Wall clock time and date at job start Tue Mar 31 2020 19:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52991 * 109.47222 * 119.99697 * 2 1 3 5 5 N 1.46499 * 109.47125 * 180.02562 * 4 2 1 6 6 C 1.34783 * 119.99913 * 180.02562 * 5 4 2 7 7 O 1.21584 * 119.99975 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99858 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99947 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47156 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00301 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99996 * 179.97438 * 10 9 8 13 13 C 1.37091 * 119.99767 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00779 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00058 * 180.02562 * 13 12 10 16 16 N 1.31418 * 119.99655 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47161 * 59.99572 * 17 15 13 19 19 H 1.48504 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47330 * 299.99880 * 17 15 13 21 21 S 1.81395 * 109.47261 * 240.00040 * 2 1 3 22 22 C 1.76198 * 103.00270 * 67.33219 * 21 2 1 23 23 C 1.38980 * 120.07879 * 83.95831 * 22 21 2 24 24 C 1.38080 * 119.91842 * 179.97438 * 23 22 21 25 25 C 1.38304 * 120.08220 * 0.02562 * 24 23 22 26 26 C 1.38299 * 120.15680 * 0.23715 * 25 24 23 27 27 C 1.38080 * 120.08514 * 359.48557 * 26 25 24 28 28 H 1.09005 * 109.46875 * 181.38825 * 1 2 3 29 29 H 1.08996 * 109.47297 * 301.38645 * 1 2 3 30 30 H 1.08999 * 109.47378 * 61.39738 * 1 2 3 31 31 H 1.08999 * 109.47170 * 300.00507 * 4 2 1 32 32 H 1.09002 * 109.47213 * 60.00051 * 4 2 1 33 33 H 0.96997 * 120.00390 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00040 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47366 * 300.00156 * 9 8 6 36 36 H 1.09004 * 109.47396 * 60.00346 * 9 8 6 37 37 H 0.97001 * 119.99816 * 0.02562 * 12 10 9 38 38 H 0.96999 * 119.99626 * 180.02562 * 16 15 13 39 39 H 1.08005 * 120.03843 * 0.02562 * 23 22 21 40 40 H 1.08005 * 119.95545 * 180.02562 * 24 23 22 41 41 H 1.07994 * 119.91583 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.95322 * 179.72056 * 26 25 24 43 43 H 1.08000 * 120.04054 * 180.23269 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5050 -0.7206 1.2495 6 6 4.1789 -1.3045 2.2602 7 8 3.5710 -1.8313 3.1719 8 7 5.5267 -1.3045 2.2602 9 6 6.2592 -1.9396 3.3584 10 6 7.7408 -1.8011 3.1203 11 8 8.1452 -1.2287 2.1304 12 7 8.6167 -2.3135 4.0075 13 6 9.9645 -2.1879 3.7906 14 1 10.3246 -1.6782 2.9092 15 6 10.8675 -2.7166 4.7049 16 7 10.4295 -3.3364 5.7777 17 14 12.7040 -2.5449 4.4098 18 1 13.0623 -1.1053 4.3431 19 1 13.4466 -3.1882 5.5234 20 1 13.0633 -3.2042 3.1286 21 16 2.1347 -0.8551 -1.4811 22 6 1.6431 0.2197 -2.7879 23 6 2.4377 1.3068 -3.1319 24 6 2.0495 2.1466 -4.1569 25 6 0.8713 1.9074 -4.8405 26 6 0.0754 0.8298 -4.4973 27 6 0.4599 -0.0176 -3.4772 28 1 -0.3633 -1.0274 0.0249 29 1 -0.3634 0.5352 0.8772 30 1 -0.3634 0.4920 -0.9022 31 1 1.6766 -0.2073 2.1392 32 1 1.6767 -1.7488 1.2493 33 1 3.9900 -0.3000 0.5224 34 1 6.0117 -0.8838 1.5330 35 1 5.9958 -1.4554 4.2988 36 1 5.9960 -2.9963 3.4076 37 1 8.2933 -2.7716 4.7989 38 1 11.0599 -3.7051 6.4161 39 1 3.3582 1.4939 -2.5988 40 1 2.6668 2.9913 -4.4251 41 1 0.5701 2.5663 -5.6415 42 1 -0.8464 0.6487 -5.0304 43 1 -0.1603 -0.8611 -3.2123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345057607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:06 Heat of formation + Delta-G solvation = -68.611315 kcal Electronic energy + Delta-G solvation = -24955.995983 eV Core-core repulsion = 21126.175337 eV Total energy + Delta-G solvation = -3829.820646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20390 -40.02460 -39.84033 -37.06320 -36.19421 -35.25004 -33.70420 -33.32251 -31.92430 -31.86546 -29.42264 -27.20216 -25.97375 -23.86403 -23.52658 -22.82027 -21.95854 -21.34928 -20.10142 -19.55433 -18.69511 -17.63103 -17.49515 -17.37454 -16.85506 -16.50508 -16.48019 -16.01631 -15.92435 -15.62017 -15.52629 -15.14607 -15.00120 -14.38629 -14.29636 -13.95537 -13.91323 -13.79869 -13.56727 -13.52402 -13.32652 -13.09383 -12.88476 -12.45661 -12.38735 -12.12840 -12.10153 -11.98132 -11.55001 -11.44885 -11.19793 -10.54174 -10.44373 -10.09073 -9.93043 -9.86858 -9.71794 -8.79691 -8.49466 -5.99668 -0.07116 0.41361 0.76043 1.39135 1.43076 1.53163 1.59848 1.62654 1.91372 2.12373 2.29781 2.78140 3.05264 3.17621 3.32400 3.53489 3.88169 3.94682 4.06743 4.16616 4.20979 4.22843 4.44600 4.47520 4.50783 4.53442 4.55317 4.67023 4.74535 4.78593 4.90825 5.06372 5.19200 5.31880 5.37677 5.39510 5.41489 5.42897 5.51882 5.90834 5.94446 5.94912 6.49718 7.00833 7.04753 7.43732 7.52797 7.96156 8.67142 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.001860 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.967649 B =15047.083477 C =16213.741263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 H 0.101 0.899 4 C 0.161 3.839 5 N -0.732 5.732 6 C 0.706 3.294 7 O -0.631 6.631 8 N -0.724 5.724 9 C 0.142 3.858 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.559 5.559 13 C -0.338 4.338 14 H 0.086 0.914 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.998 3.002 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 S -0.171 6.171 22 C -0.129 4.129 23 C -0.090 4.090 24 C -0.134 4.134 25 C -0.098 4.098 26 C -0.132 4.132 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.410 0.590 34 H 0.410 0.590 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.499 10.363 -17.892 31.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.197 4.197 3 H 0.120 0.880 4 C 0.036 3.964 5 N -0.389 5.389 6 C 0.406 3.594 7 O -0.513 6.513 8 N -0.382 5.382 9 C 0.013 3.987 10 C 0.220 3.780 11 O -0.512 6.512 12 N -0.194 5.194 13 C -0.467 4.467 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.555 5.555 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.195 1.195 21 S 0.062 5.938 22 C -0.240 4.240 23 C -0.111 4.111 24 C -0.153 4.153 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.102 4.102 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.247 0.753 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.098 9.147 -17.543 30.413 hybrid contribution 0.727 1.119 -0.118 1.339 sum -22.372 10.266 -17.661 30.295 Atomic orbital electron populations 1.21981 0.90501 1.03886 1.03428 1.23583 1.00931 1.02016 0.93213 0.88030 1.21035 0.77964 1.01027 0.96390 1.45021 1.07301 1.61642 1.24964 1.15895 0.81334 0.79413 0.82784 1.90880 1.68576 1.52958 1.38863 1.44685 1.04393 1.61822 1.27273 1.20585 0.87647 0.99598 0.90821 1.20421 0.88598 0.84001 0.84933 1.90467 1.80350 1.49083 1.31297 1.41822 1.05908 1.49628 1.22082 1.19703 0.81850 1.36500 1.08661 0.89572 1.26139 1.05015 0.95409 0.94625 1.69681 1.37690 1.36646 1.11528 0.84920 0.76174 0.78755 0.78080 1.19484 1.19630 1.19536 1.86025 1.76619 1.32576 0.98565 1.21747 0.99563 1.00566 1.02149 1.21785 0.98838 0.93354 0.97114 1.21515 0.97751 1.00125 0.95925 1.21707 0.93835 0.97159 0.98939 1.21542 1.01072 0.95056 0.97438 1.21744 0.94450 0.98955 0.95017 0.90921 0.90034 0.91613 0.89535 0.91576 0.75379 0.75276 0.88928 0.89126 0.76684 0.91087 0.85123 0.83806 0.83242 0.83311 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.12 71.98 0.66 -0.94 16 2 C -0.07 -1.04 2.88 30.59 0.09 -0.95 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.16 3.20 5.12 86.38 0.44 3.64 16 5 N -0.73 -17.69 5.27 -478.54 -2.52 -20.21 16 6 C 0.71 23.08 8.57 179.05 1.53 24.61 16 7 O -0.63 -24.72 16.34 -3.98 -0.07 -24.78 16 8 N -0.72 -24.74 5.53 -482.29 -2.67 -27.41 16 9 C 0.14 5.36 6.15 85.64 0.53 5.88 16 10 C 0.43 20.32 7.85 87.66 0.69 21.00 16 11 O -0.62 -32.60 15.24 -3.07 -0.05 -32.65 16 12 N -0.56 -28.39 5.29 -306.98 -1.62 -30.01 16 13 C -0.34 -18.76 9.68 84.04 0.81 -17.94 16 14 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 16 N -0.92 -48.96 13.05 21.67 0.28 -48.67 16 17 Si 1.00 42.02 29.55 68.60 2.03 44.05 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 S -0.17 -3.18 20.29 -56.49 -1.15 -4.33 16 22 C -0.13 -2.13 5.22 22.62 0.12 -2.02 16 23 C -0.09 -1.38 9.79 22.41 0.22 -1.16 16 24 C -0.13 -1.58 10.04 22.25 0.22 -1.35 16 25 C -0.10 -0.96 10.04 22.30 0.22 -0.74 16 26 C -0.13 -1.37 10.04 22.25 0.22 -1.15 16 27 C -0.08 -1.12 9.21 22.41 0.21 -0.91 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.74 7.14 -2.39 -0.02 0.72 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.41 8.58 7.99 -92.71 -0.74 7.84 16 34 H 0.41 13.71 7.45 -92.71 -0.69 13.02 16 35 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 38 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -69.56 384.34 -0.43 -70.00 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -1.10 Total: 46.14 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 6.43 Total: 27.87 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -6.53 Total: -126.30 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -0.11 Total: -57.43 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.15 Total: -4.33 kcal Total: -69.56 -0.43 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345057607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.388 kcal (2) G-P(sol) polarization free energy of solvation -69.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds