Wall clock time and date at job start Tue Mar 31 2020 20:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47109 * 2 1 4 4 C 1.34773 * 119.99766 * 273.16647 * 3 2 1 5 5 O 1.21626 * 120.00155 * 4.09662 * 4 3 2 6 6 C 1.47172 * 120.00130 * 184.09586 * 4 3 2 7 7 C 1.36613 * 125.16181 * 173.29289 * 6 4 3 8 8 C 1.36801 * 114.74017 * 179.84968 * 7 6 4 9 9 C 1.36610 * 114.74760 * 0.43273 * 8 7 6 10 10 C 1.47167 * 125.16216 * 179.76520 * 9 8 7 11 11 N 1.34774 * 120.00182 * 180.02562 * 10 9 8 12 12 O 1.21624 * 120.00421 * 0.02562 * 10 9 8 13 13 S 1.75833 * 125.15878 * 353.59015 * 6 4 3 14 14 C 1.46494 * 120.00156 * 93.17256 * 3 2 1 15 15 H 1.09002 * 110.64174 * 228.33111 * 14 3 2 16 16 C 1.55160 * 110.72364 * 104.99664 * 14 3 2 17 17 C 1.54914 * 101.58040 * 277.13885 * 16 14 3 18 18 N 1.47426 * 104.82872 * 322.98841 * 17 16 14 19 19 C 1.36937 * 125.64405 * 204.16058 * 18 17 16 20 20 H 1.08007 * 119.99989 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00481 * 359.96480 * 19 18 17 22 22 N 1.31620 * 119.99484 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00373 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47062 * 60.00113 * 23 21 19 25 25 H 1.48499 * 109.47144 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47534 * 300.00143 * 23 21 19 27 27 C 1.47025 * 108.70651 * 24.13074 * 18 17 16 28 28 H 1.09006 * 109.47196 * 60.00377 * 1 2 3 29 29 H 1.08996 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47329 * 300.00506 * 1 2 3 31 31 H 1.09002 * 109.46627 * 120.00076 * 2 1 3 32 32 H 1.08992 * 109.46864 * 239.99563 * 2 1 3 33 33 H 1.07995 * 122.62910 * 0.02763 * 7 6 4 34 34 H 1.08005 * 122.62720 * 180.17011 * 8 7 6 35 35 H 0.97006 * 120.00306 * 359.97438 * 11 10 9 36 36 H 0.97002 * 120.00356 * 180.02562 * 11 10 9 37 37 H 1.09003 * 111.00008 * 35.21037 * 16 14 3 38 38 H 1.09000 * 111.00572 * 159.06652 * 16 14 3 39 39 H 1.08995 * 110.36639 * 204.15473 * 17 16 14 40 40 H 1.08997 * 110.36466 * 81.82866 * 17 16 14 41 41 H 0.96999 * 120.00187 * 180.02562 * 22 21 19 42 42 H 1.08995 * 109.87874 * 239.52106 * 27 18 17 43 43 H 1.08997 * 109.87920 * 118.35727 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1821 2.0380 -1.1654 5 8 1.8546 1.5112 -2.2116 6 6 2.7574 3.3926 -1.1722 7 6 3.0898 4.1006 -2.2922 8 6 3.6072 5.3438 -2.0511 9 6 3.7159 5.6715 -0.7294 10 6 4.2447 6.9438 -0.2123 11 7 4.3056 7.1579 1.1169 12 8 4.6270 7.8022 -0.9845 13 16 3.1279 4.3424 0.2604 14 6 2.3287 2.0484 1.2667 15 1 1.8709 3.0370 1.3026 16 6 3.8632 2.1420 1.4764 17 6 4.1835 0.7425 2.0584 18 7 3.0341 0.4218 2.9240 19 6 3.0501 -0.4470 3.9824 20 1 2.1513 -0.6142 4.5575 21 6 4.2214 -1.1131 4.3161 22 7 5.3165 -0.9099 3.6148 23 14 4.2434 -2.2976 5.7602 24 1 3.2659 -3.3894 5.5198 25 1 5.6037 -2.8751 5.9061 26 1 3.8778 -1.5707 7.0024 27 6 1.8680 1.1897 2.4634 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.9521 3.7106 -3.2898 34 1 3.9101 6.0122 -2.8436 35 1 4.0004 6.4735 1.7329 36 1 4.6538 7.9967 1.4577 37 1 4.3782 2.2982 0.5285 38 1 4.1129 2.9280 2.1891 39 1 5.1019 0.7765 2.6444 40 1 4.2709 0.0093 1.2566 41 1 6.1349 -1.3756 3.8476 42 1 1.5082 1.8341 3.2654 43 1 1.0769 0.5092 2.1486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033990780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:35 Heat of formation + Delta-G solvation = 7.103052 kcal Electronic energy + Delta-G solvation = -27763.785274 eV Core-core repulsion = 23937.247849 eV Total energy + Delta-G solvation = -3826.537425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28197 -39.67359 -38.01346 -36.88339 -34.73148 -33.96674 -32.60245 -31.43307 -29.59800 -28.99780 -27.69568 -25.88988 -24.78392 -23.20395 -21.88285 -21.49486 -20.43541 -19.99047 -19.15612 -17.96457 -17.26205 -17.04138 -16.95830 -16.10986 -15.66730 -15.25047 -15.10464 -14.89062 -14.79265 -14.21538 -14.04501 -13.61445 -13.33162 -13.15569 -12.91283 -12.73601 -12.40335 -12.32955 -12.18283 -11.84195 -11.73584 -11.41515 -11.09081 -10.94375 -10.79901 -10.68778 -10.44084 -10.39599 -10.23544 -10.18423 -10.02197 -9.87484 -9.80402 -9.00689 -8.80423 -8.59575 -8.37046 -7.02532 -5.80199 -3.23835 0.01305 1.25158 1.63337 1.98116 2.94196 2.99364 3.21149 3.22065 3.31632 3.36733 3.38017 4.34808 4.40591 4.68160 4.81834 5.00541 5.10019 5.25032 5.27245 5.36834 5.37558 5.45281 5.53425 5.68228 5.77183 5.88113 5.97338 6.02317 6.11181 6.15432 6.15915 6.24304 6.31298 6.42895 6.46300 6.49073 6.69036 6.98475 7.32333 7.44242 7.47538 7.68487 7.92952 8.14970 8.18141 9.05175 9.65525 10.27559 11.23243 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003932 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.794374 B = 7118.970969 C = 8577.198863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.583 5.583 4 C 0.585 3.415 5 O -0.531 6.531 6 C -0.227 4.227 7 C -0.077 4.077 8 C -0.070 4.070 9 C -0.286 4.286 10 C 0.597 3.403 11 N -0.849 5.849 12 O -0.535 6.535 13 S 0.249 5.751 14 C 0.107 3.893 15 H 0.082 0.918 16 C -0.168 4.168 17 C 0.159 3.841 18 N -0.600 5.600 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.131 3.869 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.401 0.599 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.016 0.984 41 H 0.255 0.745 42 H 0.038 0.962 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 11.181 -4.989 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.315 5.315 4 C 0.372 3.628 5 O -0.410 6.410 6 C -0.349 4.349 7 C -0.111 4.111 8 C -0.103 4.103 9 C -0.407 4.407 10 C 0.382 3.618 11 N -0.413 5.413 12 O -0.413 6.413 13 S 0.521 5.479 14 C 0.001 3.999 15 H 0.099 0.901 16 C -0.209 4.209 17 C 0.034 3.966 18 N -0.327 5.327 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.567 5.567 23 Si 0.746 3.254 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.005 3.995 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.230 0.770 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.314 10.960 -4.447 12.967 hybrid contribution 0.187 -0.303 -0.307 0.470 sum -5.127 10.657 -4.754 12.746 Atomic orbital electron populations 1.22165 0.96003 1.02189 1.01927 1.21628 0.94116 0.81125 1.04689 1.47833 1.64018 1.14626 1.04982 1.17058 0.78310 0.83576 0.83904 1.90787 1.51135 1.67811 1.31232 1.24995 1.11999 1.00377 0.97543 1.20480 0.98034 0.93036 0.99510 1.20451 0.98305 0.96149 0.95397 1.25532 1.13586 1.01445 1.00128 1.17120 0.77088 0.85173 0.82420 1.43692 1.68116 1.22665 1.06825 1.90839 1.48452 1.45141 1.56848 1.85054 1.55308 1.02003 1.05497 1.22441 0.97779 0.94993 0.84684 0.90120 1.23732 0.93039 1.02860 1.01238 1.21949 0.94175 0.87668 0.92795 1.44491 1.04883 1.49475 1.33821 1.18987 0.96148 1.16197 1.04415 0.90352 1.24778 0.95719 1.00222 0.99372 1.69755 1.00631 1.45470 1.40846 0.86148 0.76796 0.80643 0.81851 1.21134 1.21547 1.21089 1.21615 0.92485 0.93709 0.91738 0.92585 0.91613 0.92335 0.87490 0.90423 0.82622 0.83146 0.77009 0.75985 0.91285 0.90064 0.87188 0.96605 0.93467 0.94413 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.89 37.16 0.37 -1.85 16 2 C 0.11 1.68 5.31 -4.04 -0.02 1.66 16 3 N -0.58 -9.16 2.57 -165.39 -0.42 -9.58 16 4 C 0.58 9.43 7.44 -12.64 -0.09 9.34 16 5 O -0.53 -9.81 16.50 5.25 0.09 -9.72 16 6 C -0.23 -3.12 5.72 -36.54 -0.21 -3.33 16 7 C -0.08 -0.97 9.89 -40.69 -0.40 -1.37 16 8 C -0.07 -0.83 9.88 -40.69 -0.40 -1.23 16 9 C -0.29 -3.41 6.46 -36.55 -0.24 -3.65 16 10 C 0.60 7.23 8.07 -12.64 -0.10 7.13 16 11 N -0.85 -7.01 8.87 30.37 0.27 -6.74 16 12 O -0.53 -8.26 17.65 5.26 0.09 -8.16 16 13 S 0.25 2.80 14.33 -107.50 -1.54 1.26 16 14 C 0.11 1.61 2.66 -66.10 -0.18 1.43 16 15 H 0.08 1.04 5.48 -29.03 -0.16 0.88 16 16 C -0.17 -2.71 4.45 -24.58 -0.11 -2.82 16 17 C 0.16 3.42 5.74 -2.53 -0.01 3.41 16 18 N -0.60 -13.29 2.99 -170.07 -0.51 -13.80 16 19 C -0.23 -5.73 10.27 -15.06 -0.15 -5.89 16 20 H 0.08 1.89 7.83 -52.48 -0.41 1.48 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 22 N -0.92 -24.80 10.09 55.49 0.56 -24.24 16 23 Si 0.92 20.59 29.55 -169.99 -5.02 15.57 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.13 2.29 6.01 -3.06 -0.02 2.27 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 31 H 0.11 1.93 5.84 -51.93 -0.30 1.62 16 32 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 33 H 0.16 1.80 8.04 -52.49 -0.42 1.38 16 34 H 0.15 1.63 8.04 -52.48 -0.42 1.21 16 35 H 0.40 2.62 7.93 -40.82 -0.32 2.30 16 36 H 0.41 2.64 8.93 -40.82 -0.36 2.28 16 37 H 0.07 1.09 6.37 -51.93 -0.33 0.75 16 38 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 39 H 0.11 2.72 5.87 -51.93 -0.31 2.42 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.78 4.47 -51.93 -0.23 0.55 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -30.99 353.01 -8.09 -39.08 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.25 Total: 6.14 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.67 Total: 4.88 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.10 Total: -54.37 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.54 Total: 1.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.99 -8.09 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033990780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.184 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds