Wall clock time and date at job start Tue Mar 31 2020 21:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00084 * 2 1 4 4 H 1.08000 * 120.00544 * 200.36428 * 3 2 1 5 5 C 1.38823 * 119.99763 * 20.37175 * 3 2 1 6 6 N 1.31620 * 119.99966 * 14.99070 * 5 3 2 7 7 Si 1.86798 * 119.99817 * 194.98892 * 5 3 2 8 8 H 1.48503 * 109.47108 * 85.00581 * 7 5 3 9 9 H 1.48503 * 109.47208 * 205.00240 * 7 5 3 10 10 H 1.48496 * 109.47513 * 325.00444 * 7 5 3 11 11 C 1.46491 * 120.00201 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47168 * 269.99935 * 11 2 1 13 13 O 1.42896 * 109.47621 * 64.99676 * 12 11 2 14 14 C 1.42902 * 114.00457 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47008 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47065 * 65.00076 * 15 14 13 17 17 C 1.34773 * 119.99939 * 179.97438 * 16 15 14 18 18 O 1.21728 * 119.99745 * 0.27983 * 17 16 15 19 19 C 1.46493 * 119.99946 * 179.97438 * 17 16 15 20 20 C 1.36119 * 125.70985 * 180.02562 * 19 17 16 21 21 C 1.42231 * 107.62303 * 180.02562 * 20 19 17 22 22 C 1.45592 * 140.77618 * 180.02562 * 21 20 19 23 23 C 1.31810 * 114.62981 * 179.97438 * 22 21 20 24 24 S 1.75349 * 111.24760 * 0.02562 * 23 22 21 25 25 C 1.38176 * 106.99449 * 359.97438 * 21 20 19 26 26 N 1.37459 * 108.16892 * 359.73948 * 25 21 20 27 27 H 0.97002 * 125.68270 * 180.26333 * 26 25 21 28 28 H 1.09000 * 109.46419 * 275.10019 * 1 2 3 29 29 H 1.09004 * 109.47391 * 35.09366 * 1 2 3 30 30 H 1.08999 * 109.47068 * 155.09781 * 1 2 3 31 31 H 0.96996 * 120.00232 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47471 * 149.99239 * 11 2 1 33 33 H 1.09006 * 109.47127 * 29.99756 * 11 2 1 34 34 H 1.09002 * 109.46986 * 304.99707 * 12 11 2 35 35 H 1.09005 * 109.47257 * 185.00134 * 12 11 2 36 36 H 1.08991 * 109.46784 * 59.99723 * 14 13 12 37 37 H 1.09002 * 109.46596 * 299.99646 * 14 13 12 38 38 H 1.08994 * 109.47236 * 304.99836 * 15 14 13 39 39 H 1.09000 * 109.46503 * 184.99581 * 15 14 13 40 40 H 0.97002 * 120.00259 * 359.97438 * 16 15 14 41 41 H 1.07999 * 126.18801 * 0.02562 * 20 19 17 42 42 H 1.07999 * 122.68744 * 359.95416 * 22 21 20 43 43 H 1.08003 * 124.37382 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2152 -0.3255 5 6 1.5207 2.3505 0.4185 6 7 0.3877 2.2835 1.0850 7 14 2.2824 4.0127 0.0359 8 1 1.8679 4.4462 -1.3226 9 1 1.8224 5.0099 1.0355 10 1 3.7623 3.9035 0.0905 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4417 13 8 1.2062 -1.9943 2.0806 14 6 1.3326 -2.4178 3.4396 15 6 -0.0565 -2.6911 4.0198 16 7 -0.6656 -3.8227 3.3163 17 6 -1.8979 -4.2459 3.6607 18 8 -2.5069 -3.6848 4.5529 19 6 -2.5072 -5.3770 2.9569 20 6 -3.7394 -5.8983 3.2076 21 6 -3.9413 -6.9794 2.3058 22 6 -4.9344 -7.9841 1.9537 23 6 -4.5769 -8.7902 0.9740 24 16 -2.9747 -8.3969 0.3801 25 6 -2.8033 -7.0742 1.5278 26 7 -1.9301 -6.0891 1.9237 27 1 -1.0535 -5.9236 1.5429 28 1 -0.3632 0.0914 1.0236 29 1 -0.3634 0.8409 -0.5908 30 1 -0.3633 -0.9321 -0.4327 31 1 -0.0517 3.0972 1.3777 32 1 3.1499 -1.1381 -0.5144 33 1 1.6084 -2.0281 -0.5147 34 1 2.9643 -0.9138 1.9811 35 1 3.0734 -2.6069 1.4426 36 1 1.8209 -1.6352 4.0200 37 1 1.9302 -3.3284 3.4822 38 1 -0.6821 -1.8072 3.8965 39 1 0.0329 -2.9280 5.0800 40 1 -0.1820 -4.2673 2.6026 41 1 -4.4375 -5.5533 3.9560 42 1 -5.8876 -8.0628 2.4553 43 1 -5.1915 -9.5896 0.5872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283398607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:29 Heat of formation + Delta-G solvation = 17.658018 kcal Electronic energy + Delta-G solvation = -26032.181946 eV Core-core repulsion = 22206.102219 eV Total energy + Delta-G solvation = -3826.079727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.52796 -39.30194 -37.68641 -35.60843 -35.50321 -34.52691 -31.53152 -30.70682 -30.10268 -28.56351 -27.66613 -25.73154 -23.85713 -23.18625 -23.01934 -21.87183 -20.41798 -20.33355 -19.71350 -19.41027 -16.99082 -16.91122 -16.33652 -16.17685 -15.46105 -15.30296 -15.22674 -14.84675 -14.62223 -14.47017 -14.20979 -13.81740 -13.64009 -13.38614 -13.23517 -12.94042 -12.65642 -12.20558 -12.11578 -11.89790 -11.62530 -11.45880 -11.09362 -10.95451 -10.90881 -10.78480 -10.54349 -10.26068 -10.10707 -9.94405 -9.80841 -9.74690 -9.19085 -9.10462 -8.54312 -8.49776 -7.92850 -6.72597 -5.67241 -3.11727 0.79979 1.06288 1.17237 1.71357 2.64571 2.83485 2.99592 3.28274 3.39364 3.45451 3.46838 4.06623 4.40499 4.52952 4.61632 4.76368 5.04129 5.17058 5.19974 5.33753 5.42605 5.47585 5.51042 5.59142 5.64234 5.83767 5.91128 5.94371 6.02569 6.13439 6.16653 6.17454 6.28950 6.45608 6.48721 6.70914 6.86383 6.90578 7.35417 7.48358 7.70188 7.80821 7.94516 8.02766 8.42830 9.27969 9.92345 10.41750 11.36823 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.002272 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.004382 B =12322.617754 C =12787.309605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.259 4.259 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.901 5.901 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.153 3.847 12 C 0.042 3.958 13 O -0.368 6.368 14 C 0.049 3.951 15 C 0.125 3.875 16 N -0.717 5.717 17 C 0.586 3.414 18 O -0.525 6.525 19 C -0.003 4.003 20 C -0.070 4.070 21 C -0.164 4.164 22 C -0.069 4.069 23 C -0.224 4.224 24 S 0.132 5.868 25 C -0.008 4.008 26 N -0.524 5.524 27 H 0.421 0.579 28 H 0.033 0.967 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.251 0.749 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.397 0.603 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -23.945 2.380 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.318 5.318 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.545 5.545 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.025 3.975 12 C -0.038 4.038 13 O -0.287 6.287 14 C -0.028 4.028 15 C 0.002 3.998 16 N -0.368 5.368 17 C 0.372 3.628 18 O -0.401 6.401 19 C -0.116 4.116 20 C -0.097 4.097 21 C -0.176 4.176 22 C -0.099 4.099 23 C -0.357 4.357 24 S 0.385 5.615 25 C -0.237 4.237 26 N -0.127 5.127 27 H 0.260 0.740 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.231 0.769 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.679 -23.845 1.885 24.373 hybrid contribution 0.507 1.430 0.583 1.626 sum -4.172 -22.415 2.468 22.933 Atomic orbital electron populations 1.20691 0.82131 0.94690 0.99531 1.43901 1.02132 1.00228 1.85558 1.19190 0.96966 0.85152 1.37539 0.91487 1.24977 0.97899 0.98250 0.98572 1.70111 1.18666 1.26632 1.39141 0.86320 0.78516 0.84294 0.77645 1.21511 1.21806 1.20697 1.20882 0.96436 0.88903 0.91312 1.23546 0.84976 0.96930 0.98311 1.88011 1.30600 1.87337 1.22729 1.22620 0.95425 0.98572 0.86220 1.21479 0.93650 0.89254 0.95435 1.45794 1.17278 1.34754 1.38935 1.16928 0.81148 0.81901 0.82777 1.90881 1.62002 1.56452 1.30767 1.20087 0.96293 0.99355 0.95902 1.20744 0.94818 0.94550 0.99633 1.19393 0.94607 1.01711 1.01933 1.20334 0.99056 0.93381 0.97159 1.24870 0.99728 1.06936 1.04197 1.83965 1.15367 1.25928 1.36220 1.23573 0.95478 0.99666 1.05017 1.41427 1.16613 1.25244 1.29452 0.74021 0.94840 0.94549 0.98828 0.93823 0.92314 0.93951 0.93189 0.95750 0.91744 0.93836 0.89611 0.90078 0.76889 0.82483 0.83721 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.48 8.62 59.85 0.52 4.99 16 2 N -0.60 -15.07 2.89 -181.12 -0.52 -15.60 16 3 C -0.26 -7.11 9.68 -15.06 -0.15 -7.26 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 5 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 6 N -0.90 -26.70 10.67 55.49 0.59 -26.11 16 7 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.15 3.06 6.11 -4.05 -0.02 3.03 16 12 C 0.04 0.75 6.28 37.16 0.23 0.98 16 13 O -0.37 -6.59 9.84 -35.23 -0.35 -6.93 16 14 C 0.05 0.68 6.07 37.16 0.23 0.90 16 15 C 0.12 1.70 6.06 -4.04 -0.02 1.67 16 16 N -0.72 -8.98 5.50 -61.67 -0.34 -9.32 16 17 C 0.59 8.29 7.78 -12.94 -0.10 8.19 16 18 O -0.52 -9.16 16.85 5.16 0.09 -9.07 16 19 C 0.00 -0.04 6.97 -82.47 -0.57 -0.62 16 20 C -0.07 -0.84 10.59 -38.81 -0.41 -1.25 16 21 C -0.16 -1.83 6.80 -105.46 -0.72 -2.55 16 22 C -0.07 -0.60 10.42 -38.55 -0.40 -1.00 16 23 C -0.22 -1.66 11.03 28.84 0.32 -1.34 16 24 S 0.13 1.08 23.24 -107.50 -2.50 -1.42 16 25 C -0.01 -0.09 8.41 -15.05 -0.13 -0.22 16 26 N -0.52 -5.33 6.08 -7.94 -0.05 -5.38 16 27 H 0.42 3.22 8.14 -40.82 -0.33 2.89 16 28 H 0.03 0.94 7.40 -51.93 -0.38 0.56 16 29 H 0.04 1.00 7.21 -51.93 -0.37 0.63 16 30 H -0.01 -0.16 7.83 -51.93 -0.41 -0.57 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.04 0.78 7.86 -51.93 -0.41 0.38 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.40 4.13 7.54 -40.82 -0.31 3.82 16 41 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -34.15 379.07 -9.70 -43.85 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.98 Total: 1.81 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.32 Total: 5.50 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.32 Total: -56.40 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.26 Total: -16.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.50 Total: -1.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.15 -9.70 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283398607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.505 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds