Wall clock time and date at job start Tue Mar 31 2020 19:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52991 * 109.47222 * 119.99697 * 2 1 3 5 5 N 1.46499 * 109.47125 * 180.02562 * 4 2 1 6 6 C 1.34783 * 119.99913 * 180.02562 * 5 4 2 7 7 O 1.21584 * 119.99975 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99858 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99947 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47156 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00301 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99996 * 179.97438 * 10 9 8 13 13 C 1.37091 * 119.99767 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00779 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00058 * 180.02562 * 13 12 10 16 16 N 1.31418 * 119.99655 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47161 * 59.99572 * 17 15 13 19 19 H 1.48504 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47330 * 299.99880 * 17 15 13 21 21 S 1.81395 * 109.47261 * 240.00040 * 2 1 3 22 22 C 1.76198 * 103.00270 * 67.33219 * 21 2 1 23 23 C 1.38980 * 120.07879 * 83.95831 * 22 21 2 24 24 C 1.38080 * 119.91842 * 179.97438 * 23 22 21 25 25 C 1.38304 * 120.08220 * 0.02562 * 24 23 22 26 26 C 1.38299 * 120.15680 * 0.23715 * 25 24 23 27 27 C 1.38080 * 120.08514 * 359.48557 * 26 25 24 28 28 H 1.09005 * 109.46875 * 181.38825 * 1 2 3 29 29 H 1.08996 * 109.47297 * 301.38645 * 1 2 3 30 30 H 1.08999 * 109.47378 * 61.39738 * 1 2 3 31 31 H 1.08999 * 109.47170 * 300.00507 * 4 2 1 32 32 H 1.09002 * 109.47213 * 60.00051 * 4 2 1 33 33 H 0.96997 * 120.00390 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00040 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47366 * 300.00156 * 9 8 6 36 36 H 1.09004 * 109.47396 * 60.00346 * 9 8 6 37 37 H 0.97001 * 119.99816 * 0.02562 * 12 10 9 38 38 H 0.96999 * 119.99626 * 180.02562 * 16 15 13 39 39 H 1.08005 * 120.03843 * 0.02562 * 23 22 21 40 40 H 1.08005 * 119.95545 * 180.02562 * 24 23 22 41 41 H 1.07994 * 119.91583 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.95322 * 179.72056 * 26 25 24 43 43 H 1.08000 * 120.04054 * 180.23269 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5050 -0.7206 1.2495 6 6 4.1789 -1.3045 2.2602 7 8 3.5710 -1.8313 3.1719 8 7 5.5267 -1.3045 2.2602 9 6 6.2592 -1.9396 3.3584 10 6 7.7408 -1.8011 3.1203 11 8 8.1452 -1.2287 2.1304 12 7 8.6167 -2.3135 4.0075 13 6 9.9645 -2.1879 3.7906 14 1 10.3246 -1.6782 2.9092 15 6 10.8675 -2.7166 4.7049 16 7 10.4295 -3.3364 5.7777 17 14 12.7040 -2.5449 4.4098 18 1 13.0623 -1.1053 4.3431 19 1 13.4466 -3.1882 5.5234 20 1 13.0633 -3.2042 3.1286 21 16 2.1347 -0.8551 -1.4811 22 6 1.6431 0.2197 -2.7879 23 6 2.4377 1.3068 -3.1319 24 6 2.0495 2.1466 -4.1569 25 6 0.8713 1.9074 -4.8405 26 6 0.0754 0.8298 -4.4973 27 6 0.4599 -0.0176 -3.4772 28 1 -0.3633 -1.0274 0.0249 29 1 -0.3634 0.5352 0.8772 30 1 -0.3634 0.4920 -0.9022 31 1 1.6766 -0.2073 2.1392 32 1 1.6767 -1.7488 1.2493 33 1 3.9900 -0.3000 0.5224 34 1 6.0117 -0.8838 1.5330 35 1 5.9958 -1.4554 4.2988 36 1 5.9960 -2.9963 3.4076 37 1 8.2933 -2.7716 4.7989 38 1 11.0599 -3.7051 6.4161 39 1 3.3582 1.4939 -2.5988 40 1 2.6668 2.9913 -4.4251 41 1 0.5701 2.5663 -5.6415 42 1 -0.8464 0.6487 -5.0304 43 1 -0.1603 -0.8611 -3.2123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345057607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:06 Heat of formation + Delta-G solvation = -46.841026 kcal Electronic energy + Delta-G solvation = -24955.051952 eV Core-core repulsion = 21126.175337 eV Total energy + Delta-G solvation = -3828.876615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.81872 -39.34379 -38.20267 -36.06938 -34.35724 -33.60944 -32.76135 -31.42783 -31.37079 -31.29854 -27.95201 -25.98812 -24.26955 -23.31356 -23.02071 -22.11426 -20.64063 -19.54636 -18.45091 -18.14383 -17.82357 -16.80035 -16.40742 -16.08068 -15.54777 -15.42780 -15.26673 -14.74029 -14.63035 -14.43605 -14.08195 -14.00844 -13.89450 -13.56713 -13.47478 -13.16594 -12.98220 -12.77695 -12.50306 -12.13736 -11.89285 -11.72506 -11.62337 -11.60206 -11.38758 -11.08039 -10.58052 -10.48598 -10.28892 -10.01970 -9.59609 -9.42078 -9.25818 -9.10295 -8.58784 -8.56390 -8.07079 -8.06428 -6.48332 -3.90240 0.47950 0.92180 1.39613 2.24168 2.83396 3.15966 3.23434 3.27551 3.29831 3.44441 3.78919 4.11228 4.27103 4.37033 4.42820 4.51766 4.62197 4.63024 4.81889 4.94447 4.97112 5.03087 5.20264 5.23294 5.27038 5.28903 5.46564 5.53346 5.59070 5.72378 5.88852 5.90007 5.95759 6.00290 6.04995 6.12133 6.41836 6.47971 6.80061 7.12831 7.48703 7.95432 8.27544 8.48760 8.83132 9.07713 9.42935 9.91096 10.68508 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.001860 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.967649 B =15047.083477 C =16213.741263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.094 0.906 4 C 0.162 3.838 5 N -0.748 5.748 6 C 0.706 3.294 7 O -0.599 6.599 8 N -0.723 5.723 9 C 0.129 3.871 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.934 3.066 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 S -0.133 6.133 22 C -0.119 4.119 23 C -0.074 4.074 24 C -0.128 4.128 25 C -0.097 4.097 26 C -0.130 4.130 27 C -0.071 4.071 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.663 9.403 -16.876 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.214 4.214 3 H 0.113 0.887 4 C 0.036 3.964 5 N -0.406 5.406 6 C 0.406 3.594 7 O -0.478 6.478 8 N -0.381 5.381 9 C 0.000 4.000 10 C 0.215 3.785 11 O -0.484 6.484 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.122 0.878 15 C -0.178 4.178 16 N -0.535 5.535 17 Si 0.761 3.239 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 S 0.100 5.900 22 C -0.230 4.230 23 C -0.094 4.094 24 C -0.148 4.148 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.091 4.091 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.236 0.764 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.230 8.173 -16.503 28.867 hybrid contribution 0.557 1.380 -0.351 1.530 sum -21.672 9.553 -16.854 29.069 Atomic orbital electron populations 1.22010 0.91929 1.03620 1.02706 1.23678 0.99988 1.02480 0.95226 0.88722 1.20904 0.79491 1.01087 0.94909 1.45072 1.06411 1.63059 1.26047 1.15810 0.81780 0.79450 0.82400 1.90902 1.68135 1.51426 1.37377 1.44753 1.04033 1.61669 1.27617 1.20779 0.90718 0.98694 0.89773 1.19777 0.87076 0.85655 0.86031 1.90490 1.79304 1.48292 1.30330 1.41777 1.06170 1.48962 1.21524 1.19675 0.80426 1.34957 1.08383 0.87757 1.25324 1.00960 0.96289 0.95177 1.69612 1.36191 1.36587 1.11114 0.85871 0.81452 0.78704 0.77913 1.19823 1.20881 1.19798 1.85956 1.75949 1.31224 0.96830 1.21769 0.98714 1.00393 1.02173 1.21673 0.98609 0.92905 0.96228 1.21253 0.97188 0.99935 0.96397 1.21357 0.94371 0.97062 0.98750 1.21236 1.00291 0.95508 0.97966 1.21600 0.94624 0.98349 0.94559 0.90884 0.91274 0.91965 0.90018 0.90633 0.76448 0.75553 0.90044 0.90011 0.77013 0.91575 0.85017 0.85442 0.85689 0.85535 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.12 37.16 0.34 -0.58 16 2 C -0.09 -0.68 2.88 -26.73 -0.08 -0.76 16 3 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 4 C 0.16 1.67 5.12 -4.05 -0.02 1.65 16 5 N -0.75 -9.26 5.27 -65.23 -0.34 -9.60 16 6 C 0.71 11.72 8.57 -86.91 -0.74 10.97 16 7 O -0.60 -11.87 16.34 5.29 0.09 -11.78 16 8 N -0.72 -12.49 5.53 -66.41 -0.37 -12.86 16 9 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 10 C 0.43 9.98 7.85 -10.98 -0.09 9.89 16 11 O -0.60 -15.44 15.24 5.55 0.08 -15.35 16 12 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 13 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 15 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 16 N -0.89 -24.05 13.05 55.50 0.72 -23.32 16 17 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 S -0.13 -1.25 20.29 -107.50 -2.18 -3.43 16 22 C -0.12 -1.02 5.22 -39.03 -0.20 -1.22 16 23 C -0.07 -0.59 9.79 -39.36 -0.39 -0.97 16 24 C -0.13 -0.86 10.04 -39.61 -0.40 -1.25 16 25 C -0.10 -0.59 10.04 -39.53 -0.40 -0.98 16 26 C -0.13 -0.81 10.04 -39.62 -0.40 -1.21 16 27 C -0.07 -0.53 9.21 -39.37 -0.36 -0.89 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 7.14 -51.93 -0.37 0.02 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.40 4.31 7.99 -40.82 -0.33 3.98 16 34 H 0.41 6.86 7.45 -40.82 -0.30 6.55 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -32.70 384.34 -10.20 -42.91 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -5.91 Total: 16.68 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -3.01 Total: 9.13 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.04 Total: -59.61 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: 0.17 Total: -27.13 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.18 Total: -3.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.70 -10.20 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345057607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.936 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds