Wall clock time and date at job start Tue Mar 31 2020 20:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47147 * 2 1 4 4 C 1.34233 * 117.00010 * 180.02562 * 3 2 1 5 5 O 1.20816 * 119.99912 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99802 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.46886 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47309 * 54.99816 * 7 6 4 9 9 C 1.50698 * 109.47297 * 174.99877 * 7 6 4 10 10 H 1.07996 * 120.00083 * 240.00003 * 9 7 6 11 11 C 1.37880 * 119.99766 * 59.99579 * 9 7 6 12 12 N 1.31518 * 120.00030 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99703 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47497 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47291 * 120.00634 * 13 11 9 16 16 H 1.48502 * 109.46991 * 239.99957 * 13 11 9 17 17 O 1.42900 * 109.46822 * 294.99846 * 7 6 4 18 18 C 1.42906 * 114.00069 * 150.00045 * 17 7 6 19 19 C 1.50696 * 109.47412 * 179.97438 * 18 17 7 20 20 N 1.31684 * 119.71873 * 96.66431 * 19 18 17 21 21 C 1.31938 * 121.88635 * 179.97438 * 20 19 18 22 22 C 1.38363 * 121.08745 * 0.02562 * 21 20 19 23 23 C 1.38341 * 119.30840 * 0.25499 * 22 21 20 24 24 C 1.39572 * 119.72402 * 276.64585 * 19 18 17 25 25 C 1.47726 * 120.56039 * 0.02562 * 24 19 18 26 26 O 1.21474 * 120.00331 * 5.66902 * 25 24 19 27 27 O 1.34716 * 119.99896 * 185.66839 * 25 24 19 28 28 C 1.45196 * 116.99659 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47203 * 59.99970 * 1 2 3 30 30 H 1.08996 * 109.47208 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46981 * 299.99964 * 1 2 3 32 32 H 1.09001 * 109.46735 * 240.00463 * 2 1 3 33 33 H 1.09000 * 109.47203 * 120.00030 * 2 1 3 34 34 H 1.08997 * 109.47085 * 60.00090 * 6 4 3 35 35 H 1.08995 * 109.47171 * 299.99733 * 6 4 3 36 36 H 0.97006 * 119.99739 * 179.97438 * 12 11 9 37 37 H 1.09007 * 109.47122 * 59.99875 * 18 17 7 38 38 H 1.09002 * 109.47280 * 300.00135 * 18 17 7 39 39 H 1.07996 * 119.45279 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.34424 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.85629 * 179.72610 * 23 22 21 42 42 H 1.08997 * 109.47076 * 299.99633 * 28 27 25 43 43 H 1.08999 * 109.47559 * 60.00491 * 28 27 25 44 44 H 1.09006 * 109.46833 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0014 8 1 5.7799 2.2503 -0.8439 9 6 6.0243 4.2446 -0.1247 10 1 6.6583 4.4936 -0.9628 11 6 5.7414 5.1959 0.8324 12 7 4.9697 4.8925 1.8532 13 14 6.4544 6.9156 0.6791 14 1 7.2830 7.0003 -0.5502 15 1 5.3494 7.9044 0.5998 16 1 7.2973 7.2096 1.8659 17 8 5.8955 2.2629 1.2188 18 6 7.1186 1.5340 1.0965 19 6 7.4939 0.9540 2.4358 20 7 7.1794 -0.2931 2.7183 21 6 7.4874 -0.8442 3.8769 22 6 8.1590 -0.1287 4.8523 23 6 8.5072 1.1876 4.6076 24 6 8.1722 1.7430 3.3661 25 6 8.5248 3.1421 3.0493 26 8 8.1358 3.6474 2.0153 27 8 9.2779 3.8577 3.9070 28 6 9.5850 5.2261 3.5309 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.5852 3.4690 0.8905 35 1 3.5844 3.4700 -0.8895 36 1 4.7710 5.5617 2.5267 37 1 7.9085 2.2041 0.7569 38 1 6.9906 0.7279 0.3741 39 1 7.2107 -1.8707 4.0669 40 1 8.4047 -0.5916 5.7966 41 1 9.0279 1.7706 5.3529 42 1 10.1316 5.2298 2.5879 43 1 8.6581 5.7881 3.4159 44 1 10.1962 5.6876 4.3066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223437607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:45 Heat of formation + Delta-G solvation = -164.271107 kcal Electronic energy + Delta-G solvation = -30650.453217 eV Core-core repulsion = 26341.438829 eV Total energy + Delta-G solvation = -4309.014388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43931 -39.55653 -39.06526 -36.72888 -35.86851 -35.40630 -33.00133 -32.47663 -31.47825 -31.41678 -29.76773 -27.59446 -26.07575 -25.66444 -24.19090 -23.04424 -21.71929 -21.43056 -20.74797 -19.64275 -17.51514 -16.99842 -16.70665 -16.34361 -16.11905 -15.98279 -15.87326 -15.63218 -15.30577 -14.88302 -14.35643 -14.19591 -13.74918 -13.47953 -13.32353 -13.29305 -12.90134 -12.71214 -12.56240 -12.45304 -12.13682 -11.99883 -11.66000 -11.60280 -11.28289 -11.05664 -10.99100 -10.84270 -10.61815 -10.44550 -10.22336 -9.98012 -9.88223 -9.70734 -9.53210 -9.41087 -9.15595 -9.04642 -8.76648 -8.42512 -7.66835 -5.90311 -4.03464 0.88753 1.41174 3.06788 3.14363 3.24057 3.29792 3.37615 3.43627 3.51179 4.03135 4.49521 4.54938 4.92605 4.94759 5.05179 5.18593 5.25638 5.26230 5.35626 5.44959 5.49390 5.55055 5.62198 5.65932 5.67450 5.90643 5.94869 5.99722 6.06936 6.13086 6.19433 6.22401 6.56238 6.61625 6.66534 6.74856 6.86363 7.03382 7.09152 7.20957 7.62346 7.96292 8.22454 8.29909 8.39938 8.71840 8.79184 9.15008 9.70681 11.12634 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.008978 B = 0.005496 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.062355 B = 5093.093552 C = 7647.003516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.370 6.370 4 C 0.455 3.545 5 O -0.510 6.510 6 C -0.101 4.101 7 C 0.236 3.764 8 H 0.012 0.988 9 C -0.536 4.536 10 H 0.056 0.944 11 C 0.102 3.898 12 N -0.860 5.860 13 Si 0.883 3.117 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.286 1.286 17 O -0.346 6.346 18 C 0.115 3.885 19 C 0.210 3.790 20 N -0.474 5.474 21 C 0.122 3.878 22 C -0.197 4.197 23 C -0.031 4.031 24 C -0.150 4.150 25 C 0.480 3.520 26 O -0.415 6.415 27 O -0.370 6.370 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -6.760 5.120 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.288 6.288 4 C 0.300 3.700 5 O -0.397 6.397 6 C -0.138 4.138 7 C 0.180 3.820 8 H 0.030 0.970 9 C -0.573 4.573 10 H 0.074 0.926 11 C -0.104 4.104 12 N -0.497 5.497 13 Si 0.712 3.288 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.212 1.212 17 O -0.265 6.265 18 C 0.037 3.963 19 C 0.072 3.928 20 N -0.183 5.183 21 C -0.036 4.036 22 C -0.217 4.217 23 C -0.057 4.057 24 C -0.153 4.153 25 C 0.320 3.680 26 O -0.297 6.297 27 O -0.288 6.288 28 C -0.053 4.053 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.174 0.826 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.223 -7.275 4.461 8.819 hybrid contribution 0.949 1.400 0.639 1.808 sum 3.172 -5.875 5.100 8.402 Atomic orbital electron populations 1.21771 0.93528 1.02162 1.03219 1.22802 0.94652 0.82142 1.01890 1.86588 1.26610 1.30672 1.84975 1.25034 0.79223 0.94558 0.71228 1.90584 1.60061 1.43560 1.45519 1.21900 0.97864 0.87610 1.06443 1.19303 0.87649 0.91990 0.83066 0.96998 1.21324 1.31407 0.95377 1.09184 0.92556 1.24770 0.93507 0.97716 0.94357 1.69902 1.35663 1.33209 1.10911 0.86727 0.78984 0.85176 0.77950 1.19905 1.21439 1.21196 1.88012 1.35252 1.68314 1.34876 1.21035 0.92347 0.94179 0.88712 1.21591 0.87691 0.87961 0.95593 1.67736 1.18162 1.11935 1.20489 1.23015 0.92070 0.99896 0.88574 1.22051 1.02880 0.95269 1.01454 1.21843 0.93959 0.94712 0.95136 1.20015 1.05672 0.92701 0.96913 1.20917 0.77387 0.86610 0.83066 1.91157 1.46085 1.69307 1.23138 1.86435 1.66085 1.26673 1.49637 1.23169 1.01603 0.79329 1.01221 0.91791 0.90989 0.91700 0.92040 0.91882 0.84589 0.88925 0.93388 0.90376 0.94052 0.82554 0.84468 0.83840 0.92155 0.91673 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.29 37.16 0.38 -1.39 16 2 C 0.06 0.95 6.19 37.16 0.23 1.18 16 3 O -0.37 -7.35 10.22 -39.27 -0.40 -7.75 16 4 C 0.46 10.35 7.84 36.01 0.28 10.63 16 5 O -0.51 -12.55 15.17 -24.05 -0.36 -12.92 16 6 C -0.10 -2.40 5.22 -27.88 -0.15 -2.55 16 7 C 0.24 6.10 1.82 -27.88 -0.05 6.05 16 8 H 0.01 0.31 7.60 -51.93 -0.39 -0.08 16 9 C -0.54 -14.44 8.19 -34.44 -0.28 -14.72 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.10 2.72 4.65 -17.82 -0.08 2.64 16 12 N -0.86 -23.69 10.93 55.43 0.61 -23.08 16 13 Si 0.88 21.03 29.54 -169.99 -5.02 16.00 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 O -0.35 -9.14 8.05 -60.47 -0.49 -9.63 16 18 C 0.12 2.71 4.99 36.00 0.18 2.89 16 19 C 0.21 4.40 6.45 -82.16 -0.53 3.87 16 20 N -0.47 -9.17 10.26 -9.13 -0.09 -9.26 16 21 C 0.12 1.78 11.17 -17.46 -0.20 1.58 16 22 C -0.20 -2.49 10.10 -39.50 -0.40 -2.89 16 23 C -0.03 -0.45 9.74 -38.86 -0.38 -0.83 16 24 C -0.15 -2.84 5.89 -104.84 -0.62 -3.46 16 25 C 0.48 9.75 7.84 34.61 0.27 10.02 16 26 O -0.42 -9.82 11.41 -24.63 -0.28 -10.10 16 27 O -0.37 -6.39 9.91 -40.54 -0.40 -6.79 16 28 C 0.04 0.62 10.56 101.05 1.07 1.68 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.14 3.54 6.22 -51.93 -0.32 3.22 16 35 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.08 1.88 5.84 -51.93 -0.30 1.58 16 38 H 0.04 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.14 1.75 7.72 -52.48 -0.41 1.34 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -33.19 378.70 -7.05 -40.24 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.04 Total: 2.88 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -0.27 Total: 14.71 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.51 Total: -32.34 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.94 Total: -47.19 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.19 -7.05 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223437607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.034 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds