Wall clock time and date at job start Tue Mar 31 2020 20:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87366 * 2 1 4 4 C 1.54324 * 110.01035 * 121.10294 * 2 1 3 5 5 C 1.55160 * 102.94276 * 97.29131 * 4 2 1 6 6 H 1.09000 * 111.00101 * 277.38790 * 5 4 2 7 7 N 1.46893 * 111.00265 * 153.57810 * 5 4 2 8 8 C 1.46901 * 111.00454 * 154.99837 * 7 5 4 9 9 C 1.50695 * 109.47473 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00320 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99977 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00098 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99674 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99877 * 179.97438 * 12 11 9 15 15 N 1.31415 * 120.00076 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00297 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47377 * 89.99734 * 16 14 12 18 18 H 1.48498 * 109.47300 * 209.99672 * 16 14 12 19 19 H 1.48499 * 109.47123 * 329.99458 * 16 14 12 20 20 C 1.54909 * 101.58287 * 35.50371 * 5 4 2 21 21 N 1.47027 * 109.87743 * 238.98077 * 2 1 3 22 22 C 1.34777 * 125.64540 * 59.11178 * 21 2 1 23 23 O 1.21639 * 120.00263 * 353.82056 * 22 21 2 24 24 C 1.47192 * 120.00032 * 173.81987 * 22 21 2 25 25 C 1.44430 * 123.45819 * 351.87947 * 24 22 21 26 26 C 1.32769 * 113.07874 * 179.80454 * 25 24 22 27 27 S 1.75506 * 110.57692 * 0.44014 * 26 25 24 28 28 C 1.36007 * 123.46324 * 172.16795 * 24 22 21 29 29 H 1.08997 * 109.47182 * 179.56055 * 1 2 3 30 30 H 1.09005 * 109.47018 * 299.56308 * 1 2 3 31 31 H 1.09003 * 109.46798 * 59.55925 * 1 2 3 32 32 H 1.08996 * 110.72061 * 215.65835 * 4 2 1 33 33 H 1.09006 * 110.71643 * 338.92790 * 4 2 1 34 34 H 1.00905 * 111.00132 * 278.95381 * 7 5 4 35 35 H 1.09001 * 109.47192 * 300.00558 * 8 7 5 36 36 H 1.09001 * 109.46573 * 59.99790 * 8 7 5 37 37 H 0.97003 * 120.00000 * 359.97438 * 11 9 8 38 38 H 0.96992 * 120.00538 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.36679 * 204.15118 * 20 5 4 40 40 H 1.08999 * 110.36451 * 81.82623 * 20 5 4 41 41 H 1.07994 * 123.45553 * 359.97438 * 25 24 22 42 42 H 1.08003 * 124.70771 * 180.17931 * 26 25 24 43 43 H 1.08003 * 124.58751 * 359.94395 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7491 1.2416 5 6 2.3574 -2.1682 0.6901 6 1 1.4520 -2.7744 0.6597 7 7 3.4044 -2.8299 1.4798 8 6 3.2917 -4.2914 1.3840 9 6 4.3802 -4.9341 2.2044 10 8 5.1723 -4.2427 2.8091 11 7 4.4741 -6.2773 2.2654 12 6 5.4641 -6.8620 3.0122 13 1 6.1688 -6.2463 3.5513 14 6 5.5605 -8.2467 3.0755 15 7 6.5097 -8.8072 3.7909 16 14 4.3420 -9.3115 2.1425 17 1 4.8657 -9.5856 0.7802 18 1 4.1497 -10.5939 2.8661 19 1 3.0418 -8.6016 2.0394 20 6 2.8598 -1.8467 -0.7395 21 7 2.0299 -0.7125 -1.1849 22 6 1.7682 -0.3862 -2.4662 23 8 0.9746 0.5006 -2.7180 24 6 2.4428 -1.1028 -3.5607 25 6 3.5172 -2.0453 -3.3523 26 6 3.9720 -2.5741 -4.4820 27 16 3.1031 -1.9237 -5.8612 28 6 2.1223 -0.9412 -4.8725 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5207 -0.8860 32 1 2.9684 -0.2810 1.6162 33 1 1.2961 -0.7905 2.0200 34 1 4.3217 -2.5187 1.1971 35 1 2.3184 -4.6063 1.7604 36 1 3.3943 -4.5961 0.3425 37 1 3.8409 -6.8302 1.7815 38 1 6.5774 -9.7738 3.8348 39 1 2.7127 -2.7049 -1.3952 40 1 3.9115 -1.5614 -0.7168 41 1 3.9083 -2.2963 -2.3775 42 1 4.7692 -3.3002 -4.5439 43 1 1.3502 -0.2804 -5.2381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755670047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:14 Heat of formation + Delta-G solvation = -12.320014 kcal Electronic energy + Delta-G solvation = -26488.079318 eV Core-core repulsion = 22660.699646 eV Total energy + Delta-G solvation = -3827.379672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78250 -38.74420 -38.05321 -37.08170 -34.95854 -33.90673 -32.17024 -31.72374 -30.19872 -30.01234 -26.58496 -26.16804 -25.50904 -23.92714 -22.64881 -20.94798 -20.61050 -19.48440 -19.25421 -18.44799 -18.19679 -16.68093 -16.53183 -16.08493 -15.71898 -15.41476 -14.97021 -14.86060 -14.67493 -14.08188 -13.73207 -13.61712 -13.43220 -13.26054 -13.06686 -13.06323 -13.04647 -12.72913 -12.60096 -12.39748 -12.19169 -12.12524 -11.85987 -11.61103 -11.25253 -11.20203 -11.06299 -10.79659 -10.63998 -10.09999 -10.02277 -9.62668 -9.42319 -8.97937 -8.79891 -8.66433 -8.29181 -8.22320 -6.35812 -3.87667 0.46131 1.17932 1.52789 1.65697 2.70991 2.98502 3.02249 3.06714 3.11566 3.66724 3.88606 4.05687 4.24062 4.28052 4.42189 4.62028 4.77134 4.80353 4.84904 4.95856 5.02983 5.09439 5.12196 5.17217 5.29357 5.40367 5.43802 5.48189 5.54637 5.68370 5.70779 5.73334 5.80823 5.84814 5.90359 5.91830 6.07891 6.24544 6.93953 7.22111 7.40051 7.52565 7.91608 8.09039 8.53977 8.89770 9.36956 9.76147 10.77212 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.002801 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.695993 B = 9994.363666 C =11738.802386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.077 0.923 4 C -0.117 4.117 5 C 0.077 3.923 6 H 0.094 0.906 7 N -0.651 5.651 8 C 0.045 3.955 9 C 0.448 3.552 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.880 5.880 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.059 3.941 21 N -0.604 5.604 22 C 0.596 3.404 23 O -0.539 6.539 24 C -0.161 4.161 25 C -0.129 4.129 26 C -0.230 4.230 27 S 0.183 5.817 28 C -0.181 4.181 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.354 0.646 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 13.296 -17.902 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.035 4.035 6 H 0.112 0.888 7 N -0.283 5.283 8 C -0.087 4.087 9 C 0.234 3.766 10 O -0.446 6.446 11 N -0.228 5.228 12 C -0.435 4.435 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.066 4.066 21 N -0.337 5.337 22 C 0.384 3.616 23 O -0.418 6.418 24 C -0.178 4.178 25 C -0.157 4.157 26 C -0.364 4.364 27 S 0.448 5.552 28 C -0.320 4.320 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.175 0.825 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.182 0.818 42 H 0.189 0.811 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.005 13.839 -18.561 25.635 hybrid contribution -0.604 -1.075 -0.025 1.234 sum -11.610 12.763 -18.587 25.361 Atomic orbital electron populations 1.22176 0.94505 1.02433 1.03063 1.21662 0.94953 0.96300 0.83864 0.90513 1.22751 1.02593 0.94268 0.95901 1.22848 0.96099 0.95862 0.88660 0.88751 1.60108 1.07066 1.04606 1.56504 1.21801 1.00078 0.88423 0.98425 1.19656 0.87806 0.82629 0.86515 1.90577 1.44185 1.61949 1.47909 1.42207 1.29622 1.05431 1.45575 1.19431 1.07722 0.91051 1.25269 0.86244 1.25044 0.97162 0.96550 0.97356 1.69618 1.31803 1.11311 1.39259 0.86677 0.81071 0.81151 0.80517 1.19647 1.20133 1.19461 1.23679 0.95439 0.89557 0.97974 1.48226 1.50301 1.30426 1.04797 1.17243 0.81052 0.82474 0.80803 1.90769 1.35325 1.32391 1.83333 1.20214 1.01203 1.03142 0.93290 1.22026 0.96455 0.96683 1.00568 1.25619 1.07083 1.07973 0.95766 1.83129 1.27621 1.34960 1.09458 1.25583 1.04988 1.04523 0.96888 0.92529 0.91601 0.90940 0.89654 0.89251 0.82475 0.89230 0.93580 0.79682 0.91556 0.89565 0.90499 0.81825 0.81133 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.05 37.16 0.34 -1.25 16 2 C 0.14 1.34 3.53 -66.95 -0.24 1.10 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.09 6.19 -24.89 -0.15 -1.24 16 5 C 0.08 0.77 3.38 -65.57 -0.22 0.55 16 6 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 7 N -0.65 -8.62 6.04 -105.73 -0.64 -9.25 16 8 C 0.05 0.66 6.03 -4.98 -0.03 0.63 16 9 C 0.45 9.52 7.82 -10.99 -0.09 9.43 16 10 O -0.56 -14.39 15.78 5.55 0.09 -14.31 16 11 N -0.59 -13.36 5.09 -10.97 -0.06 -13.41 16 12 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 13 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -25.21 13.96 55.50 0.77 -24.43 16 16 Si 0.88 18.76 27.74 -169.99 -4.71 14.04 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 20 C 0.06 0.54 4.57 -2.53 -0.01 0.53 16 21 N -0.60 -6.44 3.08 -164.35 -0.51 -6.95 16 22 C 0.60 7.43 7.63 -12.62 -0.10 7.34 16 23 O -0.54 -8.15 15.42 5.24 0.08 -8.07 16 24 C -0.16 -1.72 5.92 -104.63 -0.62 -2.34 16 25 C -0.13 -1.17 8.65 -39.02 -0.34 -1.50 16 26 C -0.23 -1.79 11.12 28.86 0.32 -1.47 16 27 S 0.18 1.31 23.02 -107.50 -2.48 -1.16 16 28 C -0.18 -1.70 10.53 29.93 0.32 -1.38 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.85 6.54 -51.93 -0.34 0.51 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 34 H 0.35 4.81 7.89 -39.29 -0.31 4.50 16 35 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.09 0.74 5.96 -51.93 -0.31 0.43 16 40 H 0.08 0.67 7.08 -51.93 -0.37 0.30 16 41 H 0.16 1.33 4.26 -52.49 -0.22 1.10 16 42 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.17 1.53 8.03 -52.48 -0.42 1.11 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -33.56 364.68 -8.55 -42.12 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.53 Total: 13.06 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.07 Total: 2.87 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.43 Total: -54.05 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.17 Total: -22.38 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.04 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.48 Total: -1.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.56 -8.55 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.798 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds