Wall clock time and date at job start Tue Mar 31 2020 20:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.99507 * 2 1 4 4 C 1.54316 * 109.88363 * 121.09439 * 2 1 3 5 5 H 1.09003 * 110.72351 * 215.58842 * 4 2 1 6 6 N 1.46500 * 110.72232 * 338.86695 * 4 2 1 7 7 C 1.34778 * 119.99959 * 199.97718 * 6 4 2 8 8 O 1.21626 * 119.99979 * 359.97438 * 7 6 4 9 9 C 1.47264 * 120.00009 * 179.97438 * 7 6 4 10 10 C 1.46691 * 126.93850 * 359.67975 * 9 7 6 11 11 C 1.34492 * 106.32831 * 179.89147 * 10 9 7 12 12 N 1.36445 * 108.85509 * 0.37556 * 11 10 9 13 13 H 0.97006 * 124.84646 * 179.72644 * 12 11 10 14 14 C 1.34662 * 110.30211 * 359.75338 * 12 11 10 15 15 C 1.55158 * 102.94139 * 97.22645 * 4 2 1 16 16 C 1.54917 * 101.57978 * 35.50252 * 15 4 2 17 17 N 1.47020 * 109.88277 * 238.90910 * 2 1 3 18 18 C 1.34776 * 125.65281 * 59.55634 * 17 2 1 19 19 O 1.21285 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00365 * 179.97438 * 18 17 2 21 21 S 1.80997 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.76203 * 100.00139 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99670 * 359.97438 * 22 21 20 24 24 C 1.38793 * 120.00206 * 179.97438 * 22 21 20 25 25 N 1.31629 * 119.99910 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99884 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47118 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46734 * 120.00195 * 26 24 22 29 29 H 1.48498 * 109.47200 * 239.99812 * 26 24 22 30 30 H 1.08996 * 109.47027 * 298.90261 * 1 2 3 31 31 H 1.08999 * 109.47118 * 58.90428 * 1 2 3 32 32 H 1.08995 * 109.46824 * 178.90147 * 1 2 3 33 33 H 0.96999 * 119.99851 * 19.96909 * 6 4 2 34 34 H 1.07995 * 126.83663 * 0.02562 * 10 9 7 35 35 H 1.08001 * 125.56905 * 180.09133 * 11 10 9 36 36 H 1.07998 * 125.80404 * 180.02562 * 14 12 11 37 37 H 1.08998 * 111.00511 * 277.42784 * 15 4 2 38 38 H 1.08996 * 111.04098 * 153.59117 * 15 4 2 39 39 H 1.08998 * 110.36726 * 81.82993 * 16 15 4 40 40 H 1.09005 * 110.36534 * 204.15515 * 16 15 4 41 41 H 1.09004 * 109.47135 * 299.99842 * 20 18 17 42 42 H 1.08993 * 109.47035 * 59.99497 * 20 18 17 43 43 H 0.97005 * 119.99836 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9657 -0.2831 1.6182 6 7 1.0293 -0.8027 2.2875 7 6 1.3822 -1.0379 3.5668 8 8 2.5520 -1.2065 3.8538 9 6 0.3514 -1.0909 4.6171 10 6 -1.0934 -0.9041 4.4446 11 6 -1.6406 -1.0400 5.6656 12 7 -0.6480 -1.2857 6.5689 13 1 -0.7845 -1.4178 7.5202 14 6 0.5482 -1.3180 5.9513 15 6 2.3520 -2.1694 0.6923 16 6 2.8569 -1.8496 -0.7369 17 7 2.0301 -0.7140 -1.1840 18 6 1.7754 -0.3844 -2.4657 19 8 1.0785 0.5756 -2.7180 20 6 2.3566 -1.2086 -3.5855 21 16 1.8364 -0.5182 -5.1757 22 6 2.6352 -1.6418 -6.2731 23 1 3.2281 -2.4533 -5.8777 24 6 2.5025 -1.4839 -7.6456 25 7 1.7802 -0.4946 -8.1275 26 14 3.3500 -2.6746 -8.8090 27 1 4.0954 -3.6896 -8.0220 28 1 2.3322 -3.3521 -9.6519 29 1 4.2956 -1.9291 -9.6781 30 1 -0.3633 0.4967 0.8996 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0274 -0.0197 33 1 0.0964 -0.6685 2.0585 34 1 -1.6141 -0.7005 3.5207 35 1 -2.6933 -0.9623 5.8944 36 1 1.5010 -1.4940 6.4284 37 1 1.4453 -2.7736 0.6603 38 1 3.1269 -2.6624 1.2793 39 1 3.9092 -1.5665 -0.7130 40 1 2.7089 -2.7079 -1.3924 41 1 3.4446 -1.1935 -3.5209 42 1 2.0020 -2.2359 -3.5023 43 1 1.6872 -0.3845 -9.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756555605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:59 Heat of formation + Delta-G solvation = -14.821598 kcal Electronic energy + Delta-G solvation = -25947.992972 eV Core-core repulsion = 22120.504823 eV Total energy + Delta-G solvation = -3827.488149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51450 -40.43306 -38.98992 -37.24666 -34.37565 -32.41878 -31.82042 -31.36890 -30.57532 -29.53207 -28.40173 -26.04748 -25.47662 -23.51706 -22.90057 -21.17120 -20.48887 -19.90743 -19.21656 -18.97471 -17.72522 -16.75250 -16.53270 -16.27143 -15.44729 -15.19318 -15.10346 -14.79344 -14.38522 -14.25763 -14.09634 -14.02118 -13.86738 -13.46524 -13.38346 -13.00226 -12.74834 -12.59093 -12.45170 -12.43546 -12.10897 -11.87706 -11.67590 -11.12927 -11.05736 -10.99930 -10.91201 -10.74035 -10.11535 -9.79291 -9.37155 -9.33744 -9.15855 -9.06303 -8.77768 -8.52079 -8.21625 -6.48803 -6.20759 -3.91070 1.44134 2.01485 2.62787 2.86285 3.07061 3.21062 3.22591 3.29907 3.32607 3.34170 3.64086 4.20193 4.24061 4.45833 4.49613 4.70914 4.78530 4.87036 4.98216 5.00990 5.08589 5.14589 5.15399 5.25965 5.39458 5.42485 5.51396 5.57522 5.65338 5.65932 5.76396 5.88612 5.92254 5.99170 6.15639 6.21237 6.26228 6.31347 6.46834 6.52133 6.96905 7.37891 7.61118 7.68432 8.13087 8.36675 8.57500 9.24827 10.86716 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032134 B = 0.001978 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.145891 B =14150.883602 C =14534.604108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 H 0.082 0.918 4 C 0.140 3.860 5 H 0.104 0.896 6 N -0.718 5.718 7 C 0.593 3.407 8 O -0.553 6.553 9 C -0.236 4.236 10 C -0.170 4.170 11 C -0.016 4.016 12 N -0.554 5.554 13 H 0.418 0.582 14 C 0.077 3.923 15 C -0.142 4.142 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.513 6.513 20 C -0.147 4.147 21 S -0.061 6.061 22 C -0.534 4.534 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.404 0.596 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 -3.408 30.766 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 H 0.100 0.900 4 C 0.035 3.965 5 H 0.122 0.878 6 N -0.372 5.372 7 C 0.382 3.618 8 O -0.432 6.432 9 C -0.246 4.246 10 C -0.195 4.195 11 C -0.144 4.144 12 N -0.149 5.149 13 H 0.255 0.745 14 C -0.060 4.060 15 C -0.181 4.181 16 C -0.023 4.023 17 N -0.359 5.359 18 C 0.340 3.660 19 O -0.387 6.387 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.682 4.682 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.195 0.805 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.325 -1.984 30.443 30.969 hybrid contribution 0.797 -1.925 -0.171 2.091 sum -4.528 -3.909 30.272 30.857 Atomic orbital electron populations 1.22172 0.94897 1.02655 1.03298 1.21538 0.95046 0.96363 0.84226 0.89982 1.21902 0.91964 0.96161 0.86518 0.87776 1.46001 1.11045 1.73512 1.06604 1.17388 0.87376 0.75372 0.81710 1.90774 1.19083 1.50800 1.82518 1.20359 0.93471 1.17365 0.93416 1.22094 0.92386 1.07349 0.97633 1.21818 0.94135 1.09172 0.89291 1.41675 1.06367 1.56199 1.10637 0.74503 1.21854 0.89694 1.01970 0.92501 1.23204 1.02667 0.96994 0.95245 1.22304 0.95212 0.89753 0.95012 1.48533 1.52049 1.30745 1.04586 1.20007 0.80023 0.84734 0.81245 1.90691 1.37394 1.28090 1.82534 1.23515 1.03842 1.02524 0.99873 1.85381 1.67045 1.40356 0.90605 1.22905 1.36340 1.15892 0.93089 0.90868 1.24992 0.95267 0.95983 0.97364 1.70030 1.37443 1.29277 1.13543 0.86119 0.79074 0.80210 0.80106 1.19599 1.20587 1.20564 0.91792 0.89752 0.92091 0.75674 0.83696 0.81301 0.80530 0.90221 0.89282 0.90942 0.89946 0.89237 0.89299 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 7.95 37.16 0.30 -1.65 16 2 C 0.13 1.62 3.48 -66.95 -0.23 1.38 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.14 1.47 3.10 -66.10 -0.21 1.26 16 5 H 0.10 1.17 7.70 -51.93 -0.40 0.77 16 6 N -0.72 -6.85 4.97 -53.15 -0.26 -7.11 16 7 C 0.59 6.60 7.81 -12.59 -0.10 6.51 16 8 O -0.55 -7.86 16.64 5.25 0.09 -7.78 16 9 C -0.24 -2.12 6.29 -103.35 -0.65 -2.77 16 10 C -0.17 -1.17 10.56 -37.49 -0.40 -1.57 16 11 C -0.02 -0.08 11.89 -16.82 -0.20 -0.28 16 12 N -0.55 -2.34 5.90 -12.85 -0.08 -2.41 16 13 H 0.42 0.35 8.96 -40.82 -0.37 -0.02 16 14 C 0.08 0.53 11.69 -16.84 -0.20 0.33 16 15 C -0.14 -1.40 6.77 -24.58 -0.17 -1.57 16 16 C 0.10 1.13 6.69 -2.53 -0.02 1.11 16 17 N -0.62 -8.94 3.08 -163.01 -0.50 -9.44 16 18 C 0.55 10.52 7.65 -10.99 -0.08 10.43 16 19 O -0.51 -11.57 14.77 5.55 0.08 -11.48 16 20 C -0.15 -3.02 5.16 36.01 0.19 -2.83 16 21 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 22 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 23 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 26 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.06 0.55 6.67 -51.93 -0.35 0.20 16 31 H 0.08 1.22 6.77 -51.93 -0.35 0.87 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.40 3.22 4.85 -40.82 -0.20 3.02 16 34 H 0.15 0.78 7.69 -52.49 -0.40 0.37 16 35 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.09 1.69 7.85 -51.92 -0.41 1.29 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -37.51 373.06 -8.90 -46.41 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.78 Total: 1.67 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.57 Total: -2.60 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.11 Total: -44.44 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.51 -8.90 -46.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756555605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.592 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds