Wall clock time and date at job start Tue Mar 31 2020 20:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36907 * 124.99236 * 2 1 4 4 C 1.34226 * 109.92082 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.57353 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46948 * 264.97418 * 5 4 3 7 7 N 1.46507 * 109.46882 * 179.97438 * 6 5 4 8 8 S 1.65599 * 119.99614 * 164.99858 * 7 6 5 9 9 O 1.42106 * 104.27232 * 181.07388 * 8 7 6 10 10 O 1.42097 * 104.27807 * 308.93114 * 8 7 6 11 11 C 1.81398 * 104.44829 * 65.00506 * 8 7 6 12 12 C 1.53004 * 109.47182 * 179.97438 * 11 8 7 13 13 C 1.50698 * 109.47093 * 180.02562 * 12 11 8 14 14 H 1.07997 * 120.00100 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99813 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99849 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47232 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46932 * 120.00030 * 17 15 13 20 20 H 1.48498 * 109.47473 * 239.99976 * 17 15 13 21 21 C 1.46394 * 106.86128 * 0.02562 * 4 3 2 22 22 C 1.39688 * 134.31756 * 180.02562 * 21 4 3 23 23 C 1.38197 * 118.04418 * 180.02562 * 22 21 4 24 24 C 1.38668 * 119.40495 * 359.97438 * 23 22 21 25 25 N 1.31587 * 121.58680 * 0.25212 * 24 23 22 26 26 C 1.32653 * 121.67049 * 359.49012 * 25 24 23 27 27 H 1.08996 * 109.47248 * 270.02607 * 1 2 3 28 28 H 1.09004 * 109.47196 * 30.01977 * 1 2 3 29 29 H 1.08993 * 109.47660 * 150.01925 * 1 2 3 30 30 H 1.08002 * 125.04268 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.46765 * 24.97481 * 5 4 3 32 32 H 1.09000 * 109.47143 * 144.97340 * 5 4 3 33 33 H 1.08998 * 109.47438 * 299.99650 * 6 5 4 34 34 H 1.09007 * 109.47087 * 60.00306 * 6 5 4 35 35 H 0.97000 * 119.99805 * 345.00810 * 7 6 5 36 36 H 1.08997 * 109.47206 * 299.99715 * 11 8 7 37 37 H 1.09000 * 109.47028 * 59.99636 * 11 8 7 38 38 H 1.08999 * 109.46672 * 300.00302 * 12 11 8 39 39 H 1.08997 * 109.46661 * 59.99814 * 12 11 8 40 40 H 0.97000 * 119.99964 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.97565 * 0.02562 * 22 21 4 42 42 H 1.07998 * 120.29933 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.20350 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.1216 0.0000 4 6 3.5462 0.7726 0.0006 5 6 4.7279 1.7077 0.0013 6 6 5.2069 1.9253 -1.4354 7 7 6.3554 2.8349 -1.4347 8 16 7.3101 2.9639 -2.7816 9 8 8.3153 3.8974 -2.4105 10 8 7.6416 1.6208 -3.1062 11 6 6.2178 3.6731 -4.0443 12 6 6.9935 3.8439 -5.3521 13 6 6.0862 4.4336 -6.4009 14 1 5.0590 4.6633 -6.1591 15 6 6.5673 4.6791 -7.6696 16 7 7.8180 4.3989 -7.9641 17 14 5.4425 5.4094 -8.9698 18 1 4.0935 5.6307 -8.3898 19 1 6.0001 6.7045 -9.4357 20 1 5.3396 4.4732 -10.1179 21 6 3.5919 -0.6907 0.0003 22 6 4.6213 -1.6349 0.0011 23 6 4.2757 -2.9729 0.0000 24 6 2.9358 -3.3300 -0.0013 25 7 1.9811 -2.4244 -0.0064 26 6 2.2529 -1.1260 -0.0006 27 1 -0.3633 0.0005 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.8813 2.1367 -0.0004 31 1 4.4345 2.6636 0.4352 32 1 5.5348 1.2732 0.5914 33 1 5.5004 0.9694 -1.8693 34 1 4.4000 2.3599 -2.0255 35 1 6.5566 3.3614 -0.6453 36 1 5.3711 3.0066 -4.2082 37 1 5.8558 4.6445 -3.7075 38 1 7.8401 4.5106 -5.1879 39 1 7.3559 2.8727 -5.6890 40 1 8.1564 4.5712 -8.8567 41 1 5.6569 -1.3282 0.0025 42 1 5.0422 -3.7337 0.0010 43 1 2.6693 -4.3766 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867798288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:40 Heat of formation + Delta-G solvation = -10.766411 kcal Electronic energy + Delta-G solvation = -25979.391248 eV Core-core repulsion = 22152.078945 eV Total energy + Delta-G solvation = -3827.312303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82760 -38.21393 -36.64840 -36.16997 -35.39156 -33.88204 -33.78829 -31.73688 -31.15060 -30.37478 -28.88228 -26.11697 -25.59144 -23.72261 -23.23482 -22.18694 -21.65099 -19.82696 -18.83410 -17.59008 -17.21992 -17.09766 -16.51985 -16.25984 -16.06505 -15.77776 -15.44676 -14.74861 -14.67803 -14.54253 -14.50491 -13.69956 -13.65665 -13.37694 -13.27095 -13.10298 -12.68917 -12.54384 -12.42249 -12.35944 -11.78401 -11.73018 -11.58709 -11.50772 -11.39469 -11.30329 -11.09217 -10.94842 -10.42806 -10.39545 -10.37504 -9.77997 -9.57453 -9.45191 -8.99984 -8.60297 -8.50386 -8.09535 -6.12269 -4.17628 0.77799 0.84210 1.18601 2.29050 2.35468 3.19292 3.25137 3.32343 3.35621 3.70750 4.08005 4.26795 4.32293 4.38656 4.42462 4.65786 4.73412 4.82881 4.86846 4.89347 4.96369 5.02846 5.13105 5.20762 5.23060 5.25750 5.44071 5.45739 5.53432 5.62206 5.70214 5.79492 5.94342 6.07194 6.12558 6.23665 6.34756 6.50547 6.77222 6.88082 7.13059 7.31450 7.37755 7.79025 7.81025 8.18238 8.86041 9.47083 10.98863 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.002612 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.924811 B =10715.979709 C =11613.522799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.476 5.476 3 C 0.066 3.934 4 C -0.159 4.159 5 C -0.048 4.048 6 C 0.119 3.881 7 N -1.129 6.129 8 S 2.594 3.406 9 O -0.969 6.969 10 O -0.967 6.967 11 C -0.590 4.590 12 C 0.027 3.973 13 C -0.519 4.519 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.145 4.145 22 C -0.024 4.024 23 C -0.204 4.204 24 C 0.136 3.864 25 N -0.502 5.502 26 C 0.285 3.715 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.177 0.823 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.412 0.588 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 -9.923 20.506 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.162 5.162 3 C -0.059 4.059 4 C -0.167 4.167 5 C -0.087 4.087 6 C -0.007 4.007 7 N -0.886 5.886 8 S 2.691 3.309 9 O -0.959 6.959 10 O -0.957 6.957 11 C -0.723 4.723 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.152 4.152 22 C -0.051 4.051 23 C -0.225 4.225 24 C -0.029 4.029 25 N -0.215 5.215 26 C 0.053 3.947 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.194 0.806 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.615 -10.478 20.175 26.498 hybrid contribution -0.425 1.072 -0.643 1.320 sum -14.040 -9.406 19.531 25.828 Atomic orbital electron populations 1.21966 0.76515 1.04493 1.03055 1.43617 1.06298 1.03223 1.63035 1.21703 0.89661 0.90819 1.03678 1.20012 0.93732 0.91334 1.11663 1.20068 0.94664 0.97734 0.96281 1.21282 0.87739 0.93898 0.97806 1.55803 1.44913 1.56016 1.31909 1.05498 0.75443 0.74967 0.74975 1.93552 1.55577 1.65090 1.81677 1.93538 1.82316 1.35800 1.84027 1.30441 1.14887 1.11752 1.15247 1.18967 0.95449 0.98889 0.87874 1.21045 0.97225 1.42502 0.95126 0.92025 1.25072 0.95261 0.95541 0.98659 1.69964 1.14256 1.47520 1.21091 0.86419 0.80647 0.78862 0.81382 1.19674 1.20797 1.20804 1.19763 0.93359 0.94093 1.08016 1.21042 0.98904 0.91739 0.93394 1.21871 0.97778 0.96580 1.06279 1.22430 0.88163 0.97696 0.94659 1.66428 1.38626 0.99047 1.17368 1.18359 0.87812 0.87150 1.01339 0.91316 0.89776 0.89593 0.80582 0.90239 0.90224 0.90214 0.91693 0.75524 0.86384 0.86121 0.94816 0.94816 0.92587 0.84568 0.84498 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 11.07 59.85 0.66 1.17 16 2 N -0.48 -4.56 3.17 -123.66 -0.39 -4.95 16 3 C 0.07 0.56 11.21 -16.70 -0.19 0.37 16 4 C -0.16 -1.56 5.57 -102.76 -0.57 -2.13 16 5 C -0.05 -0.41 5.89 -27.88 -0.16 -0.58 16 6 C 0.12 1.31 6.11 -4.04 -0.02 1.28 16 7 N -1.13 -13.81 5.89 -10.61 -0.06 -13.87 16 8 S 2.59 45.61 5.46 -107.50 -0.59 45.02 16 9 O -0.97 -19.85 18.08 -57.54 -1.04 -20.89 16 10 O -0.97 -20.01 17.50 -57.54 -1.01 -21.01 16 11 C -0.59 -11.16 6.01 37.16 0.22 -10.94 16 12 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.15 -1.68 6.37 -105.11 -0.67 -2.35 16 22 C -0.02 -0.25 10.22 -39.06 -0.40 -0.65 16 23 C -0.20 -1.85 10.10 -39.44 -0.40 -2.24 16 24 C 0.14 1.30 11.14 -17.50 -0.20 1.11 16 25 N -0.50 -5.96 10.39 -12.27 -0.13 -6.09 16 26 C 0.29 3.41 7.90 -155.69 -1.23 2.18 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.41 4.05 8.62 -34.47 -0.30 3.75 16 36 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -38.20 381.77 -11.41 -49.61 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.16 Total: 1.44 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -3.50 Total: -25.40 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.15 Total: -50.71 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -2.05 Total: -41.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.59 Total: 45.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.20 -11.41 -49.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867798288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.842 kcal (2) G-P(sol) polarization free energy of solvation -38.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds