Wall clock time and date at job start Tue Mar 31 2020 20:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46720 * 2 1 4 4 C 1.34636 * 116.99629 * 180.02562 * 3 2 1 5 5 O 1.21510 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99797 * 180.02562 * 4 3 2 7 7 C 1.47026 * 125.65100 * 0.02718 * 6 4 3 8 8 H 1.09004 * 109.87531 * 300.21113 * 7 6 4 9 9 C 1.50702 * 109.88038 * 61.37441 * 7 6 4 10 10 O 1.21204 * 120.00067 * 359.97438 * 9 7 6 11 11 O 1.34311 * 119.99755 * 180.02562 * 9 7 6 12 12 C 1.34920 * 116.99777 * 179.97438 * 11 9 7 13 13 H 1.07997 * 120.00177 * 0.02562 * 12 11 9 14 14 C 1.38760 * 119.99844 * 180.02562 * 12 11 9 15 15 N 1.31438 * 119.99978 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99912 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47405 * 89.99682 * 16 14 12 18 18 H 1.48508 * 109.47247 * 209.99874 * 16 14 12 19 19 H 1.48503 * 109.46999 * 329.99653 * 16 14 12 20 20 C 1.54316 * 107.27365 * 180.79395 * 7 6 4 21 21 C 1.55160 * 102.94268 * 22.19228 * 20 7 6 22 22 C 1.47425 * 125.64767 * 179.71720 * 6 4 3 23 23 H 1.08998 * 110.36859 * 37.30006 * 22 6 4 24 24 C 1.50703 * 110.36434 * 274.97367 * 22 6 4 25 25 C 1.34516 * 125.78688 * 140.00031 * 24 22 6 26 26 C 1.41384 * 106.84070 * 180.02562 * 25 24 22 27 27 C 1.34508 * 106.83797 * 359.97438 * 26 25 24 28 28 C 1.50701 * 125.78509 * 180.02562 * 27 26 25 29 29 O 1.34296 * 125.79227 * 319.69421 * 24 22 6 30 30 H 1.09000 * 109.47312 * 59.99574 * 1 2 3 31 31 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46949 * 299.99578 * 1 2 3 33 33 H 1.08998 * 109.46949 * 240.00422 * 2 1 3 34 34 H 1.08995 * 109.47119 * 120.00020 * 2 1 3 35 35 H 0.97002 * 120.00303 * 180.02562 * 15 14 12 36 36 H 1.08997 * 110.72381 * 140.55486 * 20 7 6 37 37 H 1.09002 * 110.72355 * 263.82891 * 20 7 6 38 38 H 1.08991 * 111.00600 * 82.57442 * 21 20 7 39 39 H 1.09004 * 111.00084 * 206.38888 * 21 20 7 40 40 H 1.08002 * 126.58220 * 0.03959 * 25 24 22 41 41 H 1.08001 * 126.57794 * 180.02562 * 26 25 24 42 42 H 1.09007 * 109.47134 * 90.00650 * 28 27 26 43 43 H 1.09003 * 109.47091 * 209.99843 * 28 27 26 44 44 H 1.08993 * 109.47572 * 330.00196 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5455 -0.0005 5 8 4.0889 0.5819 -0.0015 6 7 3.8638 2.7909 0.0000 7 6 3.0873 4.0393 0.0016 8 1 2.4527 4.0823 -0.8836 9 6 2.2412 4.1150 1.2464 10 8 2.2770 3.2164 2.0591 11 8 1.4467 5.1776 1.4548 12 6 0.7152 5.1825 2.5885 13 1 0.7853 4.3559 3.2800 14 6 -0.1272 6.2497 2.8660 15 7 -0.2121 7.2559 2.0247 16 14 -1.1394 6.2568 4.4360 17 1 -0.3639 6.9083 5.5220 18 1 -2.4001 7.0080 4.2087 19 1 -1.4588 4.8598 4.8253 20 6 4.0964 5.2066 -0.0188 21 6 5.3756 4.5500 -0.6020 22 6 5.2992 3.1270 0.0054 23 1 5.8564 2.4213 -0.6107 24 6 5.8320 3.1291 1.4151 25 6 7.0281 2.6526 1.8047 26 6 7.1144 2.8549 3.2013 27 6 5.9662 3.4433 3.5815 28 6 5.6080 3.8502 4.9876 29 8 5.1956 3.6122 2.4945 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 -0.8007 8.0021 2.2189 36 1 3.7449 6.0090 -0.6674 37 1 4.2786 5.5767 0.9901 38 1 5.3342 4.5130 -1.6905 39 1 6.2711 5.0719 -0.2646 40 1 7.7786 2.2022 1.1720 41 1 7.9436 2.5888 3.8401 42 1 5.9420 4.8723 5.1664 43 1 4.5273 3.7931 5.1183 44 1 6.0954 3.1797 5.6953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495849021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:03 Heat of formation + Delta-G solvation = -132.172426 kcal Electronic energy + Delta-G solvation = -31357.770244 eV Core-core repulsion = 27050.147759 eV Total energy + Delta-G solvation = -4307.622485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36178 -40.43022 -39.02542 -37.82825 -35.95558 -34.93483 -32.87895 -32.30742 -32.15284 -31.72989 -30.90706 -29.63371 -26.41268 -25.10314 -24.11983 -22.70960 -21.83682 -21.34525 -21.08701 -20.03921 -19.45425 -17.79060 -17.70562 -17.29216 -16.68145 -16.10420 -16.03930 -15.78452 -14.96592 -14.56687 -14.34226 -14.31847 -14.05594 -13.95683 -13.54814 -13.10956 -12.97219 -12.76891 -12.73672 -12.62932 -12.50250 -12.48252 -12.19192 -11.75410 -11.68791 -11.56752 -11.44949 -11.32618 -11.30064 -11.10889 -10.86088 -10.43002 -10.31417 -10.26993 -10.18880 -9.76340 -9.58464 -9.25483 -8.55011 -8.53100 -8.03051 -6.36948 -4.03531 1.86931 2.31127 2.84494 3.03762 3.12393 3.19531 3.24919 3.30102 3.57386 3.87440 4.12115 4.46083 4.57190 4.71720 4.75935 5.01093 5.13924 5.15184 5.19900 5.21097 5.26705 5.36532 5.46227 5.49326 5.60386 5.64663 5.68809 5.69369 5.78086 5.89771 5.96159 5.98748 6.06059 6.09636 6.14666 6.19998 6.36764 6.42759 6.65056 6.77689 6.81394 7.43342 7.49066 7.62886 8.00686 8.55745 8.79014 9.12498 9.91390 10.81290 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.008903 B = 0.005418 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.188567 B = 5166.660278 C = 6587.644260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.086 3.914 3 O -0.349 6.349 4 C 0.686 3.314 5 O -0.579 6.579 6 N -0.579 5.579 7 C 0.150 3.850 8 H 0.106 0.894 9 C 0.396 3.604 10 O -0.529 6.529 11 O -0.215 6.215 12 C -0.374 4.374 13 H 0.092 0.908 14 C 0.042 3.958 15 N -0.868 5.868 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.268 1.268 20 C -0.115 4.115 21 C -0.126 4.126 22 C 0.237 3.763 23 H 0.121 0.879 24 C -0.023 4.023 25 C -0.199 4.199 26 C -0.224 4.224 27 C -0.003 4.003 28 C -0.076 4.076 29 O -0.141 6.141 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.268 0.732 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.490 -6.027 -4.355 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 O -0.263 6.263 4 C 0.443 3.557 5 O -0.469 6.469 6 N -0.319 5.319 7 C 0.044 3.956 8 H 0.124 0.876 9 C 0.239 3.761 10 O -0.423 6.423 11 O -0.122 6.122 12 C -0.450 4.450 13 H 0.110 0.890 14 C -0.161 4.161 15 N -0.505 5.505 16 Si 0.763 3.237 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.153 4.153 21 C -0.164 4.164 22 C 0.135 3.865 23 H 0.138 0.862 24 C -0.075 4.075 25 C -0.219 4.219 26 C -0.243 4.243 27 C -0.054 4.054 28 C -0.133 4.133 29 O -0.036 6.036 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.159 -6.367 -4.161 12.691 hybrid contribution -0.364 -0.273 0.954 1.057 sum 9.795 -6.640 -3.207 12.260 Atomic orbital electron populations 1.21802 0.92673 1.02467 1.04010 1.22871 0.94914 0.79088 1.02031 1.86359 1.21309 1.32423 1.86170 1.17290 0.81368 0.82260 0.74805 1.90944 1.60294 1.38726 1.56931 1.46804 1.06258 1.02810 1.76059 1.21029 0.93484 0.84275 0.96769 0.87594 1.23058 0.82114 0.82743 0.88172 1.90578 1.66059 1.39452 1.46205 1.83859 1.47854 1.39179 1.41348 1.21132 1.20440 1.06817 0.96656 0.89011 1.25252 0.97186 0.94638 0.99050 1.69981 1.37043 1.08022 1.35486 0.85749 0.78783 0.78758 0.80361 1.20004 1.20375 1.19248 1.22609 0.92753 0.96108 1.03847 1.22965 0.99558 0.92829 1.01080 1.20254 0.79898 0.98330 0.88044 0.86162 1.22519 0.93092 1.02833 0.89041 1.21412 0.98209 1.06707 0.95529 1.21429 0.99467 1.07994 0.95452 1.22518 0.90840 1.02718 0.89339 1.20303 1.03983 1.01939 0.87037 1.84169 1.42207 1.62666 1.14511 0.91580 0.90394 0.91020 0.91711 0.91503 0.92245 0.88095 0.89414 0.88931 0.88649 0.83746 0.83889 0.90209 0.90043 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.29 37.16 0.38 -1.63 16 2 C 0.09 1.36 6.19 37.16 0.23 1.59 16 3 O -0.35 -7.01 8.75 -45.31 -0.40 -7.40 16 4 C 0.69 14.00 7.72 54.05 0.42 14.42 16 5 O -0.58 -12.39 16.39 -19.28 -0.32 -12.70 16 6 N -0.58 -10.68 2.48 -163.90 -0.41 -11.08 16 7 C 0.15 2.82 3.39 -68.11 -0.23 2.59 16 8 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 9 C 0.40 9.77 6.68 36.01 0.24 10.01 16 10 O -0.53 -14.36 13.95 -24.21 -0.34 -14.70 16 11 O -0.22 -6.06 9.72 -20.70 -0.20 -6.26 16 12 C -0.37 -10.98 9.65 30.93 0.30 -10.68 16 13 H 0.09 2.76 6.86 -52.49 -0.36 2.40 16 14 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 15 N -0.87 -25.10 13.67 55.48 0.76 -24.34 16 16 Si 0.94 21.35 29.55 -169.99 -5.02 16.32 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C -0.12 -1.76 6.13 -24.90 -0.15 -1.91 16 21 C -0.13 -1.47 6.56 -24.58 -0.16 -1.63 16 22 C 0.24 3.58 3.19 -67.57 -0.22 3.36 16 23 H 0.12 1.59 8.04 -51.93 -0.42 1.17 16 24 C -0.02 -0.39 5.99 -35.62 -0.21 -0.60 16 25 C -0.20 -3.00 10.81 -39.70 -0.43 -3.43 16 26 C -0.22 -3.35 10.81 -39.70 -0.43 -3.78 16 27 C 0.00 -0.05 7.32 -35.63 -0.26 -0.31 16 28 C -0.08 -1.04 10.42 36.01 0.38 -0.67 16 29 O -0.14 -2.79 9.91 5.72 0.06 -2.73 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.56 7.51 -51.93 -0.39 1.17 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -37.29 380.77 -6.59 -43.87 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.21 Total: 4.85 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.24 Total: 8.42 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.35 Total: -35.42 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -1.19 Total: -43.79 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.29 -6.59 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495849021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.298 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds