Wall clock time and date at job start Tue Mar 31 2020 19:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47078 * 2 1 4 4 C 1.47197 * 109.46906 * 240.00510 * 2 1 3 5 5 N 2.60803 * 109.47041 * 240.00216 * 2 1 3 6 6 C 1.50695 * 109.47188 * 120.00031 * 2 1 3 7 7 O 1.21288 * 119.99670 * 88.39792 * 6 2 1 8 8 N 1.34772 * 120.00439 * 268.39900 * 6 2 1 9 9 C 1.47164 * 120.70856 * 355.57036 * 8 6 2 10 10 C 1.54488 * 108.00907 * 132.63664 * 9 8 6 11 11 H 1.09002 * 112.34701 * 181.98837 * 10 9 8 12 12 C 1.54547 * 107.85073 * 306.76943 * 10 9 8 13 13 C 1.53728 * 104.95576 * 88.85882 * 12 10 9 14 14 C 1.54545 * 104.95623 * 359.97438 * 13 12 10 15 15 H 1.08993 * 112.68384 * 146.56370 * 14 13 12 16 16 C 1.47165 * 120.71206 * 175.54895 * 8 6 2 17 17 N 1.48307 * 104.35527 * 24.57838 * 14 13 12 18 18 C 1.34782 * 128.07980 * 139.07913 * 17 14 13 19 19 O 1.21280 * 119.99552 * 0.02562 * 18 17 14 20 20 C 1.50695 * 120.00160 * 180.27446 * 18 17 14 21 21 S 1.81002 * 109.47048 * 179.72614 * 20 18 17 22 22 C 1.76203 * 100.00010 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99746 * 0.02562 * 22 21 20 24 24 C 1.38801 * 119.99971 * 179.97438 * 22 21 20 25 25 N 1.31631 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46868 * 60.00687 * 26 24 22 28 28 H 1.48497 * 109.47059 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47252 * 300.00515 * 26 24 22 30 30 H 1.09001 * 109.47070 * 66.28021 * 1 2 3 31 31 H 1.08999 * 109.47032 * 186.27911 * 1 2 3 32 32 H 1.09005 * 109.46903 * 306.28170 * 1 2 3 33 33 H 1.09007 * 109.75037 * 252.37108 * 9 8 6 34 34 H 1.09000 * 109.75086 * 13.05324 * 9 8 6 35 35 H 1.09005 * 110.36171 * 207.57397 * 12 10 9 36 36 H 1.09005 * 110.36600 * 329.88717 * 12 10 9 37 37 H 1.08997 * 110.41996 * 241.06237 * 13 12 10 38 38 H 1.08999 * 110.21063 * 118.81803 * 13 12 10 39 39 H 1.09000 * 109.75135 * 107.63044 * 16 8 6 40 40 H 1.09000 * 109.78791 * 346.91762 * 16 8 6 41 41 H 1.09000 * 109.47580 * 299.72900 * 20 18 17 42 42 H 1.09007 * 109.46801 * 59.72967 * 20 18 17 43 43 H 0.96997 * 120.00121 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.2068 -1.9105 1.2090 8 7 2.2878 -0.0123 2.3546 9 6 2.1747 1.4549 2.3702 10 6 1.3642 1.8583 3.6220 11 1 1.2077 2.9351 3.6851 12 6 0.0390 1.0633 3.6047 13 6 0.3526 -0.2468 4.3453 14 6 1.8407 -0.1320 4.7462 15 1 2.0595 -0.6220 5.6949 16 6 2.6852 -0.7009 3.5930 17 7 2.0961 1.3280 4.7976 18 6 2.8193 2.0140 5.7048 19 8 3.3569 1.4277 6.6203 20 6 2.9553 3.5100 5.5848 21 16 3.9715 4.1346 6.9461 22 6 3.9643 5.8557 6.5686 23 1 3.4278 6.2165 5.7035 24 6 4.6472 6.7478 7.3837 25 7 5.3006 6.3081 8.4383 26 14 4.6402 8.5723 6.9831 27 1 3.2431 9.0756 6.9919 28 1 5.4372 9.3053 7.9992 29 1 5.2349 8.7864 5.6394 30 1 -0.3633 0.4134 -0.9409 31 1 -0.3633 -1.0215 0.1124 32 1 -0.3633 0.6082 0.8285 33 1 3.1686 1.9005 2.4134 34 1 1.6580 1.7941 1.4724 35 1 -0.7411 1.6150 4.1295 36 1 -0.2661 0.8567 2.5789 37 1 0.2027 -1.1017 3.6859 38 1 -0.2737 -0.3370 5.2328 39 1 3.7428 -0.5249 3.7892 40 1 2.5018 -1.7710 3.4953 41 1 3.4292 3.7567 4.6347 42 1 1.9676 3.9692 5.6283 43 1 5.7782 6.9315 9.0077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283980708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:01 Heat of formation + Delta-G solvation = -20.223061 kcal Electronic energy + Delta-G solvation = -27153.242343 eV Core-core repulsion = 23325.519969 eV Total energy + Delta-G solvation = -3827.722374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64299 -39.72257 -37.92718 -36.93457 -34.81237 -33.74633 -32.49109 -32.22833 -31.56436 -29.05829 -27.29305 -25.89290 -25.51781 -24.91121 -22.52520 -21.26226 -20.88996 -18.80295 -18.23338 -18.01939 -17.42904 -16.70413 -16.50895 -15.84766 -15.38176 -15.15853 -15.05220 -14.85863 -14.36004 -14.15983 -14.06225 -13.96007 -13.63332 -13.53342 -13.27487 -13.11255 -12.94131 -12.79056 -12.71971 -12.58508 -12.24891 -12.02129 -11.98220 -11.71583 -11.56113 -11.26049 -11.10223 -11.08974 -10.82684 -10.80920 -10.26280 -9.89258 -9.53611 -9.47567 -9.11864 -8.57639 -8.31608 -6.57851 -6.27513 -3.99196 1.91937 2.05460 2.37039 2.58638 2.78543 2.90559 3.18710 3.19217 3.24661 3.35970 3.47043 3.82230 4.08555 4.15046 4.23738 4.28154 4.32854 4.39734 4.52658 4.64447 4.79856 4.88315 4.91449 5.03317 5.07753 5.13119 5.22357 5.23028 5.30378 5.34356 5.45224 5.53092 5.54011 5.61884 5.71318 5.77037 5.83799 5.99133 6.01352 6.20127 6.80685 7.12051 7.52511 7.55933 7.58834 8.28396 8.41094 9.17598 10.79797 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.002720 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.659290 B =10290.574751 C =11002.926754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.015 4.015 3 H 0.137 0.863 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.527 3.473 7 O -0.527 6.527 8 N -0.598 5.598 9 C 0.086 3.914 10 C 0.117 3.883 11 H 0.117 0.883 12 C -0.128 4.128 13 C -0.126 4.126 14 C 0.122 3.878 15 H 0.115 0.885 16 C 0.105 3.895 17 N -0.625 5.625 18 C 0.555 3.445 19 O -0.510 6.510 20 C -0.147 4.147 21 S -0.059 6.059 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -9.467 -14.926 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 H 0.154 0.846 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.312 3.688 7 O -0.402 6.402 8 N -0.331 5.331 9 C -0.037 4.037 10 C 0.011 3.989 11 H 0.135 0.865 12 C -0.167 4.167 13 C -0.165 4.165 14 C 0.017 3.983 15 H 0.133 0.867 16 C -0.018 4.018 17 N -0.362 5.362 18 C 0.344 3.656 19 O -0.383 6.383 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.685 4.685 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.372 -11.682 -14.701 22.487 hybrid contribution -0.654 2.242 -0.927 2.512 sum -13.025 -9.441 -15.628 22.428 Atomic orbital electron populations 1.21852 0.89011 1.04727 1.04565 1.18925 0.99303 1.00035 0.85726 0.84609 1.28107 0.93992 0.93895 0.94037 1.81225 1.07694 1.07833 1.11791 1.19917 0.77864 0.87367 0.83687 1.90783 1.51813 1.14354 1.83281 1.48018 1.67417 1.07267 1.10443 1.22698 1.02184 0.79637 0.99204 1.22765 0.91191 1.00107 0.84800 0.86478 1.22503 0.96606 0.96223 1.01320 1.22402 0.95197 0.98016 1.00842 1.22546 0.94395 0.82519 0.98815 0.86741 1.22262 0.99333 0.98103 0.82095 1.49301 1.52112 1.07324 1.27467 1.20060 0.76614 0.88955 0.79925 1.90731 1.45526 1.70430 1.31651 1.23508 1.05902 0.93019 1.07329 1.85471 1.63174 1.05130 1.29481 1.22795 1.38488 0.91887 1.15310 0.90951 1.24993 0.94506 0.99574 0.94459 1.70000 1.30557 1.35542 1.14094 0.86225 0.78349 0.82652 0.78286 1.19914 1.20809 1.19913 0.89993 0.90607 0.89597 0.89713 0.88354 0.90408 0.90310 0.90359 0.90703 0.90457 0.87966 0.89300 0.89240 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 9.14 37.16 0.34 -0.07 16 2 C -0.02 -0.08 2.37 -94.56 -0.22 -0.31 16 3 H 0.14 0.28 6.04 -51.93 -0.31 -0.03 16 4 C 0.22 2.03 14.10 -20.76 -0.29 1.74 16 5 N -0.41 -5.09 18.54 42.16 0.78 -4.31 16 6 C 0.53 4.42 6.71 -10.99 -0.07 4.35 16 7 O -0.53 -6.68 15.87 5.55 0.09 -6.59 16 8 N -0.60 -4.53 2.25 -171.18 -0.39 -4.91 16 9 C 0.09 0.49 5.71 -2.90 -0.02 0.47 16 10 C 0.12 0.83 4.02 -65.35 -0.26 0.57 16 11 H 0.12 0.75 7.40 -51.93 -0.38 0.37 16 12 C -0.13 -0.70 6.16 -25.54 -0.16 -0.86 16 13 C -0.13 -0.89 6.16 -25.54 -0.16 -1.04 16 14 C 0.12 1.18 4.12 -65.69 -0.27 0.91 16 15 H 0.11 1.26 7.92 -51.93 -0.41 0.85 16 16 C 0.10 0.98 5.88 -3.24 -0.02 0.96 16 17 N -0.62 -7.22 2.74 -152.73 -0.42 -7.63 16 18 C 0.56 9.39 7.94 -10.99 -0.09 9.30 16 19 O -0.51 -10.85 16.17 5.56 0.09 -10.76 16 20 C -0.15 -2.67 5.14 36.00 0.19 -2.49 16 21 S -0.06 -1.52 20.57 -107.50 -2.21 -3.74 16 22 C -0.54 -14.52 9.50 30.94 0.29 -14.23 16 23 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 24 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 25 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 26 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 30 H 0.08 0.14 8.13 -51.93 -0.42 -0.28 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.08 5.77 -51.93 -0.30 -0.22 16 33 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.10 0.18 5.58 -51.93 -0.29 -0.11 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.25 5.47 -51.93 -0.28 -0.03 16 37 H 0.08 0.51 7.84 -51.93 -0.41 0.11 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.96 7.15 -51.93 -0.37 0.59 16 41 H 0.09 1.46 8.14 -51.92 -0.42 1.03 16 42 H 0.09 1.48 8.03 -51.91 -0.42 1.07 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -37.56 366.97 -7.34 -44.90 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -5.68 Total: -4.61 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.84 Total: 1.26 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.71 Total: -41.51 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.18 Total: -17.35 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.56 -7.34 -44.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283980708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.674 kcal (2) G-P(sol) polarization free energy of solvation -37.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds