Wall clock time and date at job start Tue Mar 31 2020 20:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46649 * 2 1 4 4 N 1.46493 * 109.47312 * 120.00019 * 2 1 3 5 5 C 1.34776 * 120.00435 * 275.00075 * 4 2 1 6 6 O 1.21700 * 119.99354 * 0.02562 * 5 4 2 7 7 C 1.46679 * 120.00261 * 179.97438 * 5 4 2 8 8 C 1.37867 * 126.22973 * 180.02562 * 7 5 4 9 9 C 1.39843 * 107.08397 * 180.02562 * 8 7 5 10 10 C 1.35457 * 107.86071 * 359.97438 * 9 8 7 11 11 N 1.35533 * 108.87474 * 0.23019 * 10 9 8 12 12 H 0.96993 * 125.68142 * 179.75463 * 11 10 9 13 13 C 1.53004 * 109.46861 * 240.00183 * 2 1 3 14 14 C 1.53947 * 113.73960 * 158.73821 * 13 2 1 15 15 N 1.47812 * 86.03695 * 222.08314 * 14 13 2 16 16 C 1.34774 * 134.45472 * 204.64081 * 15 14 13 17 17 O 1.21285 * 119.99730 * 179.86968 * 16 15 14 18 18 C 1.50702 * 120.00330 * 359.86959 * 16 15 14 19 19 S 1.80997 * 109.47387 * 179.97438 * 18 16 15 20 20 C 1.76191 * 100.00245 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99814 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00451 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99374 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00335 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47450 * 89.99456 * 24 22 20 26 26 H 1.48503 * 109.47240 * 209.99745 * 24 22 20 27 27 H 1.48501 * 109.47068 * 329.99679 * 24 22 20 28 28 C 1.47578 * 91.05201 * 24.55277 * 15 14 13 29 29 H 1.09003 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46906 * 299.99525 * 1 2 3 31 31 H 1.09002 * 109.47495 * 59.99800 * 1 2 3 32 32 H 0.97005 * 119.99626 * 94.99852 * 4 2 1 33 33 H 1.08004 * 126.46177 * 359.97137 * 8 7 5 34 34 H 1.07994 * 126.06745 * 179.97438 * 9 8 7 35 35 H 1.08002 * 125.55847 * 179.97438 * 10 9 8 36 36 H 1.08991 * 112.94529 * 290.32989 * 13 2 1 37 37 H 1.09009 * 113.77039 * 336.35068 * 14 13 2 38 38 H 1.08995 * 113.76862 * 107.74506 * 14 13 2 39 39 H 1.08993 * 109.47333 * 300.00156 * 18 16 15 40 40 H 1.09002 * 109.46581 * 60.00113 * 18 16 15 41 41 H 0.97007 * 119.99372 * 180.02562 * 23 22 20 42 42 H 1.08996 * 113.76868 * 221.15476 * 28 15 14 43 43 H 1.08997 * 113.87540 * 89.76257 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8572 1.1624 2.4118 7 6 2.6356 -0.7099 3.5548 8 6 2.8153 -0.1509 4.8022 9 6 3.2936 -1.1627 5.6408 10 6 3.3948 -2.2970 4.9073 11 7 3.0025 -2.0341 3.6369 12 1 2.9821 -2.6730 2.9074 13 6 2.0400 -0.7212 -1.2493 14 6 3.4847 -0.3520 -1.6318 15 7 2.9977 -0.3176 -3.0270 16 6 3.5781 -0.4730 -4.2334 17 8 2.9102 -0.3922 -5.2425 18 6 5.0569 -0.7473 -4.3285 19 16 5.5305 -0.9058 -6.0682 20 6 7.2558 -1.2145 -5.8888 21 1 7.6976 -1.2552 -4.9041 22 6 8.0474 -1.4053 -7.0129 23 7 7.5089 -1.3561 -8.2130 24 14 9.8765 -1.7333 -6.8226 25 1 10.1087 -3.1962 -6.7162 26 1 10.6004 -1.2019 -8.0053 27 1 10.3745 -1.0626 -5.5948 28 6 1.6213 -0.0471 -2.5685 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 2.6238 0.8752 5.0794 34 1 3.5387 -1.0582 6.6873 35 1 3.7367 -3.2536 5.2740 36 1 1.8528 -1.7947 -1.2264 37 1 3.8047 0.6192 -1.2540 38 1 4.2070 -1.1446 -1.4368 39 1 5.6090 0.0758 -3.8749 40 1 5.2891 -1.6737 -3.8033 41 1 8.0620 -1.4899 -8.9986 42 1 0.8586 -0.5968 -3.1200 43 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756129365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:37 Heat of formation + Delta-G solvation = 8.271829 kcal Electronic energy + Delta-G solvation = -25435.342208 eV Core-core repulsion = 21608.855465 eV Total energy + Delta-G solvation = -3826.486743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69808 -40.58099 -39.32711 -37.69457 -35.44728 -32.45974 -32.15552 -31.29003 -30.18452 -29.25180 -27.96285 -26.19425 -25.46683 -24.43829 -22.63733 -21.17364 -20.86709 -20.44588 -19.27454 -19.05644 -17.73331 -16.93182 -16.66241 -16.31276 -15.65209 -15.39571 -15.28067 -14.83208 -14.59710 -14.28749 -14.16691 -14.07447 -13.91527 -13.66374 -13.15543 -13.01836 -12.93607 -12.77106 -12.69924 -12.53239 -12.47624 -12.02053 -11.85758 -11.24543 -11.11883 -11.08810 -11.04361 -10.78998 -10.46031 -9.85215 -9.66470 -9.44936 -9.36793 -9.09649 -8.67593 -8.65261 -8.27422 -6.53955 -6.24539 -3.95624 1.05507 2.33460 2.56786 2.66627 2.69774 3.01520 3.03260 3.19743 3.21602 3.27631 3.51109 3.94210 4.17234 4.27160 4.43829 4.55504 4.61955 4.70169 4.90256 4.93009 4.97881 5.02908 5.06736 5.10653 5.22671 5.26326 5.31416 5.43648 5.53125 5.54570 5.64098 5.75517 5.76332 5.84202 5.87331 5.98052 6.03293 6.10030 6.25715 6.47375 6.86117 7.06323 7.56453 7.75580 7.76736 8.32147 8.49817 9.20591 10.82894 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002149 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.062654 B =13028.362281 C =14711.834020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.097 0.903 4 N -0.726 5.726 5 C 0.591 3.409 6 O -0.526 6.526 7 C -0.059 4.059 8 C -0.105 4.105 9 C -0.213 4.213 10 C 0.024 3.976 11 N -0.541 5.541 12 H 0.416 0.584 13 C -0.135 4.135 14 C 0.109 3.891 15 N -0.652 5.652 16 C 0.556 3.444 17 O -0.514 6.514 18 C -0.145 4.145 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.272 1.272 28 C 0.121 3.879 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.394 0.606 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.269 0.731 42 H 0.085 0.915 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 -2.804 27.666 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.115 0.885 4 N -0.378 5.378 5 C 0.379 3.621 6 O -0.402 6.402 7 C -0.172 4.172 8 C -0.132 4.132 9 C -0.237 4.237 10 C -0.112 4.112 11 N -0.137 5.137 12 H 0.253 0.747 13 C -0.154 4.154 14 C -0.014 4.014 15 N -0.391 5.391 16 C 0.345 3.655 17 O -0.388 6.388 18 C -0.295 4.295 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.002 4.002 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.227 0.773 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.189 0.811 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.221 -1.916 25.593 28.870 hybrid contribution 2.182 -1.177 1.012 2.678 sum -11.039 -3.093 26.604 28.969 Atomic orbital electron populations 1.22174 0.94469 1.02484 1.03111 1.20996 0.94587 0.97411 0.82136 0.88463 1.45949 1.68285 1.13668 1.09853 1.17056 0.77295 0.86226 0.81516 1.90864 1.50244 1.14761 1.84334 1.20440 1.15191 0.84744 0.96822 1.21372 1.01093 0.99924 0.90796 1.20948 1.09546 0.92740 1.00482 1.22084 1.04533 1.00763 0.83805 1.42035 1.51016 1.09596 1.11036 0.74697 1.23519 0.96714 1.01440 0.93735 1.23254 0.96079 1.01979 0.80124 1.50037 1.10560 1.73437 1.05056 1.20053 0.89285 0.75278 0.80849 1.90717 1.64738 1.49442 1.33886 1.23470 0.93404 1.04366 1.08304 1.85407 1.08510 1.93449 0.95996 1.22846 0.93187 1.56742 0.95580 0.90964 1.25001 0.99479 0.94688 0.94447 1.70022 1.36277 1.46259 0.97660 0.86155 0.82739 0.78578 0.77949 1.20265 1.20698 1.19689 1.22994 0.86324 1.00464 0.90445 0.92265 0.91752 0.90974 0.77260 0.83454 0.83841 0.81126 0.87481 0.89559 0.89899 0.89362 0.89444 0.92148 0.89693 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.31 37.16 0.35 -0.72 16 2 C 0.15 1.05 2.38 -67.93 -0.16 0.89 16 3 H 0.10 0.83 7.41 -51.93 -0.39 0.45 16 4 N -0.73 -4.51 5.07 -55.11 -0.28 -4.79 16 5 C 0.59 5.45 7.75 -12.85 -0.10 5.35 16 6 O -0.53 -6.83 16.55 5.19 0.09 -6.75 16 7 C -0.06 -0.48 7.06 -81.98 -0.58 -1.05 16 8 C -0.11 -0.89 10.65 -39.12 -0.42 -1.31 16 9 C -0.21 -1.37 10.81 -39.97 -0.43 -1.81 16 10 C 0.02 0.11 11.89 -16.91 -0.20 -0.09 16 11 N -0.54 -2.61 5.99 -9.39 -0.06 -2.67 16 12 H 0.42 0.76 8.19 -40.82 -0.33 0.43 16 13 C -0.13 -0.95 3.47 -89.69 -0.31 -1.26 16 14 C 0.11 1.02 8.19 -2.84 -0.02 1.00 16 15 N -0.65 -9.00 3.61 -178.14 -0.64 -9.64 16 16 C 0.56 10.77 8.08 -10.99 -0.09 10.68 16 17 O -0.51 -12.08 16.59 5.55 0.09 -11.99 16 18 C -0.14 -2.99 5.91 36.01 0.21 -2.78 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.12 1.21 7.54 -2.96 -0.02 1.19 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.42 7.52 -51.93 -0.39 0.03 16 32 H 0.39 1.38 7.73 -40.82 -0.32 1.06 16 33 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.77 7.99 -51.92 -0.41 0.36 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -38.61 384.72 -9.12 -47.73 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.03 Total: -1.86 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.58 Total: -2.89 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.25 Total: -42.52 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.61 -9.12 -47.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756129365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.002 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds