Wall clock time and date at job start Tue Mar 31 2020 20:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46649 * 2 1 4 4 N 1.46493 * 109.47312 * 120.00019 * 2 1 3 5 5 C 1.34776 * 120.00435 * 275.00075 * 4 2 1 6 6 O 1.21700 * 119.99354 * 0.02562 * 5 4 2 7 7 C 1.46679 * 120.00261 * 179.97438 * 5 4 2 8 8 C 1.37867 * 126.22973 * 180.02562 * 7 5 4 9 9 C 1.39843 * 107.08397 * 180.02562 * 8 7 5 10 10 C 1.35457 * 107.86071 * 359.97438 * 9 8 7 11 11 N 1.35533 * 108.87474 * 0.23019 * 10 9 8 12 12 H 0.96993 * 125.68142 * 179.75463 * 11 10 9 13 13 C 1.53004 * 109.46861 * 240.00183 * 2 1 3 14 14 C 1.53947 * 113.73960 * 158.73821 * 13 2 1 15 15 N 1.47812 * 86.03695 * 222.08314 * 14 13 2 16 16 C 1.34774 * 134.45472 * 204.64081 * 15 14 13 17 17 O 1.21285 * 119.99730 * 179.86968 * 16 15 14 18 18 C 1.50702 * 120.00330 * 359.86959 * 16 15 14 19 19 S 1.80997 * 109.47387 * 179.97438 * 18 16 15 20 20 C 1.76191 * 100.00245 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99814 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00451 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99374 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00335 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47450 * 89.99456 * 24 22 20 26 26 H 1.48503 * 109.47240 * 209.99745 * 24 22 20 27 27 H 1.48501 * 109.47068 * 329.99679 * 24 22 20 28 28 C 1.47578 * 91.05201 * 24.55277 * 15 14 13 29 29 H 1.09003 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46906 * 299.99525 * 1 2 3 31 31 H 1.09002 * 109.47495 * 59.99800 * 1 2 3 32 32 H 0.97005 * 119.99626 * 94.99852 * 4 2 1 33 33 H 1.08004 * 126.46177 * 359.97137 * 8 7 5 34 34 H 1.07994 * 126.06745 * 179.97438 * 9 8 7 35 35 H 1.08002 * 125.55847 * 179.97438 * 10 9 8 36 36 H 1.08991 * 112.94529 * 290.32989 * 13 2 1 37 37 H 1.09009 * 113.77039 * 336.35068 * 14 13 2 38 38 H 1.08995 * 113.76862 * 107.74506 * 14 13 2 39 39 H 1.08993 * 109.47333 * 300.00156 * 18 16 15 40 40 H 1.09002 * 109.46581 * 60.00113 * 18 16 15 41 41 H 0.97007 * 119.99372 * 180.02562 * 23 22 20 42 42 H 1.08996 * 113.76868 * 221.15476 * 28 15 14 43 43 H 1.08997 * 113.87540 * 89.76257 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8572 1.1624 2.4118 7 6 2.6356 -0.7099 3.5548 8 6 2.8153 -0.1509 4.8022 9 6 3.2936 -1.1627 5.6408 10 6 3.3948 -2.2970 4.9073 11 7 3.0025 -2.0341 3.6369 12 1 2.9821 -2.6730 2.9074 13 6 2.0400 -0.7212 -1.2493 14 6 3.4847 -0.3520 -1.6318 15 7 2.9977 -0.3176 -3.0270 16 6 3.5781 -0.4730 -4.2334 17 8 2.9102 -0.3922 -5.2425 18 6 5.0569 -0.7473 -4.3285 19 16 5.5305 -0.9058 -6.0682 20 6 7.2558 -1.2145 -5.8888 21 1 7.6976 -1.2552 -4.9041 22 6 8.0474 -1.4053 -7.0129 23 7 7.5089 -1.3561 -8.2130 24 14 9.8765 -1.7333 -6.8226 25 1 10.1087 -3.1962 -6.7162 26 1 10.6004 -1.2019 -8.0053 27 1 10.3745 -1.0626 -5.5948 28 6 1.6213 -0.0471 -2.5685 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 2.6238 0.8752 5.0794 34 1 3.5387 -1.0582 6.6873 35 1 3.7367 -3.2536 5.2740 36 1 1.8528 -1.7947 -1.2264 37 1 3.8047 0.6192 -1.2540 38 1 4.2070 -1.1446 -1.4368 39 1 5.6090 0.0758 -3.8749 40 1 5.2891 -1.6737 -3.8033 41 1 8.0620 -1.4899 -8.9986 42 1 0.8586 -0.5968 -3.1200 43 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756129365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:36 Heat of formation + Delta-G solvation = -20.282900 kcal Electronic energy + Delta-G solvation = -25436.580434 eV Core-core repulsion = 21608.855465 eV Total energy + Delta-G solvation = -3827.724969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21110 -41.50198 -40.16514 -38.96149 -36.24234 -34.61213 -32.92286 -31.90848 -31.39151 -29.82936 -29.02030 -27.72012 -26.99763 -25.14415 -23.34772 -21.83065 -21.39470 -20.99136 -20.48377 -19.72625 -19.55030 -18.04701 -17.63591 -16.99562 -16.92766 -16.84394 -16.38452 -16.18422 -15.83008 -15.37730 -14.94320 -14.83410 -14.69268 -14.53547 -14.45293 -14.10161 -13.79507 -13.62165 -13.52810 -13.34560 -13.21406 -13.15945 -13.07974 -12.90516 -12.72139 -12.62477 -11.91101 -11.87177 -11.75984 -11.23477 -11.16513 -10.93116 -10.32371 -10.23503 -9.92192 -9.80069 -9.15385 -8.71337 -8.37061 -6.16287 0.48817 1.18665 1.41138 1.41259 1.52001 1.55044 1.86796 1.92447 2.01556 2.24974 2.28111 2.39334 2.97042 3.15747 3.22809 3.58193 3.63656 3.91639 4.04389 4.09276 4.21123 4.35636 4.37161 4.41262 4.43327 4.44715 4.46962 4.53891 4.56778 4.65384 4.76906 4.85116 4.98596 5.13582 5.15240 5.29621 5.32256 5.38827 5.43435 5.77057 5.95662 6.17137 6.45289 6.52761 6.65085 7.03846 7.07109 7.14544 8.72244 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002149 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.062654 B =13028.362281 C =14711.834020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.160 3.840 3 H 0.081 0.919 4 N -0.710 5.710 5 C 0.591 3.409 6 O -0.574 6.574 7 C -0.080 4.080 8 C -0.131 4.131 9 C -0.233 4.233 10 C 0.044 3.956 11 N -0.526 5.526 12 H 0.432 0.568 13 C -0.103 4.103 14 C 0.103 3.897 15 N -0.650 5.650 16 C 0.553 3.447 17 O -0.569 6.569 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.001 2.999 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.258 1.258 28 C 0.112 3.888 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.210 0.790 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.272 0.728 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -4.877 30.281 32.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.099 0.901 4 N -0.361 5.361 5 C 0.380 3.620 6 O -0.453 6.453 7 C -0.193 4.193 8 C -0.159 4.159 9 C -0.256 4.256 10 C -0.093 4.093 11 N -0.123 5.123 12 H 0.272 0.728 13 C -0.122 4.122 14 C -0.019 4.019 15 N -0.386 5.386 16 C 0.342 3.658 17 O -0.448 6.448 18 C -0.270 4.270 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.010 4.010 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.227 0.773 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.241 -4.031 28.257 31.058 hybrid contribution 1.769 -0.523 0.379 1.883 sum -10.472 -4.554 28.636 30.829 Atomic orbital electron populations 1.22140 0.93860 1.03316 1.02593 1.20849 0.94927 0.96632 0.82082 0.90099 1.45749 1.67276 1.14315 1.08781 1.17237 0.76717 0.85717 0.82362 1.90837 1.52532 1.16852 1.85127 1.20221 1.16735 0.86194 0.96164 1.21524 1.02208 1.00135 0.92007 1.21212 1.10219 0.92910 1.01307 1.22693 1.01985 1.01536 0.83112 1.42006 1.49895 1.08612 1.11807 0.72798 1.23297 0.94475 1.02406 0.92062 1.23631 0.97970 1.03273 0.77010 1.50064 1.12720 1.70944 1.04892 1.19761 0.88523 0.75565 0.81980 1.90690 1.65491 1.52400 1.36219 1.23265 0.94980 1.05846 1.02904 1.85594 1.09699 1.93824 1.03322 1.23171 0.93190 1.56745 0.96262 0.89972 1.26161 1.05129 0.94054 0.93881 1.70190 1.38433 1.47381 0.98709 0.84925 0.75607 0.78902 0.78366 1.19086 1.20293 1.18241 1.23331 0.84428 1.01726 0.91499 0.90730 0.93484 0.90360 0.75282 0.84924 0.82619 0.77287 0.85074 0.88778 0.88132 0.88066 0.87435 0.91935 0.89576 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.31 71.98 0.67 -1.10 16 2 C 0.16 1.83 2.38 45.00 0.11 1.94 16 3 H 0.08 1.28 7.41 -2.39 -0.02 1.27 16 4 N -0.71 -7.15 5.07 -446.49 -2.27 -9.41 16 5 C 0.59 10.41 7.75 86.45 0.67 11.08 16 6 O -0.57 -15.26 16.55 -4.35 -0.07 -15.33 16 7 C -0.08 -1.19 7.06 40.35 0.28 -0.91 16 8 C -0.13 -2.22 10.65 22.57 0.24 -1.98 16 9 C -0.23 -2.63 10.81 22.02 0.24 -2.39 16 10 C 0.04 0.27 11.89 83.48 0.99 1.26 16 11 N -0.53 -3.52 5.99 -183.62 -1.10 -4.62 16 12 H 0.43 -0.10 8.19 -92.71 -0.76 -0.85 16 13 C -0.10 -1.12 3.47 -10.13 -0.04 -1.16 16 14 C 0.10 1.61 8.19 86.44 0.71 2.32 16 15 N -0.65 -16.78 3.61 -835.91 -3.02 -19.79 16 16 C 0.55 21.26 8.08 87.66 0.71 21.96 16 17 O -0.57 -27.46 16.59 -3.04 -0.05 -27.51 16 18 C -0.12 -4.85 5.91 71.24 0.42 -4.43 16 19 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 20 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 24 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 28 C 0.11 2.02 7.54 86.49 0.65 2.67 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.77 7.52 -2.39 -0.02 0.75 16 32 H 0.41 1.38 7.73 -92.70 -0.72 0.66 16 33 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 35 H 0.21 -0.39 8.06 -2.91 -0.02 -0.42 16 36 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.42 7.99 -2.38 -0.02 1.40 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -89.18 384.72 0.98 -88.19 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.43 Total: 8.67 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.77 Total: -0.16 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -6.10 Total: -89.58 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.12 Total: -42.84 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -89.18 0.98 -88.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756129365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.910 kcal (2) G-P(sol) polarization free energy of solvation -89.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds