Wall clock time and date at job start Tue Mar 31 2020 20:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99465 * 2 1 4 4 C 1.54319 * 109.88089 * 238.90354 * 2 1 3 5 5 H 1.08998 * 110.71875 * 144.41399 * 4 2 1 6 6 N 1.46504 * 110.72434 * 21.13602 * 4 2 1 7 7 C 1.34771 * 119.99816 * 154.99858 * 6 4 2 8 8 O 1.21624 * 120.00325 * 0.02562 * 7 6 4 9 9 C 1.47272 * 119.99713 * 180.02562 * 7 6 4 10 10 C 1.46683 * 126.94104 * 359.68999 * 9 7 6 11 11 C 1.34488 * 106.33316 * 179.83055 * 10 9 7 12 12 N 1.36448 * 108.85169 * 0.43123 * 11 10 9 13 13 H 0.97000 * 124.85063 * 179.72854 * 12 11 10 14 14 C 1.34657 * 110.29982 * 359.71190 * 12 11 10 15 15 C 1.55165 * 102.94251 * 262.77311 * 4 2 1 16 16 C 1.55123 * 101.48377 * 324.33847 * 15 4 2 17 17 N 1.47017 * 109.87965 * 121.09367 * 2 1 3 18 18 C 1.34775 * 125.64996 * 300.43566 * 17 2 1 19 19 O 1.21284 * 120.00295 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99957 * 179.97438 * 18 17 2 21 21 S 1.80998 * 109.47052 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00013 * 180.02562 * 21 20 18 23 23 H 1.07991 * 119.99794 * 0.02562 * 22 21 20 24 24 C 1.38798 * 119.99771 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00311 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99653 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48508 * 109.47016 * 299.99635 * 26 24 22 29 29 H 1.48495 * 109.47483 * 59.99992 * 26 24 22 30 30 H 1.09002 * 109.47403 * 300.35767 * 1 2 3 31 31 H 1.09004 * 109.47199 * 60.36091 * 1 2 3 32 32 H 1.08998 * 109.47388 * 180.35927 * 1 2 3 33 33 H 0.96995 * 119.99866 * 335.00687 * 6 4 2 34 34 H 1.07998 * 126.83513 * 359.97438 * 10 9 7 35 35 H 1.07991 * 125.57171 * 180.14718 * 11 10 9 36 36 H 1.07999 * 125.80100 * 179.97438 * 14 12 11 37 37 H 1.09007 * 111.00098 * 82.56965 * 15 4 2 38 38 H 1.08998 * 111.00434 * 206.38660 * 15 4 2 39 39 H 1.09010 * 110.49713 * 278.45060 * 16 15 4 40 40 H 1.09004 * 110.34516 * 156.05804 * 16 15 4 41 41 H 1.09005 * 109.46512 * 60.00633 * 20 18 17 42 42 H 1.08991 * 109.47135 * 300.00153 * 20 18 17 43 43 H 0.97001 * 119.99662 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9656 -0.2832 -1.6182 6 7 1.0292 -0.8027 -2.2875 7 6 1.3896 -0.9367 -3.5792 8 8 2.5661 -1.0140 -3.8775 9 6 0.3586 -0.9896 -4.6296 10 6 -1.0945 -0.9173 -4.4430 11 6 -1.6380 -1.0007 -5.6703 12 7 -0.6365 -1.1276 -6.5883 13 1 -0.7693 -1.2097 -7.5457 14 6 0.5625 -1.1220 -5.9754 15 6 2.3519 -2.1695 -0.6923 16 6 2.8612 -1.8465 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.7753 -0.3843 2.4657 19 8 1.0786 0.5757 2.7180 20 6 2.3555 -1.2094 3.5855 21 16 1.8356 -0.5188 5.1757 22 6 2.6332 -1.6433 6.2730 23 1 3.2253 -2.4552 5.8776 24 6 2.5003 -1.4854 7.6456 25 7 1.7781 -0.4960 8.1275 26 14 3.3464 -2.6772 8.8089 27 1 3.0492 -2.2939 10.2125 28 1 2.8485 -4.0533 8.5562 29 1 4.8133 -2.6322 8.5830 30 1 -0.3634 0.5194 0.8868 31 1 -0.3634 0.5082 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 0.0909 -0.7414 -2.0496 34 1 -1.6227 -0.8149 -3.5066 35 1 -2.6946 -0.9763 -5.8924 36 1 1.5219 -1.2079 -6.4637 37 1 1.4451 -2.7737 -0.6602 38 1 3.1266 -2.6621 -1.2799 39 1 3.9124 -1.5588 0.7116 40 1 2.7177 -2.7048 1.3933 41 1 3.4436 -1.1952 3.5211 42 1 1.9999 -2.2363 3.5021 43 1 1.3390 0.1230 7.5234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756555606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:02 Heat of formation + Delta-G solvation = -20.666802 kcal Electronic energy + Delta-G solvation = -25975.279465 eV Core-core repulsion = 22147.537849 eV Total energy + Delta-G solvation = -3827.741616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54179 -40.49179 -39.05454 -37.32834 -34.42687 -32.52075 -31.87104 -31.41354 -30.64700 -29.56224 -28.52159 -26.08793 -24.84950 -23.55093 -22.96312 -21.20051 -20.52319 -19.97853 -19.24363 -19.05548 -18.22160 -16.93900 -16.58581 -16.31349 -15.58965 -15.32380 -15.18353 -14.44759 -14.40292 -14.21524 -14.17595 -13.95417 -13.83176 -13.50036 -13.45642 -13.07018 -12.82226 -12.58560 -12.48736 -12.34577 -12.22882 -12.00301 -11.87112 -11.69116 -11.17350 -10.96481 -10.91013 -10.16616 -10.15149 -9.56907 -9.45902 -9.39428 -9.19188 -9.00632 -8.80384 -8.60192 -8.21547 -6.66492 -6.61382 -3.99208 1.41279 1.99008 2.57409 2.78563 2.96389 3.17091 3.29081 3.35200 3.38767 3.49181 3.58980 4.17026 4.26687 4.39231 4.47074 4.68457 4.75223 4.82160 4.91772 4.97255 4.99850 5.08487 5.20075 5.23223 5.35248 5.39599 5.41768 5.50038 5.54780 5.62200 5.70008 5.77332 5.86685 5.91615 6.02721 6.14558 6.22851 6.27525 6.43643 6.45453 6.94584 7.33910 7.58922 7.92801 8.09285 8.46513 8.50879 9.27831 10.82514 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.001979 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.028548 B =14145.736062 C =14517.613279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 H 0.082 0.918 4 C 0.139 3.861 5 H 0.107 0.893 6 N -0.717 5.717 7 C 0.593 3.407 8 O -0.553 6.553 9 C -0.236 4.236 10 C -0.171 4.171 11 C -0.016 4.016 12 N -0.554 5.554 13 H 0.419 0.581 14 C 0.077 3.923 15 C -0.142 4.142 16 C 0.100 3.900 17 N -0.620 5.620 18 C 0.550 3.450 19 O -0.514 6.514 20 C -0.125 4.125 21 S -0.116 6.116 22 C -0.607 4.607 23 H 0.066 0.934 24 C 0.035 3.965 25 N -0.884 5.884 26 Si 1.084 2.916 27 H -0.278 1.278 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.404 0.596 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 -3.745 -31.502 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 H 0.100 0.900 4 C 0.034 3.966 5 H 0.125 0.875 6 N -0.371 5.371 7 C 0.382 3.618 8 O -0.432 6.432 9 C -0.247 4.247 10 C -0.195 4.195 11 C -0.144 4.144 12 N -0.149 5.149 13 H 0.255 0.745 14 C -0.060 4.060 15 C -0.181 4.181 16 C -0.024 4.024 17 N -0.358 5.358 18 C 0.338 3.662 19 O -0.388 6.388 20 C -0.276 4.276 21 S 0.111 5.889 22 C -0.755 4.755 23 H 0.084 0.916 24 C -0.175 4.175 25 N -0.518 5.518 26 Si 0.910 3.090 27 H -0.203 1.203 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.195 0.805 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.837 -2.678 -29.749 30.258 hybrid contribution 0.155 -1.012 -2.241 2.463 sum -4.681 -3.689 -31.990 32.540 Atomic orbital electron populations 1.22168 0.94841 1.02543 1.03460 1.21564 0.95094 0.96376 0.84183 0.89986 1.21915 0.92141 0.96097 0.86494 0.87471 1.45951 1.10417 1.75102 1.05594 1.17393 0.87489 0.75119 0.81796 1.90775 1.18628 1.51113 1.82655 1.20350 0.93208 1.18067 0.93034 1.22088 0.92247 1.07647 0.97484 1.21818 0.93921 1.09857 0.88790 1.41676 1.05891 1.57339 1.09951 0.74483 1.21855 0.89663 1.01945 0.92505 1.23246 1.02651 0.97014 0.95209 1.22364 0.95154 0.89742 0.95091 1.48498 1.51820 1.30938 1.04548 1.19976 0.80100 0.84744 0.81345 1.90692 1.37438 1.28079 1.82565 1.23300 1.03868 1.02326 0.98069 1.84802 1.68282 1.42001 0.93861 1.23694 1.39489 1.17235 0.95084 0.91616 1.26053 0.96192 0.99337 0.95947 1.70802 1.28070 1.14012 1.38907 0.83334 0.75577 0.74444 0.75668 1.20283 1.21143 1.21122 0.89849 0.91648 0.92151 0.75712 0.83709 0.81288 0.80516 0.90142 0.89274 0.90835 0.89936 0.88986 0.89037 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 7.93 37.16 0.29 -1.64 16 2 C 0.13 1.60 3.48 -66.96 -0.23 1.37 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.14 1.44 3.18 -66.09 -0.21 1.23 16 5 H 0.11 1.20 7.55 -51.93 -0.39 0.81 16 6 N -0.72 -6.74 4.89 -53.15 -0.26 -7.00 16 7 C 0.59 6.54 7.81 -12.59 -0.10 6.44 16 8 O -0.55 -7.82 16.56 5.26 0.09 -7.73 16 9 C -0.24 -2.10 6.29 -103.35 -0.65 -2.75 16 10 C -0.17 -1.16 10.56 -37.50 -0.40 -1.55 16 11 C -0.02 -0.08 11.89 -16.82 -0.20 -0.28 16 12 N -0.55 -2.29 5.90 -12.85 -0.08 -2.36 16 13 H 0.42 0.31 8.96 -40.82 -0.37 -0.05 16 14 C 0.08 0.52 11.69 -16.85 -0.20 0.33 16 15 C -0.14 -1.36 6.78 -24.46 -0.17 -1.53 16 16 C 0.10 1.10 6.70 -2.41 -0.02 1.09 16 17 N -0.62 -8.84 3.08 -162.88 -0.50 -9.34 16 18 C 0.55 10.44 7.65 -10.98 -0.08 10.36 16 19 O -0.51 -11.51 14.76 5.55 0.08 -11.43 16 20 C -0.12 -2.56 5.16 36.01 0.19 -2.38 16 21 S -0.12 -3.13 19.60 -107.50 -2.11 -5.24 16 22 C -0.61 -17.56 9.50 30.94 0.29 -17.27 16 23 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 24 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 25 N -0.88 -27.59 13.67 55.49 0.76 -26.83 16 26 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.08 1.21 6.74 -51.93 -0.35 0.86 16 31 H 0.06 0.56 6.82 -51.93 -0.35 0.21 16 32 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 33 H 0.40 3.16 4.99 -40.82 -0.20 2.96 16 34 H 0.15 0.76 7.70 -52.49 -0.40 0.36 16 35 H 0.17 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 41 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 42 H 0.09 1.76 7.85 -51.92 -0.41 1.35 16 43 H 0.28 8.85 7.12 -40.82 -0.29 8.56 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -38.21 371.65 -8.81 -47.02 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.74 Total: 3.03 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.57 Total: -5.65 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.08 Total: -45.53 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.17 Total: -19.16 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.21 -8.81 -47.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756555606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.351 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds