Wall clock time and date at job start Tue Mar 31 2020 20:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45208 * 109.47272 * 2 1 4 4 C 1.34796 * 117.00123 * 180.02562 * 3 2 1 5 5 O 1.21553 * 119.99834 * 359.97438 * 4 3 2 6 6 C 1.47107 * 120.00036 * 179.97438 * 4 3 2 7 7 N 1.33609 * 123.15535 * 359.97438 * 6 4 3 8 8 C 1.28625 * 115.76927 * 180.02562 * 7 6 4 9 9 C 1.50695 * 124.70488 * 179.73464 * 8 7 6 10 10 N 1.46900 * 109.47222 * 90.03100 * 9 8 7 11 11 C 1.46903 * 111.00138 * 190.00018 * 10 9 8 12 12 C 1.50697 * 109.47327 * 169.23573 * 11 10 9 13 13 H 1.08002 * 119.99622 * 354.97213 * 12 11 10 14 14 C 1.37875 * 120.00229 * 174.97507 * 12 11 10 15 15 N 1.31519 * 119.99359 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00168 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46940 * 89.99849 * 16 14 12 18 18 H 1.48506 * 109.46921 * 209.99526 * 16 14 12 19 19 H 1.48496 * 109.47212 * 329.99866 * 16 14 12 20 20 C 1.46896 * 111.00135 * 66.03856 * 10 9 8 21 21 C 1.53000 * 109.46939 * 62.10919 * 20 10 9 22 22 C 1.47201 * 109.47108 * 179.97438 * 21 20 10 23 23 N 9.34632 * 154.56716 * 219.74122 * 3 1 2 24 24 S 1.70767 * 110.58355 * 0.02562 * 8 7 6 25 25 C 1.35289 * 123.15693 * 180.02562 * 6 4 3 26 26 C 1.50701 * 125.59074 * 359.96410 * 25 6 4 27 27 H 1.08996 * 109.47334 * 59.99704 * 1 2 3 28 28 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46564 * 299.99726 * 1 2 3 30 30 H 1.08999 * 109.47241 * 240.00593 * 2 1 3 31 31 H 1.08996 * 109.47334 * 120.00296 * 2 1 3 32 32 H 1.09006 * 109.46827 * 210.02486 * 9 8 7 33 33 H 1.09001 * 109.47497 * 330.02272 * 9 8 7 34 34 H 1.08999 * 109.46618 * 289.23977 * 11 10 9 35 35 H 1.09001 * 109.46739 * 49.23291 * 11 10 9 36 36 H 0.97007 * 119.99454 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.46648 * 182.09812 * 20 10 9 38 38 H 1.08995 * 109.47407 * 302.10046 * 20 10 9 39 39 H 1.09009 * 109.46818 * 299.94870 * 21 20 10 40 40 H 1.08995 * 109.47648 * 59.95005 * 21 20 10 41 41 H 1.08996 * 109.47001 * 89.99854 * 26 25 6 42 42 H 1.09003 * 109.47226 * 210.00387 * 26 25 6 43 43 H 1.09002 * 109.46998 * 329.99828 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3504 1.5456 -0.0005 5 8 4.0908 0.5816 -0.0005 6 6 3.9127 2.9050 -0.0011 7 7 3.1584 4.0078 -0.0017 8 6 3.7987 5.1233 -0.0027 9 6 3.1515 6.4842 -0.0092 10 7 2.9367 6.9309 1.3736 11 6 2.0992 8.1371 1.4132 12 6 1.6823 8.4129 2.8348 13 1 1.9383 7.7144 3.6178 14 6 0.9740 9.5568 3.1360 15 7 0.6628 10.4076 2.1826 16 14 0.4579 9.8990 4.8984 17 1 1.5220 10.6756 5.5839 18 1 -0.8050 10.6803 4.9014 19 1 0.2465 8.6133 5.6107 20 6 4.2164 7.1557 2.0590 21 6 4.9890 8.2666 1.3451 22 6 6.2711 8.4924 2.0322 23 7 7.2597 8.6665 2.5661 24 16 5.4841 4.8481 -0.0038 25 6 5.2421 3.1558 -0.0022 26 6 6.3312 2.1142 -0.0022 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8009 7.1929 -0.5232 33 1 2.1934 6.4284 -0.5261 34 1 2.6659 8.9855 1.0296 35 1 1.2127 7.9842 0.7977 36 1 0.1641 11.2123 2.3945 37 1 4.0286 7.4497 3.0918 38 1 4.8031 6.2372 2.0436 39 1 5.1774 7.9724 0.3125 40 1 4.4019 9.1849 1.3598 41 1 6.5931 1.8623 -1.0298 42 1 7.2093 2.5066 0.5109 43 1 5.9790 1.2203 0.5126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237242023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:27 Heat of formation + Delta-G solvation = -11.369275 kcal Electronic energy + Delta-G solvation = -26362.032004 eV Core-core repulsion = 22534.693560 eV Total energy + Delta-G solvation = -3827.338445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87677 -39.42050 -37.96635 -36.73134 -36.00943 -33.15716 -32.58095 -31.89323 -30.72706 -29.21516 -27.18928 -25.64685 -24.82197 -23.99634 -22.95384 -21.68525 -20.31578 -19.33597 -18.78381 -17.57197 -16.95184 -16.75444 -16.41988 -16.37026 -15.70707 -15.01537 -14.88244 -14.48393 -14.28473 -13.94099 -13.76554 -13.71680 -13.44380 -13.34008 -13.04566 -12.83961 -12.70880 -12.37248 -12.18724 -12.08801 -12.06832 -11.89104 -11.72963 -11.68885 -11.38921 -11.21258 -10.82872 -10.71950 -10.66136 -10.51807 -10.44540 -10.07358 -9.68550 -9.43771 -9.33353 -8.95383 -8.53824 -7.57166 -6.13772 -4.15322 0.33537 1.06482 1.48688 1.71244 2.63046 2.99185 3.02628 3.06881 3.27665 3.35199 3.39356 3.93820 4.19814 4.36547 4.57573 4.76050 4.77269 4.77602 4.82701 4.88781 5.07550 5.20673 5.23320 5.29558 5.32824 5.38732 5.51493 5.57119 5.62147 5.66394 5.74593 5.78428 5.91418 5.95829 6.09577 6.31211 6.44601 6.99548 7.07616 7.36537 7.62074 7.74348 7.76538 7.85013 7.95263 8.31139 8.92024 9.50139 10.96434 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.003524 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.026278 B = 7942.734652 C =10039.140490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.332 6.332 4 C 0.553 3.447 5 O -0.506 6.506 6 C 0.010 3.990 7 N -0.407 5.407 8 C 0.055 3.945 9 C 0.119 3.881 10 N -0.517 5.517 11 C 0.188 3.812 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.063 3.937 21 C -0.076 4.076 22 C 0.223 3.777 23 N -0.454 5.454 24 S 0.205 5.795 25 C -0.187 4.187 26 C -0.087 4.087 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.009 0.991 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -15.474 -8.648 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.247 6.247 4 C 0.396 3.604 5 O -0.396 6.396 6 C -0.123 4.123 7 N -0.120 5.120 8 C -0.227 4.227 9 C -0.013 4.013 10 N -0.240 5.240 11 C 0.064 3.936 12 C -0.549 4.549 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.068 4.068 21 C -0.118 4.118 22 C -0.095 4.095 23 N -0.132 5.132 24 S 0.464 5.536 25 C -0.311 4.311 26 C -0.146 4.146 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.027 0.973 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.918 -15.074 -7.645 18.665 hybrid contribution -0.797 -0.127 0.317 0.867 sum 7.121 -15.201 -7.328 18.316 Atomic orbital electron populations 1.21801 0.92356 1.02782 1.04061 1.23082 0.95703 0.80027 1.02425 1.86735 1.22817 1.31904 1.83287 1.19802 0.80924 0.87435 0.72280 1.90800 1.60388 1.41334 1.47053 1.19132 0.88650 0.91798 1.12739 1.66967 1.36148 0.96429 1.12505 1.27209 0.93164 0.99076 1.03240 1.20812 1.00854 0.86025 0.93584 1.62382 1.13089 1.37577 1.10985 1.19923 0.91514 0.83522 0.98608 1.21084 1.35133 1.05571 0.93145 0.91665 1.24926 0.95898 0.95984 0.97373 1.69932 1.39700 1.11770 1.32096 0.86539 0.78045 0.78417 0.84734 1.20727 1.21235 1.19712 1.22236 0.89300 0.94449 1.00803 1.20244 0.87250 1.05509 0.98771 1.29183 0.94287 0.92608 0.93430 1.81196 1.12571 1.09658 1.09791 1.83017 1.09785 0.96195 1.64589 1.25586 0.98576 1.01359 1.05592 1.20551 0.93919 0.96413 1.03719 0.91289 0.90297 0.91118 0.91264 0.91185 0.92444 0.87302 0.97320 0.94604 0.92774 0.88126 0.92144 0.88669 0.85403 0.89927 0.90914 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.33 -4.72 10.16 -40.75 -0.41 -5.14 16 4 C 0.55 8.14 7.94 34.33 0.27 8.42 16 5 O -0.51 -7.43 13.90 -19.31 -0.27 -7.69 16 6 C 0.01 0.15 6.71 -84.55 -0.57 -0.42 16 7 N -0.41 -6.57 10.60 -8.53 -0.09 -6.66 16 8 C 0.05 0.78 6.13 -13.62 -0.08 0.70 16 9 C 0.12 1.72 5.33 -4.98 -0.03 1.69 16 10 N -0.52 -9.16 4.69 -237.52 -1.11 -10.27 16 11 C 0.19 4.06 4.52 -4.98 -0.02 4.04 16 12 C -0.51 -12.73 8.39 -34.44 -0.29 -13.01 16 13 H 0.07 1.65 7.36 -52.49 -0.39 1.26 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -24.24 13.29 55.43 0.74 -23.51 16 16 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.06 0.98 4.86 -3.83 -0.02 0.96 16 21 C -0.08 -1.03 5.05 -29.52 -0.15 -1.17 16 22 C 0.22 3.33 15.44 -20.73 -0.32 3.01 16 23 N -0.45 -7.74 18.54 42.19 0.78 -6.95 16 24 S 0.20 2.33 21.32 -107.50 -2.29 0.04 16 25 C -0.19 -2.33 6.40 -35.36 -0.23 -2.56 16 26 C -0.09 -0.87 9.65 36.01 0.35 -0.52 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 6.07 -51.93 -0.32 0.36 16 33 H 0.11 1.63 7.92 -51.93 -0.41 1.22 16 34 H 0.01 0.20 6.02 -51.93 -0.31 -0.12 16 35 H 0.04 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.10 1.78 6.97 -51.93 -0.36 1.42 16 38 H 0.06 0.87 5.92 -51.93 -0.31 0.56 16 39 H 0.10 1.02 6.32 -51.92 -0.33 0.70 16 40 H 0.13 1.92 6.30 -51.93 -0.33 1.59 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 1.13 6.00 -51.93 -0.31 0.82 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -30.25 377.80 -8.12 -38.37 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.57 Total: -1.92 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.57 Total: 2.59 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.32 Total: -47.39 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.68 Total: -12.83 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.29 Total: 0.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.25 -8.12 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237242023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.004 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds