Wall clock time and date at job start Tue Mar 31 2020 20:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46999 * 2 1 4 4 C 1.46501 * 119.99954 * 275.82019 * 3 2 1 5 5 C 1.50690 * 109.47310 * 275.28049 * 4 3 2 6 6 H 1.07997 * 120.00336 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99943 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00009 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99951 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47375 * 90.00077 * 9 7 5 11 11 H 1.48497 * 109.47198 * 209.99744 * 9 7 5 12 12 H 1.48500 * 109.47197 * 329.99651 * 9 7 5 13 13 S 1.65596 * 119.99737 * 96.10461 * 3 2 1 14 14 O 1.42101 * 106.40015 * 196.43079 * 13 3 2 15 15 O 1.42099 * 106.40541 * 329.34634 * 13 3 2 16 16 N 1.65597 * 107.22210 * 82.89223 * 13 3 2 17 17 C 1.46499 * 120.00322 * 67.00592 * 16 13 3 18 18 H 1.08996 * 109.46780 * 336.58751 * 17 16 13 19 19 C 1.53006 * 109.46680 * 96.58292 * 17 16 13 20 20 C 1.50693 * 109.47479 * 216.58263 * 17 16 13 21 21 C 1.38388 * 119.92269 * 319.99814 * 20 17 16 22 22 C 1.38339 * 120.30227 * 179.97438 * 21 20 17 23 23 C 1.37969 * 120.15787 * 359.97438 * 22 21 20 24 24 C 1.39616 * 119.84030 * 0.02562 * 23 22 21 25 25 C 1.43198 * 120.15004 * 180.02562 * 24 23 22 26 26 N 7.82779 * 158.66712 * 254.26371 * 2 1 3 27 27 C 1.37922 * 119.92585 * 139.72470 * 20 17 16 28 28 H 1.09002 * 109.47257 * 185.02446 * 1 2 3 29 29 H 1.08997 * 109.47161 * 305.02953 * 1 2 3 30 30 H 1.09003 * 109.46672 * 65.03073 * 1 2 3 31 31 H 1.09000 * 109.47055 * 239.99487 * 2 1 3 32 32 H 1.08999 * 109.46767 * 119.99975 * 2 1 3 33 33 H 1.08999 * 109.46792 * 35.28428 * 4 3 2 34 34 H 1.09003 * 109.46576 * 155.27634 * 4 3 2 35 35 H 0.97002 * 119.99989 * 180.02562 * 8 7 5 36 36 H 0.97010 * 120.00109 * 247.01507 * 16 13 3 37 37 H 1.08997 * 109.46823 * 299.99947 * 19 17 16 38 38 H 1.08994 * 109.47210 * 60.00137 * 19 17 16 39 39 H 1.08998 * 109.46694 * 180.02562 * 19 17 16 40 40 H 1.08001 * 119.84752 * 0.02562 * 21 20 17 41 41 H 1.08010 * 119.92311 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.08357 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.07679 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1412 2.1147 -1.2622 5 6 3.4662 1.7925 -1.9035 6 1 4.1489 1.1101 -1.4192 7 6 3.8071 2.3691 -3.1087 8 7 4.9638 2.0884 -3.6681 9 14 2.6268 3.5502 -3.9460 10 1 2.9043 4.9353 -3.4881 11 1 2.8074 3.4700 -5.4178 12 1 1.2303 3.1841 -3.5981 13 16 2.4381 2.1109 1.4260 14 8 2.4902 3.5063 1.1625 15 8 1.6086 1.5398 2.4285 16 7 3.9871 1.6435 1.7786 17 6 5.0965 2.0837 0.9290 18 1 4.7182 2.3319 -0.0626 19 6 5.7539 3.3188 1.5481 20 6 6.1128 0.9768 0.8164 21 6 6.4263 0.2119 1.9263 22 6 7.3578 -0.8065 1.8317 23 6 7.9806 -1.0666 0.6283 24 6 7.6690 -0.2989 -0.4954 25 6 8.3110 -0.5635 -1.7478 26 7 8.8215 -0.7723 -2.7409 27 6 6.7244 0.7247 -0.3939 28 1 -0.3634 -1.0237 0.0900 29 1 -0.3633 0.5899 0.8415 30 1 -0.3633 0.4338 -0.9317 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3326 1.8226 -1.9323 34 1 2.0826 3.1855 -1.0672 35 1 5.2038 2.4943 -4.5158 36 1 4.1600 1.0781 2.5477 37 1 5.0187 4.1194 1.6295 38 1 6.1321 3.0705 2.5397 39 1 6.5790 3.6465 0.9157 40 1 5.9410 0.4105 2.8704 41 1 7.5976 -1.3999 2.7017 42 1 8.7073 -1.8622 0.5557 43 1 6.4759 1.3197 -1.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619711237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:31 Heat of formation + Delta-G solvation = -24.900328 kcal Electronic energy + Delta-G solvation = -28268.127346 eV Core-core repulsion = 24440.202151 eV Total energy + Delta-G solvation = -3827.925195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.59505 -36.86681 -36.50785 -36.20574 -35.43773 -35.30593 -32.74914 -31.17686 -30.90347 -30.28199 -28.77314 -27.19840 -24.05047 -23.24726 -22.94189 -21.65949 -21.22246 -18.91112 -18.33595 -17.43523 -16.98153 -16.76958 -16.06140 -15.85483 -15.29398 -14.91340 -14.34841 -14.11402 -13.99209 -13.78946 -13.54288 -13.27517 -13.16859 -12.87113 -12.75215 -12.53563 -12.48503 -12.34724 -12.08474 -12.00150 -11.86544 -11.61053 -11.49522 -11.44640 -11.34341 -11.19869 -11.13401 -11.03397 -10.60945 -10.53559 -10.39000 -10.18837 -9.62573 -9.28148 -8.78396 -8.73089 -8.65519 -8.18107 -6.26261 -4.26824 0.94250 1.16102 1.48030 2.98837 3.15475 3.22245 3.29320 3.33073 3.43455 4.04058 4.08617 4.15090 4.28750 4.78332 4.90188 4.97359 5.06877 5.18250 5.27558 5.31688 5.51348 5.58296 5.62847 5.68212 5.69969 5.76595 5.92171 6.00629 6.08801 6.13116 6.22321 6.36642 6.38984 6.47540 6.49628 6.56258 6.58424 6.78674 6.83372 6.99676 7.07130 7.21253 7.41220 7.49997 7.79513 8.30330 8.73461 9.35363 10.84143 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.008994 B = 0.006165 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.362576 B = 4540.433332 C = 6235.961609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.211 3.789 5 C -0.552 4.552 6 H 0.089 0.911 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.867 3.133 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.785 3.215 14 O -0.977 6.977 15 O -0.998 6.998 16 N -1.122 6.122 17 C 0.173 3.827 18 H 0.141 0.859 19 C -0.162 4.162 20 C -0.079 4.079 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.079 4.079 24 C -0.028 4.028 25 C 0.260 3.740 26 N -0.422 5.422 27 C -0.042 4.042 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.404 0.596 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -4.361 12.008 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.828 5.828 4 C 0.087 3.913 5 C -0.590 4.590 6 H 0.107 0.893 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 S 2.793 3.207 14 O -0.961 6.961 15 O -0.982 6.982 16 N -0.880 5.880 17 C 0.066 3.934 18 H 0.158 0.842 19 C -0.221 4.221 20 C -0.081 4.081 21 C -0.107 4.107 22 C -0.146 4.146 23 C -0.099 4.099 24 C -0.031 4.031 25 C -0.055 4.055 26 N -0.097 5.097 27 C -0.063 4.063 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.709 -3.920 10.643 11.470 hybrid contribution -0.385 0.064 -0.191 0.435 sum 1.324 -3.856 10.452 11.219 Atomic orbital electron populations 1.22215 0.96895 1.01511 1.02318 1.20987 0.93572 0.82490 1.02467 1.57524 1.78593 1.23060 1.23576 1.19620 0.98372 0.92176 0.81125 1.21506 1.01902 1.29197 1.06430 0.89305 1.24811 0.94949 0.95842 0.96641 1.69827 1.20992 1.43190 1.18339 0.86975 0.82303 0.82301 0.79018 1.19695 1.21176 1.18893 1.01804 0.72588 0.73753 0.72590 1.93575 1.86571 1.30707 1.85222 1.93562 1.65797 1.79971 1.58847 1.56169 1.24885 1.67608 1.39316 1.20150 0.85232 0.90798 0.97171 0.84188 1.22261 1.01510 0.97709 1.00590 1.19924 0.97751 0.97443 0.92954 1.21130 0.96529 0.94751 0.98264 1.20928 0.97697 0.98610 0.97338 1.21095 0.99048 0.98168 0.91605 1.16000 0.99665 0.99982 0.87459 1.25634 0.93333 0.93632 0.92894 1.81182 1.09925 1.08325 1.10232 1.21561 0.91561 0.94556 0.98595 0.92254 0.92429 0.92349 0.89922 0.91813 0.94523 0.93766 0.92286 0.76253 0.90915 0.92795 0.91370 0.85844 0.85410 0.85546 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.23 37.16 0.38 -2.06 16 2 C 0.13 2.07 6.07 -4.04 -0.02 2.04 16 3 N -0.99 -18.10 2.83 -115.67 -0.33 -18.42 16 4 C 0.21 4.49 4.47 -5.20 -0.02 4.46 16 5 C -0.55 -12.94 7.97 -34.44 -0.27 -13.22 16 6 H 0.09 2.12 6.46 -52.49 -0.34 1.78 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -23.47 13.96 55.43 0.77 -22.70 16 9 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 13 S 2.78 49.58 5.98 -107.50 -0.64 48.93 16 14 O -0.98 -20.25 15.98 -57.17 -0.91 -21.16 16 15 O -1.00 -18.58 17.28 -57.17 -0.99 -19.57 16 16 N -1.12 -16.24 5.47 -5.88 -0.03 -16.27 16 17 C 0.17 2.66 2.84 -69.08 -0.20 2.47 16 18 H 0.14 2.64 4.61 -51.93 -0.24 2.40 16 19 C -0.16 -2.24 9.49 37.16 0.35 -1.89 16 20 C -0.08 -1.10 4.95 -104.69 -0.52 -1.62 16 21 C -0.09 -0.96 9.17 -39.49 -0.36 -1.32 16 22 C -0.13 -1.25 10.03 -39.64 -0.40 -1.64 16 23 C -0.08 -0.87 9.76 -39.17 -0.38 -1.25 16 24 C -0.03 -0.40 5.73 -106.93 -0.61 -1.01 16 25 C 0.26 4.37 15.33 -22.47 -0.34 4.02 16 26 N -0.42 -7.96 18.54 41.84 0.78 -7.18 16 27 C -0.04 -0.66 8.95 -39.17 -0.35 -1.01 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.86 8.07 -51.93 -0.42 0.45 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.06 0.89 7.77 -51.93 -0.40 0.48 16 33 H 0.04 0.78 7.17 -51.93 -0.37 0.41 16 34 H 0.04 0.99 6.30 -51.93 -0.33 0.66 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.40 4.65 7.10 -34.47 -0.24 4.40 16 37 H 0.07 1.10 7.82 -51.93 -0.41 0.69 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.12 1.08 6.80 -52.49 -0.36 0.72 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.16 3.02 7.85 -52.48 -0.41 2.61 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -29.70 373.78 -8.89 -38.58 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.64 Total: 7.21 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.85 Total: -10.07 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 1.19 Total: -64.57 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.90 Total: -40.73 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Atomic # 16 Polarization: 49.58 SS G_CDS: -0.64 Total: 48.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.70 -8.89 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619711237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.681 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds