Wall clock time and date at job start Tue Mar 31 2020 20:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47314 * 2 1 4 4 C 1.53007 * 109.46929 * 240.00707 * 2 1 3 5 5 C 1.53000 * 109.46708 * 174.99951 * 4 2 1 6 6 N 1.46505 * 109.46736 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99654 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99693 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47069 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99867 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00314 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00065 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46726 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47004 * 119.99755 * 15 13 11 18 18 H 1.48497 * 109.47067 * 240.00194 * 15 13 11 19 19 N 1.46498 * 109.47607 * 120.00655 * 2 1 3 20 20 C 1.34776 * 119.99649 * 275.00492 * 19 2 1 21 21 O 1.21514 * 120.00572 * 359.97438 * 20 19 2 22 22 C 1.48169 * 119.99642 * 179.97438 * 20 19 2 23 23 C 1.39313 * 119.72181 * 180.02562 * 22 20 19 24 24 C 1.38589 * 119.05712 * 179.76487 * 23 22 20 25 25 C 1.38621 * 118.49157 * 0.47358 * 24 23 22 26 26 C 1.38563 * 119.34902 * 359.48085 * 25 24 23 27 27 N 1.31523 * 120.90497 * 0.30017 * 26 25 24 28 28 H 1.08999 * 109.47251 * 299.99459 * 1 2 3 29 29 H 1.09001 * 109.47460 * 59.99678 * 1 2 3 30 30 H 1.08994 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46793 * 294.99588 * 4 2 1 32 32 H 1.09000 * 109.47163 * 54.99726 * 4 2 1 33 33 H 1.09005 * 109.47474 * 299.99597 * 5 4 2 34 34 H 1.09000 * 109.47493 * 59.99977 * 5 4 2 35 35 H 0.96997 * 120.00228 * 0.02562 * 6 5 4 36 36 H 1.09005 * 109.46658 * 300.00109 * 9 7 6 37 37 H 1.09000 * 109.47262 * 59.99847 * 9 7 6 38 38 H 0.96999 * 119.99621 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00391 * 94.99508 * 19 2 1 40 40 H 1.07997 * 120.46989 * 359.97438 * 23 22 20 41 41 H 1.08007 * 120.75458 * 180.25504 * 24 23 22 42 42 H 1.08002 * 120.32911 * 179.75965 * 25 24 23 43 43 H 1.07997 * 119.54794 * 180.27857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 7 4.0531 -1.3041 -2.5098 7 6 5.3740 -1.3395 -2.7754 8 8 6.1582 -0.7989 -2.0247 9 6 5.8763 -2.0498 -4.0060 10 16 7.6802 -1.9222 -4.0821 11 6 7.9872 -2.8120 -5.5716 12 1 7.1635 -3.2347 -6.1278 13 6 9.2878 -2.9699 -6.0302 14 7 10.2916 -2.4544 -5.3526 15 14 9.6132 -3.9127 -7.6097 16 1 8.3255 -4.3871 -8.1772 17 1 10.2875 -3.0218 -8.5879 18 1 10.4852 -5.0790 -7.3193 19 7 2.0184 -0.6907 1.1960 20 6 2.1471 -0.0184 2.3571 21 8 1.8584 1.1606 2.4117 22 6 2.6405 -0.7172 3.5669 23 6 2.7708 -0.0169 4.7641 24 6 3.2290 -0.6852 5.8884 25 6 3.5506 -2.0287 5.7739 26 6 3.3956 -2.6623 4.5513 27 7 2.9542 -2.0051 3.5010 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7713 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8532 0.4372 -1.3574 34 1 3.9994 -1.0727 -0.4261 35 1 3.4258 -1.7355 -3.1108 36 1 5.5882 -3.1002 -3.9621 37 1 5.4414 -1.5905 -4.8936 38 1 11.2005 -2.5650 -5.6730 39 1 2.2491 -1.6318 1.1524 40 1 2.5151 1.0311 4.8162 41 1 3.3365 -0.1701 6.8316 42 1 3.9140 -2.5775 6.6301 43 1 3.6408 -3.7100 4.4596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758854557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:13 Heat of formation + Delta-G solvation = -47.624130 kcal Electronic energy + Delta-G solvation = -25079.647036 eV Core-core repulsion = 21250.736463 eV Total energy + Delta-G solvation = -3828.910573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98054 -39.57261 -39.03615 -36.81891 -34.45422 -33.21263 -32.42273 -32.14182 -31.28935 -30.00971 -28.11320 -25.49789 -25.27804 -23.93857 -23.39451 -21.73924 -20.88598 -20.28118 -18.54392 -17.81144 -17.24676 -16.55160 -16.20047 -16.16994 -15.95878 -15.44936 -15.28702 -15.19212 -14.80035 -14.33600 -14.07978 -14.04287 -13.87855 -13.69282 -13.59464 -13.17188 -12.85893 -12.57346 -12.43088 -12.32446 -12.15129 -11.62459 -11.51443 -11.24862 -11.06662 -11.01228 -10.74982 -10.60566 -10.41860 -9.93660 -9.80042 -9.67155 -9.43502 -9.32266 -9.07258 -8.86362 -8.21891 -6.49134 -6.21167 -3.91512 0.24421 0.77751 2.42218 2.74974 3.03916 3.12480 3.21871 3.28477 3.33124 3.49581 3.70265 3.74922 4.20863 4.36043 4.37949 4.49529 4.55581 4.57040 4.61700 4.77434 4.97267 5.08515 5.10739 5.14017 5.24439 5.27987 5.33864 5.39397 5.51330 5.61109 5.64789 5.66519 5.78164 5.86733 5.91300 5.96615 6.11616 6.14825 6.19628 6.62203 7.08724 7.39783 7.60428 7.72301 7.87857 8.36031 8.63802 9.24202 10.86329 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.001974 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.968816 B =14182.061447 C =15415.615190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.095 0.905 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.705 5.705 20 C 0.574 3.426 21 O -0.533 6.533 22 C 0.077 3.923 23 C -0.112 4.112 24 C -0.082 4.082 25 C -0.150 4.150 26 C 0.100 3.900 27 N -0.458 5.458 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.412 0.588 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.164 0.600 19.524 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.394 5.394 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.357 5.357 20 C 0.359 3.641 21 O -0.409 6.409 22 C -0.061 4.061 23 C -0.133 4.133 24 C -0.108 4.108 25 C -0.170 4.170 26 C -0.060 4.060 27 N -0.170 5.170 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.248 0.752 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.973 1.986 19.986 29.039 hybrid contribution -0.692 -1.556 -1.292 2.137 sum -21.665 0.431 18.694 28.619 Atomic orbital electron populations 1.22163 0.94602 1.02393 1.02863 1.20971 0.94299 0.97817 0.83048 0.88709 1.22124 0.95497 1.02049 0.98073 1.21269 0.92608 0.97994 0.88541 1.45988 1.07816 1.58589 1.27056 1.20318 0.81497 0.79748 0.86804 1.90709 1.54958 1.44312 1.49104 1.23529 1.06813 1.02546 0.97468 1.85422 0.92235 1.72665 1.33163 1.22910 0.95471 1.40016 1.09873 0.90872 1.25006 0.95068 0.95684 0.97918 1.70031 0.99341 1.42637 1.38272 0.86111 0.78392 0.79255 0.81693 1.19619 1.20571 1.20576 1.45947 1.65898 1.14870 1.08962 1.17867 0.77576 0.85962 0.82712 1.90791 1.50366 1.15002 1.84710 1.21156 0.99997 0.90720 0.94235 1.22152 0.96983 1.02039 0.92087 1.21664 0.95695 0.94522 0.98924 1.22425 0.99272 0.95655 0.99632 1.22845 0.94824 1.00421 0.87908 1.67545 1.09298 1.07848 1.32293 0.91896 0.91229 0.92246 0.90399 0.89281 0.91549 0.91530 0.76855 0.89236 0.89226 0.92245 0.75164 0.83388 0.83972 0.84080 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.14 -1.03 4.87 -26.73 -0.13 -1.16 16 5 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16 6 N -0.74 -9.72 5.56 -60.29 -0.33 -10.05 16 7 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 8 O -0.52 -12.06 15.86 5.56 0.09 -11.98 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 10 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 11 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 12 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 15 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 N -0.70 -6.64 4.52 -54.65 -0.25 -6.89 16 20 C 0.57 6.58 7.78 -12.18 -0.09 6.49 16 21 O -0.53 -7.38 15.99 5.35 0.09 -7.29 16 22 C 0.08 0.80 6.75 -83.01 -0.56 0.24 16 23 C -0.11 -0.96 9.63 -39.05 -0.38 -1.34 16 24 C -0.08 -0.50 10.17 -39.31 -0.40 -0.90 16 25 C -0.15 -0.84 10.11 -39.32 -0.40 -1.24 16 26 C 0.10 0.71 11.18 -17.56 -0.20 0.52 16 27 N -0.46 -4.42 9.54 -9.80 -0.09 -4.51 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 35 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 36 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.41 3.55 7.93 -40.82 -0.32 3.23 16 40 H 0.15 1.20 7.64 -52.49 -0.40 0.80 16 41 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 42 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -37.70 388.04 -8.88 -46.58 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.06 Total: 3.07 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.67 Total: -1.74 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.06 Total: -47.03 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.17 Total: -19.27 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.70 -8.88 -46.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758854557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.041 kcal (2) G-P(sol) polarization free energy of solvation -37.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds