Wall clock time and date at job start Tue Mar 31 2020 20:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47314 * 2 1 4 4 C 1.53007 * 109.46929 * 240.00707 * 2 1 3 5 5 C 1.53000 * 109.46708 * 174.99951 * 4 2 1 6 6 N 1.46505 * 109.46736 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99654 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99693 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47069 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99867 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00314 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00065 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46726 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47004 * 119.99755 * 15 13 11 18 18 H 1.48497 * 109.47067 * 240.00194 * 15 13 11 19 19 N 1.46498 * 109.47607 * 120.00655 * 2 1 3 20 20 C 1.34776 * 119.99649 * 275.00492 * 19 2 1 21 21 O 1.21514 * 120.00572 * 359.97438 * 20 19 2 22 22 C 1.48169 * 119.99642 * 179.97438 * 20 19 2 23 23 C 1.39313 * 119.72181 * 180.02562 * 22 20 19 24 24 C 1.38589 * 119.05712 * 179.76487 * 23 22 20 25 25 C 1.38621 * 118.49157 * 0.47358 * 24 23 22 26 26 C 1.38563 * 119.34902 * 359.48085 * 25 24 23 27 27 N 1.31523 * 120.90497 * 0.30017 * 26 25 24 28 28 H 1.08999 * 109.47251 * 299.99459 * 1 2 3 29 29 H 1.09001 * 109.47460 * 59.99678 * 1 2 3 30 30 H 1.08994 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46793 * 294.99588 * 4 2 1 32 32 H 1.09000 * 109.47163 * 54.99726 * 4 2 1 33 33 H 1.09005 * 109.47474 * 299.99597 * 5 4 2 34 34 H 1.09000 * 109.47493 * 59.99977 * 5 4 2 35 35 H 0.96997 * 120.00228 * 0.02562 * 6 5 4 36 36 H 1.09005 * 109.46658 * 300.00109 * 9 7 6 37 37 H 1.09000 * 109.47262 * 59.99847 * 9 7 6 38 38 H 0.96999 * 119.99621 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00391 * 94.99508 * 19 2 1 40 40 H 1.07997 * 120.46989 * 359.97438 * 23 22 20 41 41 H 1.08007 * 120.75458 * 180.25504 * 24 23 22 42 42 H 1.08002 * 120.32911 * 179.75965 * 25 24 23 43 43 H 1.07997 * 119.54794 * 180.27857 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 7 4.0531 -1.3041 -2.5098 7 6 5.3740 -1.3395 -2.7754 8 8 6.1582 -0.7989 -2.0247 9 6 5.8763 -2.0498 -4.0060 10 16 7.6802 -1.9222 -4.0821 11 6 7.9872 -2.8120 -5.5716 12 1 7.1635 -3.2347 -6.1278 13 6 9.2878 -2.9699 -6.0302 14 7 10.2916 -2.4544 -5.3526 15 14 9.6132 -3.9127 -7.6097 16 1 8.3255 -4.3871 -8.1772 17 1 10.2875 -3.0218 -8.5879 18 1 10.4852 -5.0790 -7.3193 19 7 2.0184 -0.6907 1.1960 20 6 2.1471 -0.0184 2.3571 21 8 1.8584 1.1606 2.4117 22 6 2.6405 -0.7172 3.5669 23 6 2.7708 -0.0169 4.7641 24 6 3.2290 -0.6852 5.8884 25 6 3.5506 -2.0287 5.7739 26 6 3.3956 -2.6623 4.5513 27 7 2.9542 -2.0051 3.5010 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7713 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8532 0.4372 -1.3574 34 1 3.9994 -1.0727 -0.4261 35 1 3.4258 -1.7355 -3.1108 36 1 5.5882 -3.1002 -3.9621 37 1 5.4414 -1.5905 -4.8936 38 1 11.2005 -2.5650 -5.6730 39 1 2.2491 -1.6318 1.1524 40 1 2.5151 1.0311 4.8162 41 1 3.3365 -0.1701 6.8316 42 1 3.9140 -2.5775 6.6301 43 1 3.6408 -3.7100 4.4596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758854557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:12 Heat of formation + Delta-G solvation = -76.047032 kcal Electronic energy + Delta-G solvation = -25080.879546 eV Core-core repulsion = 21250.736463 eV Total energy + Delta-G solvation = -3830.143083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66517 -40.67227 -40.10561 -37.72885 -35.64413 -34.58319 -33.84330 -32.86324 -32.11202 -31.18093 -29.22202 -27.65483 -25.95580 -24.53425 -24.25923 -22.48357 -21.83788 -21.49946 -19.86452 -19.20203 -17.96185 -17.76161 -17.30080 -17.05952 -16.87932 -16.81329 -16.55375 -16.26038 -15.91445 -15.77347 -15.23009 -14.89948 -14.88456 -14.59281 -14.44740 -14.40693 -14.10274 -13.59663 -13.55769 -13.15869 -13.02468 -12.92300 -12.91417 -12.64220 -12.45646 -12.41303 -11.96652 -11.70303 -11.41296 -11.15831 -10.98173 -10.96802 -10.57674 -10.35820 -10.26720 -10.16630 -10.03777 -8.67226 -8.34646 -6.12945 -0.37695 0.23852 1.27274 1.41932 1.47614 1.58733 1.60716 1.67605 2.03510 2.25018 2.28925 2.86035 2.99599 3.11806 3.31984 3.69789 3.77630 3.84188 3.96384 4.01972 4.04550 4.07583 4.09077 4.30831 4.39695 4.44323 4.50175 4.51486 4.59981 4.74485 4.79936 4.86497 4.98380 5.04958 5.10753 5.15470 5.29317 5.41317 5.42553 5.45676 5.62418 6.20364 6.33874 6.51966 6.76420 7.06675 7.08672 7.25485 8.74916 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.001974 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.968816 B =14182.061447 C =15415.615190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.709 5.709 7 C 0.530 3.470 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.543 4.543 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.001 2.999 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.274 1.274 19 N -0.698 5.698 20 C 0.566 3.434 21 O -0.569 6.569 22 C 0.047 3.953 23 C -0.126 4.126 24 C -0.081 4.081 25 C -0.137 4.137 26 C 0.086 3.914 27 N -0.478 5.478 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.420 0.580 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.416 0.584 40 H 0.143 0.857 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.109 -1.509 19.017 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.279 4.279 10 S 0.070 5.930 11 C -0.691 4.691 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.199 1.199 19 N -0.349 5.349 20 C 0.352 3.648 21 O -0.448 6.448 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.106 4.106 25 C -0.157 4.157 26 C -0.074 4.074 27 N -0.190 5.190 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.257 0.743 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.253 0.747 40 H 0.161 0.839 41 H 0.191 0.809 42 H 0.195 0.805 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -22.994 -0.151 19.454 30.120 hybrid contribution -0.165 -0.909 -1.001 1.362 sum -23.159 -1.060 18.452 29.630 Atomic orbital electron populations 1.22090 0.93049 1.03243 1.02797 1.21044 0.95411 0.96842 0.83071 0.90840 1.22048 0.91814 1.03688 0.98399 1.21347 0.95545 0.96449 0.87016 1.45681 1.06058 1.57195 1.27432 1.20151 0.82972 0.79299 0.85956 1.90700 1.56774 1.46748 1.50632 1.23366 1.00854 1.04468 0.99192 1.85644 0.99892 1.73378 1.34132 1.23237 0.96210 1.39906 1.09770 0.89740 1.26169 0.94712 0.96594 1.01906 1.70200 0.99934 1.44268 1.40497 0.84878 0.78829 0.77559 0.76501 1.17869 1.20019 1.19937 1.45981 1.65167 1.14972 1.08829 1.18211 0.77191 0.85731 0.83645 1.90751 1.52236 1.16423 1.85402 1.21097 1.02097 0.91491 0.94352 1.22288 0.97625 1.02081 0.92665 1.22059 0.94446 0.94970 0.99162 1.22849 0.97303 0.95434 1.00101 1.23417 0.94316 1.01564 0.88064 1.67494 1.10195 1.07590 1.33723 0.93857 0.89411 0.90860 0.88007 0.86789 0.93378 0.93152 0.74262 0.86935 0.87001 0.92025 0.74660 0.83927 0.80947 0.80480 0.79433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.48 71.98 0.68 -1.28 16 2 C 0.14 2.29 2.57 44.99 0.12 2.40 16 3 H 0.07 1.53 7.58 -2.39 -0.02 1.52 16 4 C -0.12 -1.51 4.87 30.60 0.15 -1.36 16 5 C 0.12 2.71 5.56 86.38 0.48 3.19 16 6 N -0.71 -17.23 5.56 -463.04 -2.57 -19.81 16 7 C 0.53 19.76 7.85 87.66 0.69 20.44 16 8 O -0.57 -27.38 15.86 -3.02 -0.05 -27.43 16 9 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 10 S -0.16 -8.84 20.57 -56.49 -1.16 -10.00 16 11 C -0.54 -31.05 9.50 67.96 0.65 -30.41 16 12 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 13 C 0.01 0.61 5.49 84.86 0.47 1.08 16 14 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 15 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 N -0.70 -13.46 4.52 -445.09 -2.01 -15.48 16 20 C 0.57 13.88 7.78 86.88 0.68 14.56 16 21 O -0.57 -17.06 15.99 -3.76 -0.06 -17.12 16 22 C 0.05 1.01 6.75 41.91 0.28 1.29 16 23 C -0.13 -2.23 9.63 22.61 0.22 -2.02 16 24 C -0.08 -0.88 10.17 22.45 0.23 -0.65 16 25 C -0.14 -1.22 10.11 22.44 0.23 -0.99 16 26 C 0.09 1.11 11.18 84.82 0.95 2.06 16 27 N -0.48 -9.23 9.54 -184.91 -1.76 -11.00 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.05 1.33 7.75 -2.39 -0.02 1.31 16 35 H 0.42 6.66 8.47 -92.71 -0.79 5.87 16 36 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.42 7.16 7.93 -92.71 -0.74 6.42 16 40 H 0.14 2.55 7.64 -2.91 -0.02 2.53 16 41 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -87.38 388.04 0.46 -86.91 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.48 Total: 20.71 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.25 Total: 3.74 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -6.06 Total: -102.43 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.11 Total: -44.55 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -87.38 0.46 -86.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758854557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.866 kcal (2) G-P(sol) polarization free energy of solvation -87.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds