Wall clock time and date at job start Tue Mar 31 2020 21:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00084 * 2 1 4 4 H 1.08000 * 120.00544 * 200.36428 * 3 2 1 5 5 C 1.38823 * 119.99763 * 20.37175 * 3 2 1 6 6 N 1.31620 * 119.99966 * 14.99070 * 5 3 2 7 7 Si 1.86798 * 119.99817 * 194.98892 * 5 3 2 8 8 H 1.48503 * 109.47108 * 85.00581 * 7 5 3 9 9 H 1.48503 * 109.47208 * 205.00240 * 7 5 3 10 10 H 1.48496 * 109.47513 * 325.00444 * 7 5 3 11 11 C 1.46491 * 120.00201 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47168 * 269.99935 * 11 2 1 13 13 O 1.42896 * 109.47621 * 64.99676 * 12 11 2 14 14 C 1.42902 * 114.00457 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47008 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47065 * 65.00076 * 15 14 13 17 17 C 1.34773 * 119.99939 * 179.97438 * 16 15 14 18 18 O 1.21728 * 119.99745 * 0.27983 * 17 16 15 19 19 C 1.46493 * 119.99946 * 179.97438 * 17 16 15 20 20 C 1.36119 * 125.70985 * 180.02562 * 19 17 16 21 21 C 1.42231 * 107.62303 * 180.02562 * 20 19 17 22 22 C 1.45592 * 140.77618 * 180.02562 * 21 20 19 23 23 C 1.31810 * 114.62981 * 179.97438 * 22 21 20 24 24 S 1.75349 * 111.24760 * 0.02562 * 23 22 21 25 25 C 1.38176 * 106.99449 * 359.97438 * 21 20 19 26 26 N 1.37459 * 108.16892 * 359.73948 * 25 21 20 27 27 H 0.97002 * 125.68270 * 180.26333 * 26 25 21 28 28 H 1.09000 * 109.46419 * 275.10019 * 1 2 3 29 29 H 1.09004 * 109.47391 * 35.09366 * 1 2 3 30 30 H 1.08999 * 109.47068 * 155.09781 * 1 2 3 31 31 H 0.96996 * 120.00232 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47471 * 149.99239 * 11 2 1 33 33 H 1.09006 * 109.47127 * 29.99756 * 11 2 1 34 34 H 1.09002 * 109.46986 * 304.99707 * 12 11 2 35 35 H 1.09005 * 109.47257 * 185.00134 * 12 11 2 36 36 H 1.08991 * 109.46784 * 59.99723 * 14 13 12 37 37 H 1.09002 * 109.46596 * 299.99646 * 14 13 12 38 38 H 1.08994 * 109.47236 * 304.99836 * 15 14 13 39 39 H 1.09000 * 109.46503 * 184.99581 * 15 14 13 40 40 H 0.97002 * 120.00259 * 359.97438 * 16 15 14 41 41 H 1.07999 * 126.18801 * 0.02562 * 20 19 17 42 42 H 1.07999 * 122.68744 * 359.95416 * 22 21 20 43 43 H 1.08003 * 124.37382 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2152 -0.3255 5 6 1.5207 2.3505 0.4185 6 7 0.3877 2.2835 1.0850 7 14 2.2824 4.0127 0.0359 8 1 1.8679 4.4462 -1.3226 9 1 1.8224 5.0099 1.0355 10 1 3.7623 3.9035 0.0905 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4417 13 8 1.2062 -1.9943 2.0806 14 6 1.3326 -2.4178 3.4396 15 6 -0.0565 -2.6911 4.0198 16 7 -0.6656 -3.8227 3.3163 17 6 -1.8979 -4.2459 3.6607 18 8 -2.5069 -3.6848 4.5529 19 6 -2.5072 -5.3770 2.9569 20 6 -3.7394 -5.8983 3.2076 21 6 -3.9413 -6.9794 2.3058 22 6 -4.9344 -7.9841 1.9537 23 6 -4.5769 -8.7902 0.9740 24 16 -2.9747 -8.3969 0.3801 25 6 -2.8033 -7.0742 1.5278 26 7 -1.9301 -6.0891 1.9237 27 1 -1.0535 -5.9236 1.5429 28 1 -0.3632 0.0914 1.0236 29 1 -0.3634 0.8409 -0.5908 30 1 -0.3633 -0.9321 -0.4327 31 1 -0.0517 3.0972 1.3777 32 1 3.1499 -1.1381 -0.5144 33 1 1.6084 -2.0281 -0.5147 34 1 2.9643 -0.9138 1.9811 35 1 3.0734 -2.6069 1.4426 36 1 1.8209 -1.6352 4.0200 37 1 1.9302 -3.3284 3.4822 38 1 -0.6821 -1.8072 3.8965 39 1 0.0329 -2.9280 5.0800 40 1 -0.1820 -4.2673 2.6026 41 1 -4.4375 -5.5533 3.9560 42 1 -5.8876 -8.0628 2.4553 43 1 -5.1915 -9.5896 0.5872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283398607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:28 Heat of formation + Delta-G solvation = -5.938414 kcal Electronic energy + Delta-G solvation = -26033.205164 eV Core-core repulsion = 22206.102219 eV Total energy + Delta-G solvation = -3827.102945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.38775 -40.39558 -39.05167 -37.25584 -36.33586 -35.80663 -33.43726 -31.56957 -31.35436 -29.87301 -28.86022 -27.83236 -24.96895 -24.70768 -23.90262 -22.92688 -22.16409 -21.28017 -20.66133 -20.14887 -18.79178 -17.88821 -17.67321 -17.43995 -16.91677 -16.51804 -16.27678 -15.98217 -15.53392 -15.50223 -15.45401 -15.25058 -15.13006 -14.79901 -14.50463 -14.10371 -13.84832 -13.73599 -13.18726 -13.05906 -12.80509 -12.73030 -12.61225 -12.55922 -12.51923 -12.35701 -12.03042 -11.80628 -11.75049 -11.70852 -11.42340 -10.62431 -10.58897 -10.41940 -10.29697 -9.29329 -8.77784 -8.64940 -7.79317 -5.25298 0.08200 0.17194 0.42935 1.07701 1.45552 1.47807 1.55403 1.79216 1.91274 2.11068 2.29809 2.51933 2.82640 3.33242 3.58663 3.74354 3.81823 3.91541 4.01968 4.13445 4.40969 4.43509 4.50413 4.56323 4.59914 4.63569 4.66148 4.77023 4.84102 4.90314 4.97981 5.10534 5.17699 5.19326 5.24470 5.34779 5.42596 5.63640 5.65023 5.79897 6.10692 6.33017 6.36352 6.42993 6.95940 7.16919 7.91175 8.35906 9.23750 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.002272 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.004382 B =12322.617754 C =12787.309605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.260 4.260 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.266 1.266 11 C 0.144 3.856 12 C 0.051 3.949 13 O -0.395 6.395 14 C 0.052 3.948 15 C 0.130 3.870 16 N -0.706 5.706 17 C 0.587 3.413 18 O -0.567 6.567 19 C -0.018 4.018 20 C -0.082 4.082 21 C -0.183 4.183 22 C -0.087 4.087 23 C -0.212 4.212 24 S 0.157 5.843 25 C -0.021 4.021 26 N -0.516 5.516 27 H 0.432 0.568 28 H 0.000 1.000 29 H 0.006 0.994 30 H 0.019 0.981 31 H 0.244 0.756 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.410 0.590 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -26.499 1.096 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.336 5.336 3 C -0.390 4.390 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.226 1.226 10 H -0.191 1.191 11 C 0.018 3.982 12 C -0.028 4.028 13 O -0.314 6.314 14 C -0.024 4.024 15 C 0.006 3.994 16 N -0.357 5.357 17 C 0.374 3.626 18 O -0.447 6.447 19 C -0.132 4.132 20 C -0.110 4.110 21 C -0.196 4.196 22 C -0.117 4.117 23 C -0.345 4.345 24 S 0.411 5.589 25 C -0.250 4.250 26 N -0.120 5.120 27 H 0.272 0.728 28 H 0.018 0.982 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.246 0.754 41 H 0.173 0.827 42 H 0.181 0.819 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.349 -26.449 0.563 26.666 hybrid contribution 0.107 2.047 0.918 2.245 sum -3.242 -24.402 1.480 24.661 Atomic orbital electron populations 1.20311 0.83010 0.94588 0.97101 1.44122 1.01996 1.01711 1.85762 1.19580 0.97258 0.86185 1.36017 0.90604 1.25766 0.98678 1.01717 0.99165 1.70298 1.20331 1.26795 1.40936 0.85293 0.78420 0.79931 0.76855 1.21436 1.22648 1.19069 1.21151 0.96811 0.87018 0.93202 1.23266 0.85289 0.98072 0.96123 1.87965 1.31029 1.87770 1.24684 1.22727 0.95637 0.99926 0.84153 1.21375 0.93111 0.88248 0.96643 1.45676 1.16919 1.34132 1.38942 1.17157 0.81167 0.81973 0.82284 1.90850 1.63072 1.57993 1.32735 1.19783 0.96715 0.99590 0.97086 1.20921 0.94935 0.95164 1.00028 1.19740 0.95857 1.02066 1.01893 1.20550 0.99640 0.93307 0.98203 1.25323 0.99391 1.06809 1.03013 1.83936 1.15776 1.24252 1.34969 1.24030 0.95322 1.00109 1.05579 1.41310 1.17015 1.24882 1.28833 0.72764 0.98168 0.97514 0.96235 0.94681 0.90852 0.92106 0.95959 0.91022 0.92316 0.89947 0.93367 0.88350 0.75425 0.82651 0.81858 0.78077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.20 8.62 127.77 1.10 11.30 16 2 N -0.61 -30.76 2.89 -726.94 -2.10 -32.86 16 3 C -0.26 -14.22 9.68 84.04 0.81 -13.41 16 4 H 0.08 3.94 7.86 -2.91 -0.02 3.91 16 5 C -0.06 -3.33 5.06 84.86 0.43 -2.90 16 6 N -0.94 -57.27 10.67 21.66 0.23 -57.04 16 7 Si 0.97 45.67 29.58 68.60 2.03 47.70 16 8 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 9 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 C 0.14 5.45 6.11 86.38 0.53 5.98 16 12 C 0.05 1.71 6.28 71.98 0.45 2.16 16 13 O -0.39 -13.66 9.84 -148.98 -1.47 -15.13 16 14 C 0.05 1.37 6.07 71.98 0.44 1.81 16 15 C 0.13 3.54 6.06 86.38 0.52 4.07 16 16 N -0.71 -17.48 5.50 -467.24 -2.57 -20.05 16 17 C 0.59 17.00 7.78 86.39 0.67 17.67 16 18 O -0.57 -20.75 16.85 -4.44 -0.07 -20.82 16 19 C -0.02 -0.46 6.97 39.81 0.28 -0.18 16 20 C -0.08 -2.04 10.59 22.77 0.24 -1.80 16 21 C -0.18 -3.96 6.80 -20.40 -0.14 -4.10 16 22 C -0.09 -1.35 10.42 23.39 0.24 -1.11 16 23 C -0.21 -2.53 11.03 67.05 0.74 -1.79 16 24 S 0.16 2.20 23.24 -56.49 -1.31 0.89 16 25 C -0.02 -0.42 8.41 83.80 0.70 0.28 16 26 N -0.52 -10.07 6.08 -179.04 -1.09 -11.15 16 27 H 0.43 6.01 8.14 -92.71 -0.75 5.26 16 28 H 0.00 0.00 7.40 -2.39 -0.02 -0.02 16 29 H 0.01 0.35 7.21 -2.39 -0.02 0.33 16 30 H 0.02 0.88 7.83 -2.39 -0.02 0.86 16 31 H 0.24 14.64 8.31 -92.71 -0.77 13.86 16 32 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 33 H 0.06 2.07 7.86 -2.38 -0.02 2.05 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.41 7.95 7.54 -92.71 -0.70 7.26 16 41 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -76.03 379.07 0.27 -75.76 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.40 Total: 14.71 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 7.02 Total: 18.00 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.53 Total: -121.10 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.54 Total: -35.95 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.89 kcal Total: -76.03 0.27 -75.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283398607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.822 kcal (2) G-P(sol) polarization free energy of solvation -76.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds