Wall clock time and date at job start Tue Mar 31 2020 20:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47066 * 2 1 4 4 C 1.34770 * 120.00042 * 276.98227 * 3 2 1 5 5 O 1.21630 * 119.99912 * 178.16571 * 4 3 2 6 6 C 1.47173 * 120.00215 * 358.16256 * 4 3 2 7 7 C 1.36610 * 125.16167 * 187.60394 * 6 4 3 8 8 C 1.36795 * 114.74374 * 179.78372 * 7 6 4 9 9 C 1.36616 * 114.74619 * 0.50375 * 8 7 6 10 10 C 1.47170 * 125.16443 * 179.76354 * 9 8 7 11 11 N 1.34775 * 120.00025 * 179.97438 * 10 9 8 12 12 O 1.21624 * 119.99532 * 359.97438 * 10 9 8 13 13 S 1.75837 * 125.15851 * 7.89978 * 6 4 3 14 14 C 1.46507 * 119.99599 * 97.26259 * 3 2 1 15 15 H 1.09002 * 110.88582 * 355.84001 * 14 3 2 16 16 C 1.55151 * 111.00667 * 119.72533 * 14 3 2 17 17 C 1.54322 * 102.94550 * 153.57220 * 16 14 3 18 18 N 1.47017 * 107.26792 * 337.80652 * 17 16 14 19 19 C 1.36937 * 125.64808 * 178.98476 * 18 17 16 20 20 H 1.07999 * 120.00125 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99773 * 359.97438 * 19 18 17 22 22 N 1.31614 * 120.00432 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00003 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47210 * 89.99766 * 23 21 19 25 25 H 1.48499 * 109.47211 * 209.99841 * 23 21 19 26 26 H 1.48499 * 109.46976 * 329.99710 * 23 21 19 27 27 C 1.47426 * 108.70517 * 358.93941 * 18 17 16 28 28 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46796 * 299.99890 * 1 2 3 30 30 H 1.09000 * 109.46630 * 60.00049 * 1 2 3 31 31 H 1.09002 * 109.47191 * 239.99927 * 2 1 3 32 32 H 1.09005 * 109.47052 * 120.00182 * 2 1 3 33 33 H 1.07996 * 122.62830 * 359.97438 * 7 6 4 34 34 H 1.08004 * 122.62944 * 180.22408 * 8 7 6 35 35 H 0.97001 * 119.99724 * 359.97438 * 11 10 9 36 36 H 0.96995 * 119.99916 * 179.97438 * 11 10 9 37 37 H 1.09004 * 110.71974 * 271.93728 * 16 14 3 38 38 H 1.09006 * 110.72154 * 35.20292 * 16 14 3 39 39 H 1.08997 * 109.87991 * 97.22429 * 17 16 14 40 40 H 1.08999 * 109.88077 * 218.39266 * 17 16 14 41 41 H 0.97004 * 120.00400 * 180.02562 * 22 21 19 42 42 H 1.08997 * 110.36930 * 265.29098 * 27 18 17 43 43 H 1.09001 * 110.36669 * 142.97099 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1092 2.0638 -1.1585 5 8 2.4829 3.2213 -1.1546 6 6 1.7563 1.4087 -2.4283 7 6 1.9470 1.9454 -3.6700 8 6 1.5447 1.1482 -4.7062 9 6 1.0077 -0.0505 -4.3305 10 6 0.4984 -1.0776 -5.2533 11 7 -0.0109 -2.2270 -4.7676 12 8 0.5372 -0.8891 -6.4542 13 16 1.0186 -0.1804 -2.5770 14 6 2.4137 2.0183 1.2587 15 1 2.2168 1.3610 2.1056 16 6 3.9047 2.4458 1.2213 17 6 3.9520 3.6226 2.2186 18 7 2.5859 4.1540 2.3316 19 6 2.1978 5.1935 3.1342 20 1 1.1655 5.5105 3.1457 21 6 3.1313 5.8396 3.9328 22 7 4.3893 5.4530 3.9192 23 14 2.6021 7.2581 5.0271 24 1 2.1964 6.7336 6.3558 25 1 3.7345 8.2043 5.1932 26 1 1.4548 7.9640 4.4022 27 6 1.7032 3.3832 1.4371 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3841 2.9213 -3.8217 34 1 1.6397 1.4451 -5.7403 35 1 -0.0415 -2.3774 -3.8098 36 1 -0.3469 -2.9037 -5.3758 37 1 4.5479 1.6314 1.5550 38 1 4.1863 2.7761 0.2214 39 1 4.2945 3.2703 3.1915 40 1 4.6216 4.3977 1.8458 41 1 5.0416 5.9043 4.4776 42 1 1.6034 3.8874 0.4759 43 1 0.7248 3.2444 1.8970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033990779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:31 Heat of formation + Delta-G solvation = 9.618411 kcal Electronic energy + Delta-G solvation = -27100.585202 eV Core-core repulsion = 23274.156852 eV Total energy + Delta-G solvation = -3826.428350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.32642 -39.83989 -37.62802 -36.53587 -35.83553 -34.15855 -32.54217 -30.61573 -30.19846 -28.95182 -27.38627 -25.83352 -24.34016 -23.73748 -22.19580 -21.66059 -20.08599 -19.91923 -19.43433 -17.95059 -17.50747 -17.16491 -16.78346 -16.21479 -15.40217 -15.37889 -15.16182 -14.96059 -14.55108 -14.49050 -14.15437 -13.87033 -13.42026 -13.36692 -12.95325 -12.84889 -12.49663 -12.34874 -12.17742 -11.94930 -11.77871 -11.61096 -11.16110 -10.88350 -10.85353 -10.77599 -10.53250 -10.36305 -10.21726 -10.08474 -9.96416 -9.63530 -9.32911 -9.12906 -8.76359 -8.59224 -8.43598 -6.72717 -5.65025 -2.97566 -0.15176 1.04524 1.41176 1.85772 2.80278 2.85146 3.02033 3.14254 3.43568 3.48734 3.51024 4.23343 4.48055 4.53308 4.56372 4.80234 4.94588 5.02756 5.12065 5.35302 5.39714 5.42462 5.47490 5.59396 5.67209 5.75126 5.78688 5.84827 5.92458 6.01521 6.11726 6.27090 6.43933 6.55964 6.59946 6.69373 6.78848 7.15400 7.39853 7.61648 7.70413 7.74803 7.88141 8.16731 8.32323 9.28224 9.88589 10.55002 11.46822 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.002635 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.438611 B =10621.966996 C =10937.246879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 N -0.597 5.597 4 C 0.577 3.423 5 O -0.492 6.492 6 C -0.218 4.218 7 C -0.075 4.075 8 C -0.063 4.063 9 C -0.286 4.286 10 C 0.596 3.404 11 N -0.850 5.850 12 O -0.531 6.531 13 S 0.219 5.781 14 C 0.132 3.868 15 H 0.096 0.904 16 C -0.154 4.154 17 C 0.185 3.815 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.123 3.877 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.399 0.601 36 H 0.409 0.591 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.052 0.948 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -19.862 -13.212 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 N -0.330 5.330 4 C 0.363 3.637 5 O -0.367 6.367 6 C -0.339 4.339 7 C -0.108 4.108 8 C -0.096 4.096 9 C -0.406 4.406 10 C 0.381 3.619 11 N -0.414 5.414 12 O -0.409 6.409 13 S 0.488 5.512 14 C 0.029 3.971 15 H 0.114 0.886 16 C -0.193 4.193 17 C 0.060 3.940 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.004 4.004 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.228 0.772 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.099 -19.923 -12.776 25.015 hybrid contribution 0.076 1.295 -0.167 1.308 sum -8.023 -18.628 -12.943 24.060 Atomic orbital electron populations 1.22496 0.95103 1.03110 1.03634 1.21906 0.95271 0.83355 1.02873 1.47863 1.64656 1.13205 1.07237 1.17103 0.78845 0.85955 0.81791 1.90901 1.44946 1.15320 1.85531 1.25131 1.10771 0.99395 0.98625 1.20593 0.99159 1.01539 0.89499 1.20536 0.96238 0.91513 1.01276 1.25502 1.12761 1.01031 1.01286 1.17134 0.76613 0.81081 0.87077 1.43671 1.66025 1.19867 1.11861 1.90858 1.56198 1.78746 1.15081 1.84560 1.56212 1.14650 0.95747 1.22533 0.96650 0.95382 0.82545 0.88634 1.23255 0.94020 0.99894 1.02124 1.21059 0.87077 0.91048 0.94834 1.44313 1.03852 1.36871 1.47817 1.19039 0.94088 1.06436 1.15557 0.90538 1.24787 0.95601 0.99853 1.00357 1.69960 1.01093 1.43125 1.42924 0.86115 0.77264 0.81911 0.80461 1.21700 1.21704 1.20743 1.21954 0.92999 0.89741 0.95682 0.90653 0.90797 0.91584 0.90678 0.88228 0.82199 0.82953 0.77226 0.75965 0.92442 0.91031 0.93658 0.93855 0.93828 0.93042 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.93 37.16 0.33 -1.04 16 2 C 0.09 0.81 5.67 -4.04 -0.02 0.78 16 3 N -0.60 -8.18 2.58 -165.02 -0.43 -8.60 16 4 C 0.58 8.88 6.88 -12.64 -0.09 8.79 16 5 O -0.49 -9.74 12.88 5.25 0.07 -9.67 16 6 C -0.22 -2.61 6.14 -36.54 -0.22 -2.83 16 7 C -0.08 -0.86 9.89 -40.69 -0.40 -1.26 16 8 C -0.06 -0.65 9.88 -40.69 -0.40 -1.06 16 9 C -0.29 -2.76 6.46 -36.54 -0.24 -3.00 16 10 C 0.60 5.87 8.08 -12.63 -0.10 5.76 16 11 N -0.85 -4.63 8.87 30.37 0.27 -4.36 16 12 O -0.53 -7.25 17.65 5.26 0.09 -7.16 16 13 S 0.22 1.71 14.57 -107.50 -1.57 0.14 16 14 C 0.13 2.26 3.54 -65.78 -0.23 2.03 16 15 H 0.10 1.48 7.83 -51.93 -0.41 1.08 16 16 C -0.15 -2.99 6.33 -24.90 -0.16 -3.15 16 17 C 0.18 4.64 5.37 -3.07 -0.02 4.62 16 18 N -0.60 -15.90 3.39 -170.08 -0.58 -16.48 16 19 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.67 10.31 55.49 0.57 -27.09 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.12 2.67 6.58 -2.53 -0.02 2.65 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.54 6.02 -44.47 -0.27 0.27 16 31 H 0.08 0.57 4.43 -21.90 -0.10 0.47 16 32 H 0.10 0.73 7.85 -51.93 -0.41 0.32 16 33 H 0.16 1.81 8.05 -52.49 -0.42 1.39 16 34 H 0.15 1.47 8.04 -52.48 -0.42 1.05 16 35 H 0.40 1.23 7.93 -40.82 -0.32 0.90 16 36 H 0.41 1.58 8.93 -40.82 -0.36 1.22 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.47 6.32 -51.93 -0.33 1.15 16 39 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 40 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.05 1.22 5.45 -51.93 -0.28 0.93 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -36.45 355.09 -8.39 -44.84 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.33 Total: 0.13 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.82 Total: 5.38 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.16 Total: -56.54 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.16 Total: -16.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.57 Total: 0.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.45 -8.39 -44.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033990779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.461 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds