Wall clock time and date at job start Tue Mar 31 2020 20:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.87143 * 2 1 4 4 C 1.54327 * 109.88041 * 238.98702 * 2 1 3 5 5 C 1.55156 * 102.94035 * 218.38772 * 4 2 1 6 6 H 1.08994 * 111.00401 * 277.43071 * 5 4 2 7 7 N 1.46892 * 111.00321 * 153.57527 * 5 4 2 8 8 C 1.46902 * 111.00226 * 161.35051 * 7 5 4 9 9 C 1.50697 * 109.47637 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00055 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00202 * 179.97438 * 9 8 7 12 12 C 1.37103 * 120.00049 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99860 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99766 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00247 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99736 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47012 * 89.99923 * 16 14 12 18 18 H 1.48495 * 109.47010 * 210.00201 * 16 14 12 19 19 H 1.48504 * 109.46931 * 330.00119 * 16 14 12 20 20 C 1.54916 * 101.58123 * 35.50056 * 5 4 2 21 21 N 1.47291 * 109.87594 * 121.13921 * 2 1 3 22 22 C 1.34774 * 125.79135 * 298.36554 * 21 2 1 23 23 O 1.21639 * 120.00384 * 353.75254 * 22 21 2 24 24 C 1.47188 * 119.99909 * 173.76018 * 22 21 2 25 25 C 1.44422 * 123.46145 * 351.85108 * 24 22 21 26 26 C 1.32769 * 113.08675 * 179.80633 * 25 24 22 27 27 S 1.75506 * 110.57518 * 0.44305 * 26 25 24 28 28 C 1.36013 * 123.46258 * 172.14284 * 24 22 21 29 29 H 1.09002 * 109.46973 * 181.01458 * 1 2 3 30 30 H 1.09004 * 109.47071 * 301.01004 * 1 2 3 31 31 H 1.09000 * 109.47284 * 61.01254 * 1 2 3 32 32 H 1.09002 * 110.71633 * 100.02802 * 4 2 1 33 33 H 1.08998 * 110.87206 * 336.82172 * 4 2 1 34 34 H 1.00903 * 111.00218 * 285.30521 * 7 5 4 35 35 H 1.09003 * 109.47044 * 300.00764 * 8 7 5 36 36 H 1.09005 * 109.47118 * 59.99896 * 8 7 5 37 37 H 0.97003 * 119.99878 * 0.02562 * 11 9 8 38 38 H 0.97002 * 119.99725 * 180.02562 * 15 14 12 39 39 H 1.08997 * 110.36068 * 81.82924 * 20 5 4 40 40 H 1.09001 * 110.36682 * 204.03884 * 20 5 4 41 41 H 1.08007 * 123.45871 * 0.02562 * 25 24 22 42 42 H 1.07999 * 124.71591 * 180.17665 * 26 25 24 43 43 H 1.07995 * 124.58860 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2876 -1.5132 -0.6946 6 1 4.1654 -0.8679 -0.6617 7 7 3.5539 -2.7207 -1.4877 8 6 4.9266 -3.1984 -1.2747 9 6 5.1621 -4.4357 -2.1021 10 8 4.2739 -4.8760 -2.8009 11 7 6.3599 -5.0524 -2.0664 12 6 6.5742 -6.1778 -2.8196 13 1 5.7834 -6.5698 -3.4418 14 6 7.8090 -6.8139 -2.7823 15 7 8.7712 -6.3371 -2.0248 16 14 8.1008 -8.3477 -3.8079 17 1 8.6201 -7.9585 -5.1436 18 1 9.0919 -9.2181 -3.1259 19 1 6.8223 -9.0856 -3.9696 20 6 2.8146 -1.8804 0.7341 21 7 2.0308 -0.7163 1.1856 22 6 1.8103 -0.3676 2.4686 23 8 1.2433 0.6773 2.7261 24 6 2.2559 -1.2510 3.5583 25 6 2.7802 -2.5793 3.3427 26 6 3.1231 -3.1929 4.4690 27 16 2.8031 -2.1636 5.8542 28 6 2.2108 -0.9025 4.8723 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5295 0.8808 31 1 -0.3634 0.4980 -0.8989 32 1 2.3529 -0.0430 -2.0201 33 1 1.3064 -1.4435 -1.6232 34 1 2.8827 -3.4449 -1.2802 35 1 5.6317 -2.4222 -1.5722 36 1 5.0697 -3.4343 -0.2202 37 1 7.0703 -4.7001 -1.5078 38 1 9.6333 -6.7811 -1.9991 39 1 2.1887 -2.7724 0.7088 40 1 3.6717 -2.0377 1.3888 41 1 2.8860 -3.0263 2.3651 42 1 3.5370 -4.1888 4.5255 43 1 1.8480 0.0446 5.2432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755670048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:16 Heat of formation + Delta-G solvation = -43.222534 kcal Electronic energy + Delta-G solvation = -26426.392155 eV Core-core repulsion = 22597.672449 eV Total energy + Delta-G solvation = -3828.719706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59338 -40.13854 -39.06253 -37.85442 -36.23211 -35.57656 -33.23664 -32.94617 -31.16220 -30.75113 -27.93343 -26.98986 -26.33623 -25.66153 -23.21438 -21.87634 -21.34712 -21.05041 -20.08787 -19.87681 -18.84428 -17.96486 -17.70388 -17.01663 -16.75165 -16.57519 -16.27470 -15.91265 -15.54292 -15.37103 -15.24283 -14.98293 -14.25639 -14.17032 -14.12457 -13.88911 -13.75673 -13.65194 -13.48547 -13.32292 -13.30182 -13.20355 -12.92682 -12.78079 -12.39614 -12.35373 -12.11041 -11.94549 -11.82624 -11.66579 -11.47605 -11.07652 -10.31011 -10.10975 -9.98074 -9.78014 -9.44218 -9.29485 -8.44090 -5.92170 -0.24075 0.57043 0.89726 0.94308 1.39932 1.44324 1.56158 1.89727 2.09512 2.22418 2.31248 2.88158 3.23899 3.37870 3.46840 3.68731 3.75531 3.88914 3.98764 4.08447 4.19766 4.32513 4.35203 4.37120 4.46072 4.46527 4.57803 4.61759 4.66178 4.74039 4.80275 4.94665 5.02541 5.09201 5.13782 5.19768 5.27787 5.40431 5.44261 5.89872 6.10583 6.34070 6.41305 6.63337 7.02329 7.16163 7.60435 8.15596 8.73103 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.002638 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.601350 B =10612.343889 C =12509.513191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.108 4.108 5 C 0.082 3.918 6 H 0.104 0.896 7 N -0.660 5.660 8 C 0.062 3.938 9 C 0.439 3.561 10 O -0.623 6.623 11 N -0.573 5.573 12 C -0.332 4.332 13 H 0.079 0.921 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.989 3.011 17 H -0.273 1.273 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.061 3.939 21 N -0.602 5.602 22 C 0.590 3.410 23 O -0.579 6.579 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.232 4.232 27 S 0.238 5.762 28 C -0.196 4.196 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.350 0.650 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.192 0.808 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 10.449 14.695 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.030 4.030 6 H 0.122 0.878 7 N -0.292 5.292 8 C -0.070 4.070 9 C 0.226 3.774 10 O -0.509 6.509 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.097 0.903 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.199 1.199 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.063 4.063 21 N -0.335 5.335 22 C 0.379 3.621 23 O -0.462 6.462 24 C -0.202 4.202 25 C -0.168 4.168 26 C -0.367 4.367 27 S 0.503 5.497 28 C -0.335 4.335 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.187 0.813 42 H 0.209 0.791 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.479 10.794 15.439 21.557 hybrid contribution 0.293 -0.654 -0.915 1.162 sum -10.186 10.140 14.524 20.433 Atomic orbital electron populations 1.22066 0.94358 1.02226 1.02660 1.21761 0.94933 0.96466 0.83822 0.90658 1.22696 0.96920 0.99370 0.95626 1.22847 0.99172 0.92347 0.88604 0.87773 1.60106 1.02828 1.08340 1.57930 1.21619 0.92467 0.94765 0.98123 1.20873 0.82765 0.87432 0.86298 1.90506 1.44961 1.69082 1.46385 1.41928 1.12535 1.25232 1.41362 1.19645 0.98781 1.04234 1.23468 0.90328 1.25975 0.94654 1.02014 0.98486 1.69663 1.04528 1.42135 1.39750 0.84982 0.78097 0.77541 0.78080 1.19869 1.19680 1.19708 1.23711 0.95941 0.88946 0.97750 1.48343 1.51966 1.28581 1.04571 1.17588 0.78301 0.84601 0.81594 1.90743 1.45487 1.26083 1.83837 1.20251 1.10167 0.96614 0.93202 1.22039 1.00511 0.92799 1.01449 1.25964 1.09020 1.05993 0.95741 1.82931 1.56017 1.02793 1.07922 1.25798 1.04300 1.06142 0.97265 0.92465 0.93708 0.89569 0.88330 0.89682 0.82992 0.87620 0.90811 0.76933 0.91374 0.90116 0.88612 0.81336 0.79107 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.11 71.98 0.66 -2.36 16 2 C 0.13 2.64 3.44 45.29 0.16 2.79 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -1.92 6.17 31.78 0.20 -1.72 16 5 C 0.08 1.58 3.32 46.31 0.15 1.74 16 6 H 0.10 1.92 7.92 -2.39 -0.02 1.90 16 7 N -0.66 -17.35 6.00 -488.41 -2.93 -20.29 16 8 C 0.06 1.84 6.04 85.56 0.52 2.35 16 9 C 0.44 19.29 7.82 87.66 0.69 19.98 16 10 O -0.62 -32.50 15.78 -3.07 -0.05 -32.54 16 11 N -0.57 -27.79 5.29 -306.99 -1.62 -29.42 16 12 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 13 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 14 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 15 N -0.92 -48.12 13.05 21.66 0.28 -47.84 16 16 Si 0.99 41.78 29.55 68.60 2.03 43.80 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.06 1.12 4.55 86.86 0.40 1.51 16 21 N -0.60 -13.13 3.07 -791.50 -2.43 -15.57 16 22 C 0.59 15.47 7.56 86.59 0.65 16.12 16 23 O -0.58 -18.79 16.07 -4.16 -0.07 -18.85 16 24 C -0.18 -4.07 5.92 -19.87 -0.12 -4.19 16 25 C -0.14 -2.52 8.65 22.67 0.20 -2.32 16 26 C -0.23 -3.39 11.12 66.64 0.74 -2.65 16 27 S 0.24 3.18 23.02 -56.49 -1.30 1.87 16 28 C -0.20 -3.76 10.53 67.30 0.71 -3.06 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.07 7.14 -2.39 -0.02 1.05 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.57 7.86 -2.39 -0.02 1.55 16 34 H 0.35 9.60 8.00 -89.69 -0.72 8.89 16 35 H 0.11 2.82 8.09 -2.39 -0.02 2.80 16 36 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.40 18.19 7.90 -92.71 -0.73 17.46 16 38 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 39 H 0.08 1.41 7.14 -2.39 -0.02 1.39 16 40 H 0.10 1.62 5.95 -2.39 -0.01 1.60 16 41 H 0.17 2.72 4.25 -2.91 -0.01 2.71 16 42 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.17 3.23 8.03 -2.91 -0.02 3.21 16 Total: -1.00 -70.29 369.07 -0.25 -70.54 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.38 Total: 37.57 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.22 Total: 10.72 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -6.70 Total: -113.11 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.12 Total: -51.40 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.30 Total: 1.87 kcal Total: -70.29 -0.25 -70.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.317 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds