 3.34 -65.56 -0.22 0.57 16 6 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 7 N -0.66 -9.27 6.02 -105.72 -0.64 -9.91 16 8 C 0.05 0.78 6.05 -4.97 -0.03 0.75 16 9 C 0.44 9.80 7.82 -10.98 -0.09 9.71 16 10 O -0.58 -15.10 15.78 5.55 0.09 -15.01 16 11 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 12 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 13 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 16 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 C 0.10 1.06 4.78 -2.53 -0.01 1.05 16 21 N -0.61 -7.06 3.07 -164.33 -0.50 -7.56 16 22 C 0.60 7.94 7.59 -12.62 -0.10 7.85 16 23 O -0.54 -8.59 15.75 5.25 0.08 -8.51 16 24 C -0.16 -1.84 5.87 -104.63 -0.61 -2.45 16 25 C -0.13 -1.27 8.50 -39.02 -0.33 -1.60 16 26 C -0.23 -2.00 11.12 28.86 0.32 -1.68 16 27 S 0.18 1.42 23.02 -107.50 -2.48 -1.05 16 28 C -0.18 -1.86 10.56 29.93 0.32 -1.54 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.85 6.79 -51.92 -0.35 0.50 16 32 H 0.09 0.91 7.86 -51.93 -0.41 0.50 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.36 5.22 8.19 -39.29 -0.32 4.90 16 35 H 0.05 0.66 8.09 -51.92 -0.42 0.24 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.09 0.89 5.65 -51.93 -0.29 0.60 16 40 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 41 H 0.17 1.61 4.63 -52.48 -0.24 1.36 16 42 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -32.04 369.06 -8.91 -40.95 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.64 Total: 13.52 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.03 Total: 3.38 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.47 Total: -54.39 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.52 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.48 Total: -1.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.04 -8.91 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.734 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds