Wall clock time and date at job start Tue Mar 31 2020 20:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.09007 * 110.71794 * 23.25039 * 4 2 1 6 6 N 1.46496 * 110.72315 * 259.97886 * 4 2 1 7 7 C 1.34769 * 120.00324 * 154.99740 * 6 4 2 8 8 O 1.21625 * 120.00035 * 0.02562 * 7 6 4 9 9 C 1.47264 * 120.00293 * 179.97438 * 7 6 4 10 10 C 1.46683 * 126.94435 * 180.02562 * 9 7 6 11 11 C 1.34488 * 106.33657 * 179.97438 * 10 9 7 12 12 N 1.36453 * 108.85112 * 359.97438 * 11 10 9 13 13 H 0.96996 * 124.84705 * 180.02562 * 12 11 10 14 14 C 1.34661 * 110.29780 * 359.75148 * 12 11 10 15 15 C 1.55160 * 102.94080 * 141.61069 * 4 2 1 16 16 C 1.54906 * 101.58189 * 324.50123 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34781 * 125.64824 * 61.60935 * 17 2 1 19 19 O 1.21274 * 119.99817 * 359.97438 * 18 17 2 20 20 C 1.50698 * 119.99533 * 179.97438 * 18 17 2 21 21 S 1.81008 * 109.46841 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99937 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00079 * 359.97438 * 22 21 20 24 24 C 1.38792 * 119.99814 * 179.97438 * 22 21 20 25 25 N 1.31632 * 120.00380 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99845 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46769 * 60.00253 * 26 24 22 28 28 H 1.48504 * 109.46948 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47194 * 300.00117 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 33 33 H 0.97000 * 119.99470 * 334.99416 * 6 4 2 34 34 H 1.08007 * 126.83521 * 359.96481 * 10 9 7 35 35 H 1.07997 * 125.57443 * 180.02562 * 11 10 9 36 36 H 1.07999 * 125.79535 * 180.29419 * 14 12 11 37 37 H 1.09004 * 111.00105 * 206.42306 * 15 4 2 38 38 H 1.08994 * 111.03335 * 82.58852 * 15 4 2 39 39 H 1.08998 * 110.36713 * 278.16811 * 16 15 4 40 40 H 1.09001 * 110.36405 * 155.85087 * 16 15 4 41 41 H 1.09002 * 109.47163 * 299.98946 * 20 18 17 42 42 H 1.08998 * 109.47593 * 59.99780 * 20 18 17 43 43 H 0.96994 * 120.00451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4482 1.6162 6 7 2.4554 0.1929 2.2878 7 6 2.4581 -0.1932 3.5790 8 8 2.1284 -1.3257 3.8757 9 6 2.8613 0.7557 4.6305 10 6 2.9205 0.4996 6.0736 11 6 3.3392 1.6433 6.6439 12 7 3.5406 2.5749 5.6675 13 1 3.8444 3.4830 5.8220 14 6 3.2628 2.0517 4.4582 15 6 3.2877 -1.5151 0.6902 16 6 2.8146 -1.8783 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3585 -2.4663 19 8 1.1430 0.6244 -2.7171 20 6 2.3843 -1.1844 -3.5870 21 16 1.9120 -0.4582 -5.1764 22 6 2.6974 -1.5898 -6.2752 23 1 3.2597 -2.4234 -5.8809 24 6 2.5933 -1.4100 -7.6475 25 7 1.9084 -0.3939 -8.1281 26 14 3.4266 -2.6093 -8.8124 27 1 2.8863 -3.9741 -8.5875 28 1 3.1651 -2.1990 -10.2155 29 1 4.8900 -2.6084 -8.5604 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 2.6763 -0.4238 6.5779 35 1 3.4920 1.7987 7.7017 36 1 3.3414 2.5684 3.5131 37 1 3.4853 -2.4127 1.2763 38 1 4.1658 -0.8702 0.6592 39 1 2.1888 -2.7704 -0.7167 40 1 3.6718 -2.0318 -1.3950 41 1 3.4710 -1.2016 -3.5037 42 1 1.9989 -2.2021 -3.5241 43 1 1.8354 -0.2684 -9.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756555604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:56 Heat of formation + Delta-G solvation = -48.847827 kcal Electronic energy + Delta-G solvation = -25822.947519 eV Core-core repulsion = 21993.983882 eV Total energy + Delta-G solvation = -3828.963637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02538 -41.40762 -40.04366 -38.44648 -35.30552 -34.57867 -32.91942 -32.27857 -31.60985 -30.32772 -29.59674 -27.64830 -26.64851 -24.05103 -23.91933 -22.11889 -21.45597 -20.94329 -20.20951 -19.51705 -19.41793 -18.18888 -17.60599 -17.05432 -16.87362 -16.73145 -16.36250 -15.92795 -15.71904 -15.24464 -14.98240 -14.86474 -14.64116 -14.52678 -14.45866 -14.07261 -13.92406 -13.76725 -13.61067 -13.23293 -13.15557 -13.06444 -12.91522 -12.85901 -12.68019 -12.58357 -12.26750 -11.84245 -11.72902 -11.12275 -11.05127 -10.88976 -10.28072 -10.15660 -9.75652 -9.70027 -9.27192 -8.66384 -8.33895 -6.12091 0.80123 1.22315 1.43671 1.44435 1.54178 1.57473 1.57837 1.91203 2.27564 2.32382 2.52425 2.59422 3.00111 3.18906 3.35991 3.53816 3.87895 3.92913 4.04140 4.12824 4.16220 4.19439 4.28000 4.29922 4.42530 4.46934 4.53530 4.58959 4.70294 4.74312 4.90468 4.98231 5.02812 5.09565 5.14738 5.19955 5.35883 5.42281 5.49913 5.76752 5.98439 6.20232 6.35700 6.60664 6.72380 7.07269 7.11984 7.34022 8.74984 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.001958 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.791056 B =14298.993873 C =14495.072890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.084 0.916 4 C 0.149 3.851 5 H 0.098 0.902 6 N -0.707 5.707 7 C 0.592 3.408 8 O -0.591 6.591 9 C -0.272 4.272 10 C -0.183 4.183 11 C -0.006 4.006 12 N -0.536 5.536 13 H 0.437 0.563 14 C 0.069 3.931 15 C -0.132 4.132 16 C 0.094 3.906 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.122 4.122 21 S -0.147 6.147 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.263 1.263 28 H -0.279 1.279 29 H -0.261 1.261 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.413 0.587 34 H 0.132 0.868 35 H 0.201 0.799 36 H 0.205 0.795 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 4.466 30.800 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 H 0.102 0.898 4 C 0.043 3.957 5 H 0.116 0.884 6 N -0.358 5.358 7 C 0.383 3.617 8 O -0.473 6.473 9 C -0.283 4.283 10 C -0.207 4.207 11 C -0.134 4.134 12 N -0.132 5.132 13 H 0.278 0.722 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.029 4.029 17 N -0.347 5.347 18 C 0.339 3.661 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.081 5.919 22 C -0.695 4.695 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.188 1.188 28 H -0.204 1.204 29 H -0.186 1.186 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.150 0.850 35 H 0.218 0.782 36 H 0.221 0.779 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.543 5.376 30.482 31.445 hybrid contribution 1.015 -1.011 -0.800 1.641 sum 6.557 4.365 29.682 30.709 Atomic orbital electron populations 1.22084 0.94512 1.02453 1.02575 1.21694 0.94847 0.96606 0.83863 0.89843 1.21795 0.97244 0.90989 0.85647 0.88392 1.45578 1.69011 1.16279 1.04979 1.17743 0.75610 0.86369 0.82009 1.90742 1.50982 1.22420 1.83107 1.20447 1.18098 0.95659 0.94057 1.22095 1.07142 0.99416 0.92059 1.22221 1.06737 0.88625 0.95816 1.41700 1.51492 1.14560 1.05450 0.72237 1.22372 1.00136 0.93238 0.91218 1.23163 0.97894 1.02028 0.94055 1.22594 0.96032 0.88245 0.95983 1.48406 1.53144 1.29510 1.03650 1.19690 0.79553 0.84369 0.82443 1.90679 1.40620 1.28760 1.83473 1.23327 1.04798 1.02875 0.96314 1.85537 1.70760 1.39995 0.95647 1.23166 1.38222 1.14404 0.93697 0.89947 1.26112 0.95756 0.97892 0.99303 1.70171 1.40050 1.30251 1.14225 0.85021 0.78820 0.77960 0.76305 1.18754 1.20387 1.18585 0.92343 0.89925 0.93519 0.75019 0.84958 0.78196 0.77871 0.88493 0.89141 0.89812 0.88893 0.87388 0.87733 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.10 71.98 0.66 -3.21 16 2 C 0.13 3.01 3.21 45.34 0.15 3.16 16 3 H 0.08 1.81 7.72 -2.39 -0.02 1.79 16 4 C 0.15 2.79 2.84 46.18 0.13 2.92 16 5 H 0.10 2.14 7.26 -2.38 -0.02 2.12 16 6 N -0.71 -11.16 5.17 -440.33 -2.27 -13.43 16 7 C 0.59 12.68 7.81 86.62 0.68 13.36 16 8 O -0.59 -17.86 16.62 -4.11 -0.07 -17.93 16 9 C -0.27 -4.56 6.29 -19.04 -0.12 -4.68 16 10 C -0.18 -2.99 10.97 23.62 0.26 -2.73 16 11 C -0.01 -0.05 11.89 83.12 0.99 0.94 16 12 N -0.54 -2.42 5.90 -194.56 -1.15 -3.57 16 13 H 0.44 -1.22 8.96 -92.71 -0.83 -2.05 16 14 C 0.07 0.55 11.40 83.91 0.96 1.51 16 15 C -0.13 -2.20 6.77 31.99 0.22 -1.98 16 16 C 0.09 1.85 6.69 86.85 0.58 2.43 16 17 N -0.61 -16.57 3.07 -788.07 -2.42 -18.98 16 18 C 0.55 20.76 7.66 87.66 0.67 21.43 16 19 O -0.56 -25.65 14.90 -3.01 -0.04 -25.70 16 20 C -0.12 -4.91 5.16 71.24 0.37 -4.54 16 21 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 22 C -0.55 -31.22 9.50 67.95 0.65 -30.58 16 23 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 24 C 0.01 0.81 5.49 84.86 0.47 1.28 16 25 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 26 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 29 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.45 6.88 -2.39 -0.02 1.43 16 33 H 0.41 4.08 7.31 -92.71 -0.68 3.41 16 34 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.20 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.20 0.15 7.45 -2.91 -0.02 0.13 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.70 7.48 -2.39 -0.02 1.68 16 41 H 0.11 3.91 7.85 -2.39 -0.02 3.89 16 42 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -87.16 377.10 1.38 -85.77 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.46 Total: 13.90 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.64 Total: -0.71 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -5.55 Total: -91.57 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.11 Total: -43.63 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -87.16 1.38 -85.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756555604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.925 kcal (2) G-P(sol) polarization free energy of solvation -87.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds