Wall clock time and date at job start Tue Mar 31 2020 20:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.87143 * 2 1 4 4 C 1.54327 * 109.88041 * 238.98702 * 2 1 3 5 5 C 1.55156 * 102.94035 * 218.38772 * 4 2 1 6 6 H 1.08994 * 111.00401 * 277.43071 * 5 4 2 7 7 N 1.46892 * 111.00321 * 153.57527 * 5 4 2 8 8 C 1.46902 * 111.00226 * 161.35051 * 7 5 4 9 9 C 1.50697 * 109.47637 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00055 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00202 * 179.97438 * 9 8 7 12 12 C 1.37103 * 120.00049 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99860 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99766 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00247 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99736 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47012 * 89.99923 * 16 14 12 18 18 H 1.48495 * 109.47010 * 210.00201 * 16 14 12 19 19 H 1.48504 * 109.46931 * 330.00119 * 16 14 12 20 20 C 1.54916 * 101.58123 * 35.50056 * 5 4 2 21 21 N 1.47291 * 109.87594 * 121.13921 * 2 1 3 22 22 C 1.34774 * 125.79135 * 298.36554 * 21 2 1 23 23 O 1.21639 * 120.00384 * 353.75254 * 22 21 2 24 24 C 1.47188 * 119.99909 * 173.76018 * 22 21 2 25 25 C 1.44422 * 123.46145 * 351.85108 * 24 22 21 26 26 C 1.32769 * 113.08675 * 179.80633 * 25 24 22 27 27 S 1.75506 * 110.57518 * 0.44305 * 26 25 24 28 28 C 1.36013 * 123.46258 * 172.14284 * 24 22 21 29 29 H 1.09002 * 109.46973 * 181.01458 * 1 2 3 30 30 H 1.09004 * 109.47071 * 301.01004 * 1 2 3 31 31 H 1.09000 * 109.47284 * 61.01254 * 1 2 3 32 32 H 1.09002 * 110.71633 * 100.02802 * 4 2 1 33 33 H 1.08998 * 110.87206 * 336.82172 * 4 2 1 34 34 H 1.00903 * 111.00218 * 285.30521 * 7 5 4 35 35 H 1.09003 * 109.47044 * 300.00764 * 8 7 5 36 36 H 1.09005 * 109.47118 * 59.99896 * 8 7 5 37 37 H 0.97003 * 119.99878 * 0.02562 * 11 9 8 38 38 H 0.97002 * 119.99725 * 180.02562 * 15 14 12 39 39 H 1.08997 * 110.36068 * 81.82924 * 20 5 4 40 40 H 1.09001 * 110.36682 * 204.03884 * 20 5 4 41 41 H 1.08007 * 123.45871 * 0.02562 * 25 24 22 42 42 H 1.07999 * 124.71591 * 180.17665 * 26 25 24 43 43 H 1.07995 * 124.58860 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5132 -0.6946 6 1 4.1654 -0.8679 -0.6617 7 7 3.5539 -2.7207 -1.4877 8 6 4.9266 -3.1984 -1.2747 9 6 5.1621 -4.4357 -2.1021 10 8 4.2739 -4.8760 -2.8009 11 7 6.3599 -5.0524 -2.0664 12 6 6.5742 -6.1778 -2.8196 13 1 5.7834 -6.5698 -3.4418 14 6 7.8090 -6.8139 -2.7823 15 7 8.7712 -6.3371 -2.0248 16 14 8.1008 -8.3477 -3.8079 17 1 8.6201 -7.9585 -5.1436 18 1 9.0919 -9.2181 -3.1259 19 1 6.8223 -9.0856 -3.9696 20 6 2.8146 -1.8804 0.7341 21 7 2.0308 -0.7163 1.1856 22 6 1.8103 -0.3676 2.4686 23 8 1.2433 0.6773 2.7261 24 6 2.2559 -1.2510 3.5583 25 6 2.7802 -2.5793 3.3427 26 6 3.1231 -3.1929 4.4690 27 16 2.8031 -2.1636 5.8542 28 6 2.2108 -0.9025 4.8723 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5295 0.8808 31 1 -0.3634 0.4980 -0.8989 32 1 2.3529 -0.0430 -2.0201 33 1 1.3064 -1.4435 -1.6232 34 1 2.8827 -3.4449 -1.2802 35 1 5.6317 -2.4222 -1.5722 36 1 5.0697 -3.4343 -0.2202 37 1 7.0703 -4.7001 -1.5078 38 1 9.6333 -6.7811 -1.9991 39 1 2.1887 -2.7724 0.7088 40 1 3.6717 -2.0377 1.3888 41 1 2.8860 -3.0263 2.3651 42 1 3.5370 -4.1888 4.5255 43 1 1.8480 0.0446 5.2432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755670048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:17 Heat of formation + Delta-G solvation = -20.427472 kcal Electronic energy + Delta-G solvation = -26425.403687 eV Core-core repulsion = 22597.672449 eV Total energy + Delta-G solvation = -3827.731238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69561 -38.60987 -37.91462 -37.01774 -34.88319 -33.84632 -32.09930 -31.29563 -30.15507 -29.96275 -26.45834 -26.12842 -25.44835 -24.07709 -22.34384 -20.99899 -20.54446 -19.41548 -19.18024 -18.11860 -17.96355 -16.93640 -16.27637 -16.20398 -15.58543 -15.28089 -14.70356 -14.61994 -14.49675 -14.30508 -13.80781 -13.73246 -13.42054 -13.22017 -13.11208 -12.95845 -12.87201 -12.57712 -12.48768 -12.24206 -12.17114 -11.73678 -11.56608 -11.53067 -11.12332 -11.09577 -11.01379 -10.81980 -10.42953 -10.26196 -10.11573 -9.55704 -9.36759 -8.92291 -8.73501 -8.54477 -8.17812 -8.01393 -6.46405 -3.87415 0.51502 1.23430 1.58232 1.71471 2.76563 3.11892 3.14721 3.23931 3.29321 3.84008 3.94553 4.17304 4.30265 4.41735 4.48629 4.68055 4.83818 4.88193 5.00160 5.06296 5.09905 5.14773 5.17694 5.21541 5.32513 5.44166 5.49512 5.53368 5.68450 5.73952 5.77758 5.84928 5.89219 5.91028 5.96272 6.09503 6.20542 6.23363 7.06052 7.27931 7.49239 7.50945 7.96481 8.01051 8.55588 9.13030 9.48700 9.99638 10.71146 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.002638 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.601350 B =10612.343889 C =12509.513191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.077 3.923 6 H 0.096 0.904 7 N -0.651 5.651 8 C 0.048 3.952 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.057 3.943 21 N -0.604 5.604 22 C 0.596 3.404 23 O -0.541 6.541 24 C -0.161 4.161 25 C -0.129 4.129 26 C -0.229 4.229 27 S 0.182 5.818 28 C -0.182 4.182 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.353 0.647 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 10.855 13.935 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.035 4.035 6 H 0.115 0.885 7 N -0.282 5.282 8 C -0.085 4.085 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.068 4.068 21 N -0.338 5.338 22 C 0.385 3.615 23 O -0.420 6.420 24 C -0.178 4.178 25 C -0.157 4.157 26 C -0.364 4.364 27 S 0.447 5.553 28 C -0.320 4.320 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.182 0.818 42 H 0.189 0.811 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.100 11.193 14.671 21.534 hybrid contribution 0.534 -0.814 -0.746 1.226 sum -10.565 10.380 13.925 20.329 Atomic orbital electron populations 1.22126 0.94602 1.02415 1.02799 1.21691 0.94707 0.96529 0.83856 0.90339 1.22753 0.97478 0.99456 0.95838 1.22859 0.98442 0.93647 0.88545 0.88550 1.60125 1.03850 1.07607 1.56620 1.21754 0.90996 0.97702 0.98006 1.19757 0.84211 0.86513 0.87065 1.90534 1.43910 1.67586 1.44713 1.41863 1.11541 1.25359 1.41096 1.19702 0.98679 1.02411 1.22185 0.87890 1.25262 0.95255 0.99639 0.97702 1.69608 1.04251 1.41174 1.39183 0.85862 0.78321 0.80783 0.79369 1.20355 1.20928 1.19392 1.23704 0.95647 0.89266 0.98225 1.48300 1.52352 1.28374 1.04741 1.17236 0.78733 0.84778 0.80788 1.90776 1.43579 1.24431 1.83225 1.20214 1.08468 0.95866 0.93269 1.22034 0.99734 0.93317 1.00630 1.25619 1.09917 1.05107 0.95721 1.83113 1.57946 1.04733 1.09468 1.25578 1.04375 1.05162 0.96905 0.92380 0.91613 0.91356 0.89366 0.89603 0.82672 0.89338 0.93711 0.77452 0.91828 0.90747 0.89493 0.81812 0.81115 0.80792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.11 37.16 0.34 -1.26 16 2 C 0.14 1.40 3.44 -66.80 -0.23 1.17 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.14 6.17 -24.90 -0.15 -1.29 16 5 C 0.08 0.83 3.32 -65.57 -0.22 0.61 16 6 H 0.10 1.02 7.92 -51.93 -0.41 0.61 16 7 N -0.65 -9.14 6.00 -105.73 -0.63 -9.77 16 8 C 0.05 0.76 6.04 -4.98 -0.03 0.72 16 9 C 0.44 9.75 7.82 -10.99 -0.09 9.67 16 10 O -0.58 -15.10 15.78 5.55 0.09 -15.01 16 11 N -0.56 -13.63 5.29 -10.97 -0.06 -13.69 16 12 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 13 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16 16 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C 0.06 0.57 4.55 -2.53 -0.01 0.55 16 21 N -0.60 -6.80 3.07 -164.15 -0.50 -7.30 16 22 C 0.60 7.80 7.56 -12.63 -0.10 7.70 16 23 O -0.54 -8.52 16.07 5.24 0.08 -8.44 16 24 C -0.16 -1.82 5.92 -104.63 -0.62 -2.44 16 25 C -0.13 -1.26 8.65 -39.02 -0.34 -1.60 16 26 C -0.23 -1.94 11.12 28.86 0.32 -1.61 16 27 S 0.18 1.41 23.02 -107.50 -2.48 -1.07 16 28 C -0.18 -1.80 10.53 29.93 0.32 -1.49 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.77 7.14 -51.93 -0.37 0.40 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.35 5.08 8.00 -39.29 -0.31 4.77 16 35 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.07 0.71 7.14 -51.93 -0.37 0.34 16 40 H 0.09 0.83 5.95 -51.93 -0.31 0.52 16 41 H 0.16 1.47 4.25 -52.48 -0.22 1.25 16 42 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.17 1.62 8.03 -52.49 -0.42 1.20 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -32.26 369.07 -8.90 -41.16 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.62 Total: 13.21 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.05 Total: 2.97 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.47 Total: -53.92 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.26 -8.90 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.732 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds