Wall clock time and date at job start Tue Mar 31 2020 20:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87366 * 2 1 4 4 C 1.54324 * 110.01035 * 121.10294 * 2 1 3 5 5 C 1.55160 * 102.94276 * 97.29131 * 4 2 1 6 6 H 1.09000 * 111.00101 * 277.38790 * 5 4 2 7 7 N 1.46893 * 111.00265 * 153.57810 * 5 4 2 8 8 C 1.46901 * 111.00454 * 154.99837 * 7 5 4 9 9 C 1.50695 * 109.47473 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00320 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99977 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00098 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99674 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99877 * 179.97438 * 12 11 9 15 15 N 1.31415 * 120.00076 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00297 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47377 * 89.99734 * 16 14 12 18 18 H 1.48498 * 109.47300 * 209.99672 * 16 14 12 19 19 H 1.48499 * 109.47123 * 329.99458 * 16 14 12 20 20 C 1.54909 * 101.58287 * 35.50371 * 5 4 2 21 21 N 1.47027 * 109.87743 * 238.98077 * 2 1 3 22 22 C 1.34777 * 125.64540 * 59.11178 * 21 2 1 23 23 O 1.21639 * 120.00263 * 353.82056 * 22 21 2 24 24 C 1.47192 * 120.00032 * 173.81987 * 22 21 2 25 25 C 1.44430 * 123.45819 * 351.87947 * 24 22 21 26 26 C 1.32769 * 113.07874 * 179.80454 * 25 24 22 27 27 S 1.75506 * 110.57692 * 0.44014 * 26 25 24 28 28 C 1.36007 * 123.46324 * 172.16795 * 24 22 21 29 29 H 1.08997 * 109.47182 * 179.56055 * 1 2 3 30 30 H 1.09005 * 109.47018 * 299.56308 * 1 2 3 31 31 H 1.09003 * 109.46798 * 59.55925 * 1 2 3 32 32 H 1.08996 * 110.72061 * 215.65835 * 4 2 1 33 33 H 1.09006 * 110.71643 * 338.92790 * 4 2 1 34 34 H 1.00905 * 111.00132 * 278.95381 * 7 5 4 35 35 H 1.09001 * 109.47192 * 300.00558 * 8 7 5 36 36 H 1.09001 * 109.46573 * 59.99790 * 8 7 5 37 37 H 0.97003 * 120.00000 * 359.97438 * 11 9 8 38 38 H 0.96992 * 120.00538 * 180.02562 * 15 14 12 39 39 H 1.09001 * 110.36679 * 204.15118 * 20 5 4 40 40 H 1.08999 * 110.36451 * 81.82623 * 20 5 4 41 41 H 1.07994 * 123.45553 * 359.97438 * 25 24 22 42 42 H 1.08003 * 124.70771 * 180.17931 * 26 25 24 43 43 H 1.08003 * 124.58751 * 359.94395 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7491 1.2416 5 6 2.3574 -2.1682 0.6901 6 1 1.4520 -2.7744 0.6597 7 7 3.4044 -2.8299 1.4798 8 6 3.2917 -4.2914 1.3840 9 6 4.3802 -4.9341 2.2044 10 8 5.1723 -4.2427 2.8091 11 7 4.4741 -6.2773 2.2654 12 6 5.4641 -6.8620 3.0122 13 1 6.1688 -6.2463 3.5513 14 6 5.5605 -8.2467 3.0755 15 7 6.5097 -8.8072 3.7909 16 14 4.3420 -9.3115 2.1425 17 1 4.8657 -9.5856 0.7802 18 1 4.1497 -10.5939 2.8661 19 1 3.0418 -8.6016 2.0394 20 6 2.8598 -1.8467 -0.7395 21 7 2.0299 -0.7125 -1.1849 22 6 1.7682 -0.3862 -2.4662 23 8 0.9746 0.5006 -2.7180 24 6 2.4428 -1.1028 -3.5607 25 6 3.5172 -2.0453 -3.3523 26 6 3.9720 -2.5741 -4.4820 27 16 3.1031 -1.9237 -5.8612 28 6 2.1223 -0.9412 -4.8725 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5207 -0.8860 32 1 2.9684 -0.2810 1.6162 33 1 1.2961 -0.7905 2.0200 34 1 4.3217 -2.5187 1.1971 35 1 2.3184 -4.6063 1.7604 36 1 3.3943 -4.5961 0.3425 37 1 3.8409 -6.8302 1.7815 38 1 6.5774 -9.7738 3.8348 39 1 2.7127 -2.7049 -1.3952 40 1 3.9115 -1.5614 -0.7168 41 1 3.9083 -2.2963 -2.3775 42 1 4.7692 -3.3002 -4.5439 43 1 1.3502 -0.2804 -5.2381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755670047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:13 Heat of formation + Delta-G solvation = -37.709838 kcal Electronic energy + Delta-G solvation = -26489.180303 eV Core-core repulsion = 22660.699646 eV Total energy + Delta-G solvation = -3828.480657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61766 -40.27153 -39.08680 -37.85264 -36.25282 -35.60511 -33.71314 -32.96542 -31.12773 -30.74351 -28.02013 -26.95495 -26.31288 -25.47994 -23.48023 -21.72396 -21.36731 -21.22667 -20.28377 -20.03691 -18.86971 -17.89984 -17.45649 -17.08901 -16.82912 -16.73143 -16.36266 -15.89173 -15.52198 -15.40063 -15.05829 -14.65483 -14.52812 -14.22398 -14.12635 -14.06772 -13.87501 -13.79816 -13.66762 -13.46647 -13.30723 -13.04445 -12.98566 -12.82925 -12.38479 -12.35085 -12.02069 -11.95469 -11.81088 -11.55816 -11.47464 -10.99950 -10.39589 -10.21665 -10.09986 -9.77679 -9.44097 -9.28500 -8.38369 -5.99154 -0.23242 0.57638 0.90657 0.95577 1.33130 1.38125 1.47311 1.90208 2.00322 2.23502 2.25839 2.72701 3.18702 3.27894 3.47704 3.62884 3.75856 3.89391 4.02240 4.08074 4.18623 4.24808 4.34740 4.36190 4.43919 4.47148 4.56392 4.63194 4.69351 4.73041 4.81577 4.97378 5.04546 5.09643 5.14471 5.20995 5.31223 5.45268 5.55816 5.93020 6.05124 6.33515 6.41421 6.62735 6.91907 7.03652 7.43762 8.00552 8.79346 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.002801 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.695993 B = 9994.363666 C =11738.802386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.070 0.930 4 C -0.109 4.109 5 C 0.084 3.916 6 H 0.107 0.893 7 N -0.666 5.666 8 C 0.059 3.941 9 C 0.449 3.551 10 O -0.614 6.614 11 N -0.591 5.591 12 C -0.327 4.327 13 H 0.055 0.945 14 C -0.016 4.016 15 N -0.937 5.937 16 Si 0.964 3.036 17 H -0.256 1.256 18 H -0.279 1.279 19 H -0.229 1.229 20 C 0.062 3.938 21 N -0.602 5.602 22 C 0.589 3.411 23 O -0.578 6.578 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.231 4.231 27 S 0.235 5.765 28 C -0.197 4.197 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.350 0.650 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.390 0.610 38 H 0.278 0.722 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.172 0.828 42 H 0.193 0.807 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 12.107 -20.282 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.030 3.970 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.028 4.028 6 H 0.125 0.875 7 N -0.297 5.297 8 C -0.073 4.073 9 C 0.237 3.763 10 O -0.498 6.498 11 N -0.233 5.233 12 C -0.456 4.456 13 H 0.073 0.927 14 C -0.214 4.214 15 N -0.577 5.577 16 Si 0.784 3.216 17 H -0.180 1.180 18 H -0.204 1.204 19 H -0.152 1.152 20 C -0.063 4.063 21 N -0.334 5.334 22 C 0.378 3.622 23 O -0.460 6.460 24 C -0.202 4.202 25 C -0.167 4.167 26 C -0.366 4.366 27 S 0.500 5.500 28 C -0.336 4.336 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.189 0.811 42 H 0.210 0.790 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.102 12.662 -20.949 27.764 hybrid contribution 0.143 -0.568 0.718 0.926 sum -12.959 12.095 -20.231 26.898 Atomic orbital electron populations 1.22105 0.94221 1.02438 1.02719 1.21705 0.95162 0.96148 0.83946 0.91191 1.22694 1.02626 0.93792 0.95666 1.22828 0.95449 0.95872 0.88602 0.87479 1.60081 1.07677 1.04055 1.57930 1.21737 0.97862 0.88684 0.98992 1.20991 0.88055 0.81930 0.85294 1.90561 1.46456 1.63047 1.49758 1.42032 1.29232 1.06310 1.45727 1.19001 1.08716 0.91300 1.26594 0.92665 1.26115 0.99478 0.97729 0.98114 1.69806 1.34487 1.12024 1.41422 0.85380 0.79283 0.78172 0.78780 1.18021 1.20439 1.15236 1.23724 0.95440 0.89516 0.97603 1.48265 1.50017 1.30613 1.04545 1.17609 0.80739 0.82194 0.81629 1.90740 1.37142 1.34147 1.83958 1.20254 1.02412 1.04360 0.93137 1.22044 0.96381 0.96844 1.01467 1.25969 1.07204 1.07800 0.95667 1.82966 1.25839 1.33076 1.08072 1.25788 1.05480 1.04987 0.97305 0.92237 0.89950 0.93280 0.90115 0.88337 0.82914 0.86673 0.89720 0.77439 0.91229 0.88235 0.89951 0.81128 0.79010 0.81033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.05 71.98 0.65 -2.22 16 2 C 0.13 2.50 3.53 45.34 0.16 2.66 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.11 -1.83 6.19 31.78 0.20 -1.63 16 5 C 0.08 1.43 3.38 46.31 0.16 1.58 16 6 H 0.11 1.63 7.83 -2.39 -0.02 1.61 16 7 N -0.67 -15.89 6.04 -488.41 -2.95 -18.84 16 8 C 0.06 1.51 6.03 85.56 0.52 2.02 16 9 C 0.45 18.55 7.82 87.66 0.69 19.24 16 10 O -0.61 -31.95 15.78 -3.07 -0.05 -32.00 16 11 N -0.59 -26.09 5.09 -306.99 -1.56 -27.65 16 12 C -0.33 -18.47 10.16 84.04 0.85 -17.61 16 13 H 0.06 3.75 7.39 -2.91 -0.02 3.73 16 14 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 15 N -0.94 -55.43 13.96 21.66 0.30 -55.13 16 16 Si 0.96 37.16 27.74 68.60 1.90 39.06 16 17 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 18 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 20 C 0.06 0.98 4.57 86.86 0.40 1.38 16 21 N -0.60 -12.11 3.08 -792.13 -2.44 -14.56 16 22 C 0.59 14.49 7.63 86.60 0.66 15.15 16 23 O -0.58 -17.87 15.42 -4.16 -0.06 -17.94 16 24 C -0.18 -3.73 5.92 -19.87 -0.12 -3.85 16 25 C -0.14 -2.21 8.65 22.67 0.20 -2.01 16 26 C -0.23 -2.92 11.12 66.64 0.74 -2.18 16 27 S 0.23 2.79 23.02 -56.49 -1.30 1.49 16 28 C -0.20 -3.49 10.53 67.30 0.71 -2.78 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.05 1.15 6.54 -2.39 -0.02 1.13 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.49 7.83 -2.38 -0.02 1.47 16 34 H 0.35 8.91 7.89 -89.69 -0.71 8.21 16 35 H 0.12 2.45 8.09 -2.39 -0.02 2.43 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.39 14.00 5.76 -92.71 -0.53 13.47 16 38 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.10 1.37 5.96 -2.39 -0.01 1.35 16 40 H 0.08 1.26 7.08 -2.39 -0.02 1.24 16 41 H 0.17 2.32 4.26 -2.91 -0.01 2.30 16 42 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.17 3.01 8.03 -2.91 -0.02 2.98 16 Total: -1.00 -79.14 364.68 -0.12 -79.26 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.23 Total: 36.94 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.27 Total: 9.35 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -6.65 Total: -116.17 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.11 Total: -49.94 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.90 Total: 39.06 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.30 Total: 1.49 kcal Total: -79.14 -0.12 -79.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.552 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds