Wall clock time and date at job start Tue Mar 31 2020 20:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.09007 * 110.71794 * 23.25039 * 4 2 1 6 6 N 1.46496 * 110.72315 * 259.97886 * 4 2 1 7 7 C 1.34769 * 120.00324 * 154.99740 * 6 4 2 8 8 O 1.21625 * 120.00035 * 0.02562 * 7 6 4 9 9 C 1.47264 * 120.00293 * 179.97438 * 7 6 4 10 10 C 1.46683 * 126.94435 * 180.02562 * 9 7 6 11 11 C 1.34488 * 106.33657 * 179.97438 * 10 9 7 12 12 N 1.36453 * 108.85112 * 359.97438 * 11 10 9 13 13 H 0.96996 * 124.84705 * 180.02562 * 12 11 10 14 14 C 1.34661 * 110.29780 * 359.75148 * 12 11 10 15 15 C 1.55160 * 102.94080 * 141.61069 * 4 2 1 16 16 C 1.54906 * 101.58189 * 324.50123 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34781 * 125.64824 * 61.60935 * 17 2 1 19 19 O 1.21274 * 119.99817 * 359.97438 * 18 17 2 20 20 C 1.50698 * 119.99533 * 179.97438 * 18 17 2 21 21 S 1.81008 * 109.46841 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99937 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00079 * 359.97438 * 22 21 20 24 24 C 1.38792 * 119.99814 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00380 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46769 * 60.00253 * 26 24 22 28 28 H 1.48504 * 109.46948 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47194 * 300.00117 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 33 33 H 0.97000 * 119.99470 * 334.99416 * 6 4 2 34 34 H 1.08007 * 126.83521 * 359.96481 * 10 9 7 35 35 H 1.07997 * 125.57443 * 180.02562 * 11 10 9 36 36 H 1.07999 * 125.79535 * 180.29419 * 14 12 11 37 37 H 1.09004 * 111.00105 * 206.42306 * 15 4 2 38 38 H 1.08994 * 111.03335 * 82.58852 * 15 4 2 39 39 H 1.08998 * 110.36713 * 278.16811 * 16 15 4 40 40 H 1.09001 * 110.36405 * 155.85087 * 16 15 4 41 41 H 1.09002 * 109.47163 * 299.98946 * 20 18 17 42 42 H 1.08998 * 109.47593 * 59.99780 * 20 18 17 43 43 H 0.96994 * 120.00451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4482 1.6162 6 7 2.4554 0.1929 2.2878 7 6 2.4581 -0.1932 3.5790 8 8 2.1284 -1.3257 3.8757 9 6 2.8613 0.7557 4.6305 10 6 2.9205 0.4996 6.0736 11 6 3.3392 1.6433 6.6439 12 7 3.5406 2.5749 5.6675 13 1 3.8444 3.4830 5.8220 14 6 3.2628 2.0517 4.4582 15 6 3.2877 -1.5151 0.6902 16 6 2.8146 -1.8783 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3585 -2.4663 19 8 1.1430 0.6244 -2.7171 20 6 2.3843 -1.1844 -3.5870 21 16 1.9120 -0.4582 -5.1764 22 6 2.6974 -1.5898 -6.2752 23 1 3.2597 -2.4234 -5.8809 24 6 2.5933 -1.4100 -7.6475 25 7 1.9084 -0.3939 -8.1281 26 14 3.4266 -2.6093 -8.8124 27 1 2.8863 -3.9741 -8.5875 28 1 3.1651 -2.1990 -10.2155 29 1 4.8900 -2.6084 -8.5604 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 2.6763 -0.4238 6.5779 35 1 3.4920 1.7987 7.7017 36 1 3.3414 2.5684 3.5131 37 1 3.4853 -2.4127 1.2763 38 1 4.1658 -0.8702 0.6592 39 1 2.1888 -2.7704 -0.7167 40 1 3.6718 -2.0318 -1.3950 41 1 3.4710 -1.2016 -3.5037 42 1 1.9989 -2.2021 -3.5241 43 1 1.8354 -0.2684 -9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756555604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:57 Heat of formation + Delta-G solvation = -21.157314 kcal Electronic energy + Delta-G solvation = -25821.746768 eV Core-core repulsion = 21993.983882 eV Total energy + Delta-G solvation = -3827.762886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51999 -40.35582 -39.02403 -37.22528 -34.33100 -32.42716 -31.86621 -31.47749 -30.80983 -29.53889 -28.40278 -25.74629 -25.48165 -23.28074 -22.84454 -21.32758 -20.90090 -20.09640 -19.20748 -18.75949 -17.66524 -17.00434 -16.64565 -16.05912 -15.60440 -15.18873 -14.89111 -14.79763 -14.42224 -14.29196 -14.03630 -13.95181 -13.88675 -13.70384 -13.23937 -12.89766 -12.83643 -12.57686 -12.48988 -12.46450 -12.10214 -11.78428 -11.63647 -11.35067 -11.03737 -11.03599 -10.90978 -10.76249 -10.15629 -9.82187 -9.42340 -9.31876 -9.15982 -9.05638 -8.81264 -8.53886 -8.23883 -6.50116 -6.21292 -3.92054 1.37476 2.06074 2.63912 2.80169 3.05639 3.12415 3.23945 3.27634 3.30356 3.31343 3.62570 4.19106 4.22386 4.41606 4.46234 4.61588 4.73197 4.86045 4.99618 5.01316 5.07667 5.11881 5.13798 5.27128 5.46148 5.52734 5.55924 5.61807 5.62592 5.65951 5.78016 5.87180 5.90588 5.94779 6.14493 6.22417 6.25640 6.32360 6.46572 6.50832 6.95212 7.30937 7.59539 7.66107 8.09984 8.35348 8.55376 9.23905 10.86052 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.001958 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.791056 B =14298.993873 C =14495.072890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.077 0.923 4 C 0.140 3.860 5 H 0.109 0.891 6 N -0.720 5.720 7 C 0.593 3.407 8 O -0.542 6.542 9 C -0.230 4.230 10 C -0.141 4.141 11 C -0.023 4.023 12 N -0.551 5.551 13 H 0.418 0.582 14 C 0.047 3.953 15 C -0.144 4.144 16 C 0.101 3.899 17 N -0.622 5.622 18 C 0.551 3.449 19 O -0.513 6.513 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.398 0.602 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 4.461 29.276 29.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.094 0.906 4 C 0.034 3.966 5 H 0.127 0.873 6 N -0.372 5.372 7 C 0.381 3.619 8 O -0.420 6.420 9 C -0.241 4.241 10 C -0.165 4.165 11 C -0.151 4.151 12 N -0.145 5.145 13 H 0.254 0.746 14 C -0.089 4.089 15 C -0.183 4.183 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.387 6.387 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.233 0.767 34 H 0.166 0.834 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.446 5.342 28.905 29.596 hybrid contribution 1.657 -1.060 -0.518 2.034 sum 5.104 4.283 28.387 29.158 Atomic orbital electron populations 1.22146 0.94093 1.02716 1.03138 1.21568 0.95172 0.96163 0.84173 0.90553 1.22023 0.97100 0.91167 0.86320 0.87279 1.45756 1.69694 1.15844 1.05871 1.17392 0.76491 0.86654 0.81321 1.90777 1.48497 1.20318 1.82384 1.20458 1.14964 0.94269 0.94369 1.21982 1.04523 0.98398 0.91597 1.21845 1.09145 0.89659 0.94403 1.41624 1.52885 1.13842 1.06163 0.74559 1.21976 1.02795 0.94515 0.89653 1.23216 0.98114 1.01626 0.95349 1.22301 0.95841 0.89153 0.94947 1.48528 1.54021 1.28807 1.04600 1.20013 0.79742 0.85002 0.81265 1.90691 1.38519 1.26947 1.82553 1.23518 1.03661 1.02729 0.99863 1.85376 1.69575 1.37798 0.90587 1.22821 1.38204 1.14253 0.93094 0.90966 1.24986 0.95241 0.95972 0.97344 1.70005 1.38439 1.28098 1.13764 0.86229 0.79643 0.80563 0.79097 1.19922 1.20815 1.19939 0.92240 0.91933 0.90452 0.76712 0.83404 0.81232 0.81062 0.89274 0.90186 0.90983 0.89895 0.89297 0.89222 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.10 37.16 0.34 -1.67 16 2 C 0.13 1.59 3.21 -66.95 -0.21 1.37 16 3 H 0.08 0.89 7.72 -51.93 -0.40 0.49 16 4 C 0.14 1.40 2.84 -66.10 -0.19 1.22 16 5 H 0.11 1.24 7.26 -51.93 -0.38 0.86 16 6 N -0.72 -6.28 5.17 -53.15 -0.27 -6.55 16 7 C 0.59 6.50 7.81 -12.60 -0.10 6.41 16 8 O -0.54 -8.02 16.62 5.26 0.09 -7.93 16 9 C -0.23 -2.05 6.29 -103.35 -0.65 -2.70 16 10 C -0.14 -1.17 10.97 -37.50 -0.41 -1.58 16 11 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16 12 N -0.55 -2.17 5.90 -12.85 -0.08 -2.24 16 13 H 0.42 0.27 8.96 -40.82 -0.37 -0.10 16 14 C 0.05 0.26 11.40 -16.84 -0.19 0.07 16 15 C -0.14 -1.36 6.77 -24.58 -0.17 -1.52 16 16 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 17 N -0.62 -8.80 3.07 -163.02 -0.50 -9.30 16 18 C 0.55 10.42 7.66 -10.98 -0.08 10.34 16 19 O -0.51 -11.51 14.90 5.56 0.08 -11.43 16 20 C -0.15 -3.00 5.16 36.00 0.19 -2.81 16 21 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 22 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 23 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 26 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.17 6.88 -51.93 -0.36 0.82 16 33 H 0.40 2.48 7.31 -40.82 -0.30 2.18 16 34 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.17 0.42 7.45 -52.49 -0.39 0.03 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 41 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -38.10 377.10 -8.91 -47.02 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.91 Total: 0.65 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.12 Total: -43.48 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.17 Total: -19.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.10 -8.91 -47.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756555604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.859 kcal (2) G-P(sol) polarization free energy of solvation -38.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds