Wall clock time and date at job start Tue Mar 31 2020 20:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.99816 * 2 1 4 4 C 1.54319 * 109.88003 * 121.09363 * 2 1 3 5 5 H 1.09004 * 110.72568 * 260.15022 * 4 2 1 6 6 N 1.46504 * 110.72381 * 23.24716 * 4 2 1 7 7 C 1.34773 * 120.00009 * 202.55839 * 6 4 2 8 8 O 1.21277 * 120.00238 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99592 * 179.97438 * 7 6 4 10 10 S 1.81011 * 109.46946 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00065 * 179.97438 * 10 9 7 12 12 H 1.08009 * 119.99698 * 0.02562 * 11 10 9 13 13 C 1.38794 * 120.00092 * 179.97438 * 11 10 9 14 14 N 1.31632 * 119.99780 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47259 * 179.97438 * 15 13 11 17 17 H 1.48509 * 109.46901 * 300.00074 * 15 13 11 18 18 H 1.48496 * 109.47145 * 59.99688 * 15 13 11 19 19 C 1.55163 * 103.10444 * 141.69868 * 4 2 1 20 20 C 1.54912 * 101.57699 * 324.41024 * 19 4 2 21 21 N 1.47423 * 104.83157 * 37.00598 * 20 19 4 22 22 C 1.34786 * 125.64384 * 155.92705 * 21 20 19 23 23 O 1.21685 * 119.99628 * 178.17074 * 22 21 20 24 24 C 1.46682 * 120.00118 * 358.17490 * 22 21 20 25 25 C 1.37867 * 126.23174 * 188.02600 * 24 22 21 26 26 C 1.39841 * 107.08463 * 179.97438 * 25 24 22 27 27 C 1.35452 * 107.86189 * 0.02562 * 26 25 24 28 28 N 1.35535 * 108.87370 * 359.73201 * 27 26 25 29 29 H 0.97003 * 125.67960 * 180.30535 * 28 27 26 30 30 H 1.09001 * 109.46697 * 298.90883 * 1 2 3 31 31 H 1.09002 * 109.46662 * 58.90376 * 1 2 3 32 32 H 1.08994 * 109.47070 * 178.90588 * 1 2 3 33 33 H 0.97000 * 119.99548 * 22.55967 * 6 4 2 34 34 H 1.09002 * 109.47534 * 60.00545 * 9 7 6 35 35 H 1.09004 * 109.47668 * 299.99747 * 9 7 6 36 36 H 0.97001 * 119.99444 * 180.02562 * 14 13 11 37 37 H 1.09001 * 111.00161 * 82.47890 * 19 4 2 38 38 H 1.08993 * 111.00497 * 206.29881 * 19 4 2 39 39 H 1.09001 * 110.36332 * 155.84937 * 20 19 4 40 40 H 1.08997 * 110.36514 * 278.05603 * 20 19 4 41 41 H 1.07996 * 126.46024 * 359.96416 * 25 24 22 42 42 H 1.07999 * 126.06858 * 179.97438 * 26 25 24 43 43 H 1.08003 * 125.56342 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3500 -0.0460 2.0213 6 7 1.0472 -1.6855 1.7475 7 6 1.0898 -2.0939 3.0312 8 8 1.9621 -1.6863 3.7685 9 6 0.0529 -3.0563 3.5505 10 16 0.3776 -3.4090 5.2959 11 6 -0.9444 -4.5238 5.6339 12 1 -1.6434 -4.7851 4.8530 13 6 -1.0868 -5.0671 6.9031 14 7 -0.2345 -4.7490 7.8545 15 14 -2.4879 -6.2495 7.2612 16 1 -2.4184 -6.6844 8.6794 17 1 -3.7848 -5.5695 7.0144 18 1 -2.3740 -7.4350 6.3743 19 6 3.2897 -1.5141 0.6970 20 6 2.8201 -1.8832 -0.7324 21 7 2.0353 -0.7198 -1.1839 22 6 1.8147 -0.3713 -2.4671 23 8 1.1209 0.5947 -2.7245 24 6 2.4110 -1.1564 -3.5532 25 6 2.4014 -0.8323 -4.8932 26 6 3.0795 -1.8527 -5.5675 27 6 3.4820 -2.7622 -4.6480 28 7 3.0868 -2.3481 -3.4195 29 1 3.2515 -2.8146 -2.5851 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0274 -0.0196 33 1 0.3493 -2.0112 1.1578 34 1 0.0978 -3.9827 2.9778 35 1 -0.9378 -2.6133 3.4479 36 1 -0.3339 -5.1290 8.7415 37 1 4.1668 -0.8677 0.6653 38 1 3.4874 -2.4089 1.2871 39 1 3.6789 -2.0382 -1.3856 40 1 2.1969 -2.7770 -0.7079 41 1 1.9544 0.0442 -5.3384 42 1 3.2511 -1.9064 -6.6324 43 1 4.0324 -3.6672 -4.8588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756553838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:35 Heat of formation + Delta-G solvation = -3.942168 kcal Electronic energy + Delta-G solvation = -26330.079367 eV Core-core repulsion = 22503.062985 eV Total energy + Delta-G solvation = -3827.016381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82420 -40.49691 -39.02614 -37.60159 -34.27599 -32.47805 -32.07812 -31.54643 -31.08432 -29.52354 -28.61156 -26.22955 -25.51082 -24.12358 -22.28550 -21.47747 -20.84307 -20.41781 -19.89271 -18.15652 -17.88999 -17.22368 -16.61982 -16.30597 -15.78511 -15.23864 -15.13380 -14.84781 -14.64697 -14.28537 -14.07963 -14.04204 -13.70456 -13.54116 -13.42826 -13.26797 -12.99615 -12.67175 -12.63618 -12.59076 -12.28463 -11.94999 -11.66006 -11.55761 -11.22386 -11.09174 -11.07729 -10.81132 -10.33317 -9.87907 -9.54290 -9.40187 -9.17885 -9.12231 -9.06128 -8.59251 -8.31001 -6.56135 -6.26528 -3.97727 1.12366 2.38275 2.40093 2.76679 2.90976 2.94150 3.06251 3.19954 3.23751 3.26500 3.60116 3.90902 4.05027 4.15731 4.32669 4.56522 4.67100 4.69905 4.81097 4.85020 4.98800 5.00611 5.07880 5.08741 5.11316 5.32595 5.39516 5.49238 5.58301 5.64470 5.70331 5.74828 5.75849 5.80028 5.93379 6.04493 6.05973 6.34479 6.47494 6.55132 6.93732 7.06101 7.53459 7.55305 7.77904 8.30007 8.47031 9.18873 10.80761 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002193 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.638199 B =12767.110035 C =13123.855408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 H 0.093 0.907 4 C 0.140 3.860 5 H 0.114 0.886 6 N -0.731 5.731 7 C 0.534 3.466 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.282 1.282 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.141 4.141 20 C 0.085 3.915 21 N -0.618 5.618 22 C 0.606 3.394 23 O -0.525 6.525 24 C -0.054 4.054 25 C -0.107 4.107 26 C -0.212 4.212 27 C 0.019 3.981 28 N -0.545 5.545 29 H 0.418 0.582 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 4.993 -24.573 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.111 0.889 4 C 0.034 3.966 5 H 0.131 0.869 6 N -0.388 5.388 7 C 0.321 3.679 8 O -0.387 6.387 9 C -0.305 4.305 10 S 0.169 5.831 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.208 1.208 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.181 4.181 20 C -0.038 4.038 21 N -0.353 5.353 22 C 0.396 3.604 23 O -0.401 6.401 24 C -0.167 4.167 25 C -0.133 4.133 26 C -0.236 4.236 27 C -0.117 4.117 28 N -0.147 5.147 29 H 0.262 0.738 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.757 6.143 -23.161 25.512 hybrid contribution -2.048 -1.843 -0.613 2.822 sum 6.709 4.301 -23.774 25.074 Atomic orbital electron populations 1.22087 0.93830 1.02377 1.03787 1.21953 0.95549 0.96520 0.83089 0.88890 1.21821 0.88047 0.91793 0.94976 0.86860 1.46196 1.31980 1.48403 1.12190 1.20346 0.85727 0.81039 0.80813 1.90710 1.36424 1.55478 1.56118 1.23540 1.00143 1.00145 1.06667 1.85388 1.40246 1.59218 0.98294 1.22818 1.14929 1.31345 0.99436 0.90988 1.24991 0.96880 0.96593 0.95079 1.70004 1.35222 1.42207 1.02810 0.86225 0.81340 0.80436 0.77513 1.20780 1.19906 1.19952 1.23225 0.98366 1.02653 0.93835 1.22616 0.94911 0.89453 0.96854 1.48660 1.52925 1.28628 1.05063 1.16713 0.80098 0.83643 0.79927 1.90842 1.38627 1.27931 1.82675 1.20358 1.09249 0.91523 0.95555 1.21336 1.01197 1.00256 0.90553 1.20930 1.06619 0.96488 0.99577 1.22128 1.04222 1.01433 0.83936 1.42889 1.43295 1.18941 1.09576 0.73809 0.90703 0.90639 0.92426 0.76362 0.89289 0.89161 0.92086 0.89241 0.88508 0.90741 0.90696 0.83491 0.83883 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.48 37.16 0.32 -1.26 16 2 C 0.13 1.24 3.46 -66.70 -0.23 1.01 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.14 1.40 3.13 -66.09 -0.21 1.19 16 5 H 0.11 1.28 7.62 -51.93 -0.40 0.88 16 6 N -0.73 -8.45 4.56 -52.03 -0.24 -8.69 16 7 C 0.53 8.94 7.85 -10.99 -0.09 8.85 16 8 O -0.51 -10.56 15.55 5.56 0.09 -10.47 16 9 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 10 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 11 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 12 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 15 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 19 C -0.14 -1.16 6.77 -24.58 -0.17 -1.32 16 20 C 0.09 0.58 5.44 -2.53 -0.01 0.57 16 21 N -0.62 -5.67 3.08 -164.20 -0.51 -6.17 16 22 C 0.61 6.90 7.63 -12.85 -0.10 6.80 16 23 O -0.52 -7.59 15.90 5.20 0.08 -7.51 16 24 C -0.05 -0.53 6.84 -81.98 -0.56 -1.09 16 25 C -0.11 -1.02 10.66 -39.12 -0.42 -1.44 16 26 C -0.21 -1.57 10.81 -39.98 -0.43 -2.01 16 27 C 0.02 0.12 11.89 -16.91 -0.20 -0.09 16 28 N -0.55 -3.77 5.38 -9.39 -0.05 -3.83 16 29 H 0.42 2.05 5.21 -40.82 -0.21 1.84 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.85 6.87 -51.93 -0.36 0.49 16 32 H 0.06 0.52 6.21 -51.93 -0.32 0.20 16 33 H 0.40 3.90 6.38 -40.82 -0.26 3.64 16 34 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.39 5.54 -51.93 -0.29 0.10 16 40 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.17 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -35.59 368.33 -8.86 -44.45 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.61 Total: 3.45 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.68 Total: -4.13 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.62 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.59 -8.86 -44.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756553838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.512 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds