Wall clock time and date at job start Tue Mar 31 2020 20:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.99816 * 2 1 4 4 C 1.54319 * 109.88003 * 121.09363 * 2 1 3 5 5 H 1.09004 * 110.72568 * 260.15022 * 4 2 1 6 6 N 1.46504 * 110.72381 * 23.24716 * 4 2 1 7 7 C 1.34773 * 120.00009 * 202.55839 * 6 4 2 8 8 O 1.21277 * 120.00238 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99592 * 179.97438 * 7 6 4 10 10 S 1.81011 * 109.46946 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00065 * 179.97438 * 10 9 7 12 12 H 1.08009 * 119.99698 * 0.02562 * 11 10 9 13 13 C 1.38794 * 120.00092 * 179.97438 * 11 10 9 14 14 N 1.31632 * 119.99780 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47259 * 179.97438 * 15 13 11 17 17 H 1.48509 * 109.46901 * 300.00074 * 15 13 11 18 18 H 1.48496 * 109.47145 * 59.99688 * 15 13 11 19 19 C 1.55163 * 103.10444 * 141.69868 * 4 2 1 20 20 C 1.54912 * 101.57699 * 324.41024 * 19 4 2 21 21 N 1.47423 * 104.83157 * 37.00598 * 20 19 4 22 22 C 1.34786 * 125.64384 * 155.92705 * 21 20 19 23 23 O 1.21685 * 119.99628 * 178.17074 * 22 21 20 24 24 C 1.46682 * 120.00118 * 358.17490 * 22 21 20 25 25 C 1.37867 * 126.23174 * 188.02600 * 24 22 21 26 26 C 1.39841 * 107.08463 * 179.97438 * 25 24 22 27 27 C 1.35452 * 107.86189 * 0.02562 * 26 25 24 28 28 N 1.35535 * 108.87370 * 359.73201 * 27 26 25 29 29 H 0.97003 * 125.67960 * 180.30535 * 28 27 26 30 30 H 1.09001 * 109.46697 * 298.90883 * 1 2 3 31 31 H 1.09002 * 109.46662 * 58.90376 * 1 2 3 32 32 H 1.08994 * 109.47070 * 178.90588 * 1 2 3 33 33 H 0.97000 * 119.99548 * 22.55967 * 6 4 2 34 34 H 1.09002 * 109.47534 * 60.00545 * 9 7 6 35 35 H 1.09004 * 109.47668 * 299.99747 * 9 7 6 36 36 H 0.97001 * 119.99444 * 180.02562 * 14 13 11 37 37 H 1.09001 * 111.00161 * 82.47890 * 19 4 2 38 38 H 1.08993 * 111.00497 * 206.29881 * 19 4 2 39 39 H 1.09001 * 110.36332 * 155.84937 * 20 19 4 40 40 H 1.08997 * 110.36514 * 278.05603 * 20 19 4 41 41 H 1.07996 * 126.46024 * 359.96416 * 25 24 22 42 42 H 1.07999 * 126.06858 * 179.97438 * 26 25 24 43 43 H 1.08003 * 125.56342 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3500 -0.0460 2.0213 6 7 1.0472 -1.6855 1.7475 7 6 1.0898 -2.0939 3.0312 8 8 1.9621 -1.6863 3.7685 9 6 0.0529 -3.0563 3.5505 10 16 0.3776 -3.4090 5.2959 11 6 -0.9444 -4.5238 5.6339 12 1 -1.6434 -4.7851 4.8530 13 6 -1.0868 -5.0671 6.9031 14 7 -0.2345 -4.7490 7.8545 15 14 -2.4879 -6.2495 7.2612 16 1 -2.4184 -6.6844 8.6794 17 1 -3.7848 -5.5695 7.0144 18 1 -2.3740 -7.4350 6.3743 19 6 3.2897 -1.5141 0.6970 20 6 2.8201 -1.8832 -0.7324 21 7 2.0353 -0.7198 -1.1839 22 6 1.8147 -0.3713 -2.4671 23 8 1.1209 0.5947 -2.7245 24 6 2.4110 -1.1564 -3.5532 25 6 2.4014 -0.8323 -4.8932 26 6 3.0795 -1.8527 -5.5675 27 6 3.4820 -2.7622 -4.6480 28 7 3.0868 -2.3481 -3.4195 29 1 3.2515 -2.8146 -2.5851 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0274 -0.0196 33 1 0.3493 -2.0112 1.1578 34 1 0.0978 -3.9827 2.9778 35 1 -0.9378 -2.6133 3.4479 36 1 -0.3339 -5.1290 8.7415 37 1 4.1668 -0.8677 0.6653 38 1 3.4874 -2.4089 1.2871 39 1 3.6789 -2.0382 -1.3856 40 1 2.1969 -2.7770 -0.7079 41 1 1.9544 0.0442 -5.3384 42 1 3.2511 -1.9064 -6.6324 43 1 4.0324 -3.6672 -4.8588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756553838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:34 Heat of formation + Delta-G solvation = -28.528101 kcal Electronic energy + Delta-G solvation = -26331.145493 eV Core-core repulsion = 22503.062985 eV Total energy + Delta-G solvation = -3828.082507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48106 -41.37257 -40.12955 -38.59541 -35.32315 -34.57888 -32.89809 -32.40014 -31.82271 -30.54753 -29.56906 -27.67612 -26.97631 -24.86522 -23.14803 -22.14579 -21.82480 -21.03144 -20.79741 -19.87959 -18.77855 -18.16957 -17.80864 -17.24697 -16.87399 -16.70485 -16.40534 -16.10197 -15.79936 -15.30302 -15.04074 -14.91351 -14.65862 -14.51609 -14.37062 -14.27170 -14.20910 -13.70889 -13.53886 -13.36665 -13.19225 -13.16289 -12.87772 -12.73442 -12.64075 -12.55026 -12.35638 -12.03532 -11.73465 -11.21505 -11.12795 -10.96611 -10.27181 -10.19492 -10.05169 -9.88825 -9.18758 -8.65111 -8.34475 -6.11683 0.43020 1.26384 1.43407 1.46230 1.55234 1.59392 1.66811 1.81698 2.19364 2.23158 2.28279 2.31998 2.99734 3.15646 3.31768 3.33984 3.65307 3.85227 3.93270 3.98130 4.08171 4.19994 4.27979 4.33362 4.34638 4.42579 4.50023 4.52285 4.54373 4.62423 4.83241 4.87714 4.94950 5.05377 5.14966 5.20106 5.29757 5.41995 5.42966 5.75041 5.93502 6.19749 6.27783 6.42747 6.50435 6.96572 7.07261 7.20361 8.74148 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002193 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.638199 B =12767.110035 C =13123.855408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.092 0.908 4 C 0.139 3.861 5 H 0.102 0.898 6 N -0.705 5.705 7 C 0.542 3.458 8 O -0.556 6.556 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.280 1.280 17 H -0.264 1.264 18 H -0.262 1.262 19 C -0.135 4.135 20 C 0.087 3.913 21 N -0.613 5.613 22 C 0.603 3.397 23 O -0.568 6.568 24 C -0.081 4.081 25 C -0.125 4.125 26 C -0.227 4.227 27 C 0.040 3.960 28 N -0.536 5.536 29 H 0.428 0.572 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.161 0.839 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.590 3.014 -26.595 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.110 0.890 4 C 0.033 3.967 5 H 0.120 0.880 6 N -0.361 5.361 7 C 0.328 3.672 8 O -0.434 6.434 9 C -0.283 4.283 10 S 0.082 5.918 11 C -0.695 4.695 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.205 1.205 17 H -0.188 1.188 18 H -0.186 1.186 19 C -0.174 4.174 20 C -0.036 4.036 21 N -0.347 5.347 22 C 0.394 3.606 23 O -0.448 6.448 24 C -0.193 4.193 25 C -0.152 4.152 26 C -0.250 4.250 27 C -0.097 4.097 28 N -0.138 5.138 29 H 0.274 0.726 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.252 0.748 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.178 0.822 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.713 4.152 -25.215 26.999 hybrid contribution -1.972 -1.176 -0.144 2.300 sum 6.742 2.976 -25.359 26.408 Atomic orbital electron populations 1.22030 0.93966 1.02616 1.03076 1.21860 0.95403 0.96484 0.82952 0.89016 1.21885 0.88446 0.91564 0.94757 0.88046 1.45885 1.32304 1.47431 1.10438 1.19942 0.84697 0.80630 0.81953 1.90707 1.37956 1.57092 1.57601 1.23386 1.01611 1.01961 1.01372 1.85531 1.41227 1.59741 1.05286 1.23170 1.15035 1.31276 1.00024 0.90023 1.26087 0.99689 0.98465 0.94833 1.70168 1.37412 1.43750 1.03308 0.85048 0.77712 0.78062 0.77462 1.20480 1.18842 1.18638 1.23174 0.97722 1.02266 0.94255 1.22764 0.95693 0.88887 0.96229 1.48627 1.52639 1.29046 1.04379 1.16966 0.79661 0.83294 0.80645 1.90812 1.40697 1.29866 1.83375 1.20140 1.11163 0.92991 0.95032 1.21518 1.01750 1.00809 0.91150 1.21224 1.06738 0.96220 1.00856 1.22792 1.02273 1.01748 0.82930 1.42863 1.42526 1.17950 1.10506 0.72646 0.90560 0.92251 0.91600 0.74850 0.87159 0.87550 0.92017 0.88058 0.89109 0.88568 0.89219 0.84545 0.82168 0.77190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.48 71.98 0.61 -2.34 16 2 C 0.14 2.43 3.46 45.25 0.16 2.59 16 3 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.14 2.60 3.13 46.18 0.14 2.75 16 5 H 0.10 2.25 7.62 -2.39 -0.02 2.23 16 6 N -0.70 -15.05 4.56 -436.91 -1.99 -17.05 16 7 C 0.54 17.61 7.85 87.66 0.69 18.30 16 8 O -0.56 -23.02 15.55 -3.02 -0.05 -23.06 16 9 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 10 S -0.14 -7.70 20.57 -56.49 -1.16 -8.86 16 11 C -0.55 -30.35 9.50 67.95 0.65 -29.71 16 12 H 0.08 4.20 7.80 -2.91 -0.02 4.17 16 13 C 0.01 0.79 5.49 84.86 0.47 1.26 16 14 N -0.91 -54.79 13.22 21.65 0.29 -54.51 16 15 Si 1.00 42.69 29.55 68.60 2.03 44.72 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 19 C -0.14 -1.93 6.77 31.99 0.22 -1.71 16 20 C 0.09 0.95 5.44 86.86 0.47 1.42 16 21 N -0.61 -10.39 3.08 -791.62 -2.44 -12.83 16 22 C 0.60 13.45 7.63 86.45 0.66 14.11 16 23 O -0.57 -16.92 15.90 -4.30 -0.07 -16.99 16 24 C -0.08 -1.49 6.84 40.35 0.28 -1.22 16 25 C -0.12 -2.33 10.66 22.57 0.24 -2.09 16 26 C -0.23 -2.86 10.81 22.01 0.24 -2.63 16 27 C 0.04 0.34 11.89 83.48 0.99 1.33 16 28 N -0.54 -5.83 5.38 -183.62 -0.99 -6.82 16 29 H 0.43 2.63 5.21 -92.71 -0.48 2.15 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.34 6.87 -2.39 -0.02 1.33 16 32 H 0.07 1.08 6.21 -2.39 -0.01 1.07 16 33 H 0.41 6.97 6.38 -92.71 -0.59 6.37 16 34 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 0.68 5.54 -2.39 -0.01 0.66 16 40 H 0.09 0.78 8.11 -2.39 -0.02 0.76 16 41 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.21 0.04 8.06 -2.91 -0.02 0.01 16 Total: -1.00 -80.54 368.33 1.84 -78.69 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.02 Total: 19.03 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.25 Total: -2.32 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -5.13 Total: -91.20 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.12 Total: -40.05 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.86 kcal Total: -80.54 1.84 -78.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756553838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.163 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds