Wall clock time and date at job start Tue Mar 31 2020 20:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.35995 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38558 * 120.07405 * 359.96402 * 4 3 2 6 6 C 1.38247 * 119.99917 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.14468 * 359.97438 * 6 5 4 8 8 C 1.38241 * 120.14765 * 0.02562 * 7 6 5 9 9 C 1.38563 * 119.99765 * 359.97368 * 8 7 6 10 10 O 1.35999 * 120.07024 * 180.02562 * 9 8 7 11 11 C 1.42897 * 116.99765 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.46980 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99990 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.45207 * 117.00061 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47113 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99896 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99941 * 180.02562 * 16 15 14 19 19 C 1.46493 * 120.00008 * 180.02562 * 18 16 15 20 20 C 1.50710 * 109.47175 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99653 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99795 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00309 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47276 * 59.99942 * 24 22 20 26 26 H 1.48504 * 109.47389 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47133 * 300.00201 * 24 22 20 28 28 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46921 * 299.99907 * 1 2 3 30 30 H 1.09001 * 109.47024 * 59.99715 * 1 2 3 31 31 H 1.09003 * 109.46921 * 240.00093 * 2 1 3 32 32 H 1.09001 * 109.47024 * 120.00285 * 2 1 3 33 33 H 1.07995 * 120.00001 * 0.03822 * 5 4 3 34 34 H 1.07998 * 119.92703 * 180.27362 * 6 5 4 35 35 H 1.08004 * 119.92416 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.99988 * 180.02562 * 8 7 6 37 37 H 1.08996 * 109.47596 * 299.99815 * 11 10 9 38 38 H 1.09004 * 109.47087 * 60.00573 * 11 10 9 39 39 H 1.08998 * 109.46998 * 300.00167 * 15 14 12 40 40 H 1.08997 * 109.47194 * 59.99904 * 15 14 12 41 41 H 0.97000 * 120.00152 * 359.97438 * 18 16 15 42 42 H 1.09002 * 109.47324 * 299.99493 * 19 18 16 43 43 H 1.08992 * 109.47692 * 59.99850 * 19 18 16 44 44 H 0.97002 * 119.99736 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 0.0005 5 6 4.2000 0.4275 0.0018 6 6 5.5703 0.6104 0.0029 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9868 0.0009 9 6 3.8881 2.8105 -0.0002 10 8 3.0625 3.8912 -0.0020 11 6 3.6804 5.1796 -0.0020 12 6 2.6165 6.2470 -0.0047 13 8 1.4488 5.9361 -0.0060 14 8 2.9659 7.5429 -0.0047 15 6 1.8883 8.5163 -0.0069 16 6 2.4680 9.9074 -0.0072 17 8 3.6708 10.0632 -0.0053 18 7 1.6498 10.9783 -0.0085 19 6 2.2132 12.3306 -0.0094 20 6 1.0948 13.3408 -0.0114 21 1 0.0672 13.0086 -0.0125 22 6 1.3836 14.6889 -0.0120 23 7 2.6350 15.0934 -0.0103 24 14 -0.0026 15.9410 -0.0153 25 1 -0.8412 15.7543 1.1960 26 1 0.5685 17.3119 -0.0148 27 1 -0.8372 15.7524 -1.2290 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7885 -0.5709 0.0018 34 1 6.2282 -0.2461 -0.0006 35 1 7.1715 2.0260 0.0035 36 1 5.6791 3.9832 -0.0001 37 1 4.2996 5.2857 0.8886 38 1 4.3019 5.2845 -0.8914 39 1 1.2757 8.3781 -0.8977 40 1 1.2729 8.3789 0.8822 41 1 0.6878 10.8537 -0.0096 42 1 2.8267 12.4692 0.8808 43 1 2.8277 12.4676 -0.8991 44 1 2.8382 16.0419 -0.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016763021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:42 Heat of formation + Delta-G solvation = -166.164141 kcal Electronic energy + Delta-G solvation = -27337.585775 eV Core-core repulsion = 23028.489299 eV Total energy + Delta-G solvation = -4309.096476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10324 -40.51861 -39.04610 -38.58249 -37.28982 -36.33410 -34.27984 -32.43743 -32.33902 -30.84956 -30.44480 -29.41404 -28.28511 -26.54227 -24.49900 -22.84517 -22.66251 -22.17305 -20.99006 -19.98072 -19.25233 -17.94789 -17.84973 -17.25430 -17.23073 -16.74968 -16.52019 -15.99836 -15.81936 -15.43862 -15.23944 -15.15524 -15.01384 -14.56041 -14.33514 -13.84329 -13.66540 -13.28010 -12.99503 -12.97416 -12.91748 -12.47112 -12.41298 -12.31907 -12.00737 -11.80850 -11.72689 -11.49403 -11.39872 -11.12810 -11.04721 -10.92385 -10.77298 -10.62457 -10.35954 -9.47311 -9.22754 -9.16915 -8.79575 -8.21057 -8.01855 -6.20804 -4.28468 0.86732 1.04428 1.77293 1.96832 2.81494 3.13279 3.13347 3.23722 3.28775 3.30270 3.33021 3.88774 4.30289 4.36352 4.41733 4.52543 4.52957 4.64086 4.65319 4.67440 4.70736 4.82039 4.95285 4.99940 5.08387 5.15098 5.16563 5.19287 5.29999 5.31994 5.42503 5.68208 5.77370 5.86556 6.09190 6.18376 6.24893 6.63295 7.18580 7.20004 7.27233 7.43547 7.53076 7.60826 7.90251 8.46708 8.68473 8.92908 9.37945 10.89209 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.001636 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.227186 B =17112.035471 C =18242.910236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.302 6.302 4 C 0.108 3.892 5 C -0.175 4.175 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.172 4.172 9 C 0.100 3.900 10 O -0.284 6.284 11 C 0.069 3.931 12 C 0.464 3.536 13 O -0.484 6.484 14 O -0.325 6.325 15 C 0.051 3.949 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.705 5.705 19 C 0.251 3.749 20 C -0.547 4.547 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.885 5.885 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -32.840 0.020 32.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.216 6.216 4 C 0.062 3.938 5 C -0.194 4.194 6 C -0.134 4.134 7 C -0.135 4.135 8 C -0.191 4.191 9 C 0.055 3.945 10 O -0.197 6.197 11 C -0.007 4.007 12 C 0.304 3.696 13 O -0.370 6.370 14 O -0.241 6.241 15 C -0.027 4.027 16 C 0.283 3.717 17 O -0.412 6.412 18 N -0.356 5.356 19 C 0.131 3.869 20 C -0.585 4.585 21 H 0.082 0.918 22 C -0.139 4.139 23 N -0.522 5.522 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.226 0.774 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.635 -32.424 0.022 32.530 hybrid contribution -1.010 0.568 -0.004 1.159 sum 1.626 -31.856 0.017 31.897 Atomic orbital electron populations 1.21769 0.92552 1.02720 1.03945 1.22807 0.96208 0.82013 1.01114 1.86247 1.17830 1.28880 1.88629 1.18213 0.83424 0.90905 1.01286 1.21082 0.94104 0.97363 1.06850 1.20894 0.94197 0.97464 1.00835 1.20892 0.99894 0.91787 1.00894 1.21187 0.90955 1.00903 1.06061 1.18229 0.88956 0.84786 1.02535 1.86178 1.32954 1.11353 1.89220 1.21862 0.92818 0.80296 1.05743 1.22859 0.89515 0.83336 0.73875 1.90730 1.19997 1.82727 1.43583 1.86492 1.39111 1.14818 1.83646 1.22932 0.88369 0.86438 1.04919 1.19846 0.87711 0.85317 0.78822 1.90712 1.14490 1.86339 1.49654 1.46363 1.09471 1.07411 1.72305 1.19185 0.94841 0.74799 0.98069 1.21173 0.92635 0.90989 1.53711 0.91785 1.24948 0.95990 0.98439 0.94569 1.69963 1.17551 1.16108 1.48546 0.86440 0.81568 0.79970 0.78731 1.20034 1.21034 1.20030 0.90405 0.91334 0.91339 0.92125 0.92122 0.84754 0.85486 0.85273 0.84278 0.87309 0.87319 0.88231 0.88221 0.77359 0.95199 0.95212 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.30 -3.43 9.92 -34.23 -0.34 -3.77 16 4 C 0.11 1.14 6.70 -39.12 -0.26 0.88 16 5 C -0.18 -1.37 9.04 -39.46 -0.36 -1.72 16 6 C -0.12 -0.79 10.04 -39.57 -0.40 -1.18 16 7 C -0.12 -0.82 10.04 -39.57 -0.40 -1.22 16 8 C -0.17 -1.43 9.04 -39.46 -0.36 -1.79 16 9 C 0.10 1.10 6.70 -39.12 -0.26 0.84 16 10 O -0.28 -3.61 9.45 -47.38 -0.45 -4.06 16 11 C 0.07 0.71 5.33 36.01 0.19 0.90 16 12 C 0.46 6.39 8.03 36.01 0.29 6.68 16 13 O -0.48 -8.00 16.25 -25.48 -0.41 -8.41 16 14 O -0.33 -4.96 9.76 -45.89 -0.45 -5.41 16 15 C 0.05 0.76 5.94 36.01 0.21 0.97 16 16 C 0.50 9.85 7.91 -10.99 -0.09 9.77 16 17 O -0.53 -12.82 16.50 -14.11 -0.23 -13.05 16 18 N -0.71 -14.40 5.55 -61.47 -0.34 -14.74 16 19 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 20 C -0.55 -14.57 9.28 -34.44 -0.32 -14.89 16 21 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.88 -25.68 13.29 55.43 0.74 -24.95 16 24 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 37 H 0.11 0.84 7.66 -51.93 -0.40 0.45 16 38 H 0.11 0.84 7.66 -51.93 -0.40 0.45 16 39 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 40 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 41 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -36.04 386.82 -7.89 -43.93 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.93 Total: 1.64 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.28 Total: 7.41 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.40 Total: -39.69 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.88 Total: -34.69 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.04 -7.89 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016763021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.232 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds