Wall clock time and date at job start Tue Mar 31 2020 19:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47182 * 2 1 4 4 C 1.53009 * 109.47070 * 119.99908 * 2 1 3 5 5 N 1.46500 * 109.46979 * 294.99766 * 4 2 1 6 6 C 1.34774 * 119.99630 * 180.02562 * 5 4 2 7 7 O 1.21349 * 120.00173 * 359.97438 * 6 5 4 8 8 C 1.49453 * 119.99846 * 180.02562 * 6 5 4 9 9 O 1.21353 * 120.00125 * 5.08748 * 8 6 5 10 10 N 1.34774 * 120.00102 * 185.09319 * 8 6 5 11 11 C 1.46494 * 120.00151 * 184.55658 * 10 8 6 12 12 C 1.53003 * 109.47491 * 184.70074 * 11 10 8 13 13 C 1.50708 * 115.54705 * 294.79992 * 12 11 10 14 14 H 1.07999 * 119.99435 * 121.52691 * 13 12 11 15 15 C 1.37869 * 119.99831 * 301.24568 * 13 12 11 16 16 N 1.31521 * 120.00014 * 173.16061 * 15 13 12 17 17 Si 1.86803 * 120.00258 * 353.16421 * 15 13 12 18 18 H 1.48495 * 109.47128 * 94.23742 * 17 15 13 19 19 H 1.48507 * 109.47100 * 214.23862 * 17 15 13 20 20 H 1.48500 * 109.46890 * 334.23636 * 17 15 13 21 21 C 1.53001 * 117.49727 * 80.46616 * 12 11 10 22 22 C 1.52994 * 117.50267 * 149.12521 * 12 11 10 23 23 C 1.50703 * 109.47004 * 239.99757 * 2 1 3 24 24 N 1.29026 * 124.91512 * 120.00478 * 23 2 1 25 25 C 1.31781 * 117.12619 * 179.97438 * 24 23 2 26 26 C 1.33642 * 114.49724 * 359.97438 * 25 24 23 27 27 S 1.70971 * 124.91656 * 299.69508 * 23 2 1 28 28 H 1.09001 * 109.46974 * 300.00190 * 1 2 3 29 29 H 1.08993 * 109.47212 * 59.99706 * 1 2 3 30 30 H 1.08994 * 109.47449 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46714 * 174.99968 * 4 2 1 32 32 H 1.08994 * 109.47239 * 54.99845 * 4 2 1 33 33 H 0.96995 * 120.00213 * 0.02562 * 5 4 2 34 34 H 0.97001 * 120.00152 * 4.55797 * 10 8 6 35 35 H 1.08998 * 109.47592 * 64.70314 * 11 10 8 36 36 H 1.08995 * 109.47447 * 304.69904 * 11 10 8 37 37 H 0.97002 * 120.00052 * 180.02562 * 16 15 13 38 38 H 1.09004 * 117.49881 * 215.00573 * 21 12 11 39 39 H 1.08997 * 117.49907 * 0.02562 * 21 12 11 40 40 H 1.09000 * 117.50159 * 359.97438 * 22 12 11 41 41 H 1.08998 * 117.50086 * 144.97404 * 22 12 11 42 42 H 1.07998 * 122.74884 * 180.02562 * 25 24 23 43 43 H 1.07999 * 126.03519 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4424 6 6 1.9965 -0.4130 3.6659 7 8 2.6268 -1.4437 3.7793 8 6 1.6007 0.3586 4.8831 9 8 0.8918 1.3378 4.7769 10 7 2.0311 -0.0330 6.0988 11 6 1.5634 0.6621 7.3004 12 6 2.2867 0.1030 8.5273 13 6 1.9918 -1.3382 8.8549 14 1 2.7956 -2.0585 8.8934 15 6 0.6968 -1.7358 9.1110 16 7 0.4188 -3.0122 9.2639 17 14 -0.6632 -0.4617 9.2409 18 1 -1.3289 -0.3121 7.9219 19 1 -1.6590 -0.9018 10.2509 20 1 -0.0828 0.8415 9.6531 21 6 3.7001 0.6167 8.8091 22 6 2.5340 1.0572 9.6974 23 6 2.0323 -0.7105 -1.2305 24 7 2.7773 -0.1770 -2.1389 25 6 3.1287 -0.9415 -3.1531 26 6 2.6541 -2.1895 -3.0968 27 16 1.7037 -2.3422 -1.6210 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2953 33 1 1.1483 0.8591 2.3518 34 1 2.6507 -0.7752 6.1781 35 1 0.4895 0.5122 7.4122 36 1 1.7738 1.7276 7.2089 37 1 -0.4924 -3.2920 9.4438 38 1 4.4167 -0.0878 9.2314 39 1 4.1144 1.3532 8.1207 40 1 2.1818 2.0834 9.5932 41 1 2.4830 0.6427 10.7042 42 1 3.7500 -0.5886 -3.9629 43 1 2.8254 -2.9679 -3.8256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343808024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:45 Heat of formation + Delta-G solvation = -0.428319 kcal Electronic energy + Delta-G solvation = -25985.483374 eV Core-core repulsion = 22158.619365 eV Total energy + Delta-G solvation = -3826.864009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.47925 -40.03409 -38.48224 -37.04543 -36.66285 -33.86598 -33.00286 -32.22397 -30.00022 -27.87500 -26.98993 -25.82981 -25.28330 -23.27174 -21.75013 -21.53930 -20.64513 -20.00426 -19.48844 -18.42373 -17.80842 -16.80699 -16.42669 -16.11398 -15.86119 -15.52096 -15.30629 -15.03830 -14.83770 -14.47300 -14.24859 -13.85340 -13.78823 -13.46096 -13.19868 -13.12631 -12.92352 -12.38027 -12.29494 -12.19441 -11.93706 -11.80051 -11.49821 -11.41839 -11.08724 -10.73639 -10.61346 -10.31800 -10.03425 -9.78804 -9.67501 -9.38675 -9.34846 -9.26607 -9.22612 -8.91505 -8.52745 -8.47712 -6.19976 -4.21906 0.29810 0.96858 1.38084 1.68856 2.37996 2.56564 3.23337 3.34510 3.38939 3.49023 3.59736 3.96783 4.24308 4.34173 4.46833 4.61467 4.70092 4.81154 4.93249 4.96389 5.08711 5.17876 5.22982 5.30973 5.40739 5.58590 5.59289 5.73892 5.75554 5.87374 6.06899 6.09137 6.10709 6.34059 6.43614 6.63662 6.76613 6.87318 7.05792 7.12090 7.33698 7.62467 7.72199 8.02750 8.36702 8.41107 8.83163 9.42580 10.91083 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.002282 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.700043 B =12266.432934 C =12498.025377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.029 4.029 3 H 0.112 0.888 4 C 0.125 3.875 5 N -0.706 5.706 6 C 0.510 3.490 7 O -0.509 6.509 8 C 0.498 3.502 9 O -0.541 6.541 10 N -0.663 5.663 11 C 0.149 3.851 12 C -0.019 4.019 13 C -0.491 4.491 14 H 0.080 0.920 15 C 0.082 3.918 16 N -0.888 5.888 17 Si 0.867 3.133 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.251 1.251 21 C -0.180 4.180 22 C -0.186 4.186 23 C 0.055 3.945 24 N -0.472 5.472 25 C 0.037 3.963 26 C -0.263 4.263 27 S 0.139 5.861 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.420 0.580 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.266 0.734 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.177 0.823 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 4.671 -23.122 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.051 4.051 3 H 0.130 0.870 4 C 0.000 4.000 5 N -0.361 5.361 6 C 0.291 3.709 7 O -0.383 6.383 8 C 0.278 3.722 9 O -0.420 6.420 10 N -0.314 5.314 11 C 0.026 3.974 12 C -0.020 4.020 13 C -0.528 4.528 14 H 0.098 0.902 15 C -0.121 4.121 16 N -0.524 5.524 17 Si 0.695 3.305 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.175 1.175 21 C -0.217 4.217 22 C -0.224 4.224 23 C -0.223 4.223 24 N -0.186 5.186 25 C -0.114 4.114 26 C -0.402 4.402 27 S 0.393 5.607 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.258 0.742 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.194 0.806 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.360 4.181 -22.511 22.936 hybrid contribution -0.215 0.795 -0.784 1.137 sum 1.145 4.977 -23.295 23.848 Atomic orbital electron populations 1.21993 0.92160 1.03318 1.03533 1.20017 0.97042 1.00441 0.87635 0.86991 1.21474 1.01054 0.95298 0.82166 1.45612 1.57581 1.28267 1.04661 1.20363 0.80184 0.85717 0.84642 1.90795 1.37745 1.23289 1.86494 1.19917 0.82282 0.85157 0.84857 1.90711 1.38149 1.26549 1.86574 1.45737 1.45728 1.35484 1.04427 1.21305 0.98546 0.94307 0.83248 1.19582 0.94906 0.95690 0.91845 1.20265 0.94529 0.89661 1.48331 0.90169 1.24936 0.98478 0.94893 0.93839 1.69897 1.20403 1.14669 1.47410 0.87047 0.82086 0.83448 0.77905 1.20436 1.21765 1.17479 1.22800 0.92059 1.03112 1.03704 1.23072 1.03726 0.98449 0.97180 1.26791 1.00077 0.95431 1.00025 1.66277 1.12750 1.37161 1.02369 1.21820 1.01918 0.89785 0.97851 1.27190 1.07076 1.02667 1.03256 1.84198 1.47722 1.12311 1.16459 0.90479 0.91387 0.91664 0.90302 0.90381 0.75010 0.74220 0.91993 0.92308 0.92386 0.89454 0.90789 0.91061 0.89134 0.80631 0.80443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.97 37.16 0.33 -0.74 16 2 C -0.03 -0.24 2.85 -91.77 -0.26 -0.50 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.12 1.27 4.92 -4.04 -0.02 1.25 16 5 N -0.71 -8.42 5.28 -60.73 -0.32 -8.74 16 6 C 0.51 8.18 7.89 -11.59 -0.09 8.09 16 7 O -0.51 -9.38 16.50 5.50 0.09 -9.29 16 8 C 0.50 9.10 7.88 -11.58 -0.09 9.01 16 9 O -0.54 -10.44 16.47 5.49 0.09 -10.35 16 10 N -0.66 -13.06 5.46 -60.73 -0.33 -13.40 16 11 C 0.15 3.12 5.08 -4.04 -0.02 3.10 16 12 C -0.02 -0.41 0.85 -155.66 -0.13 -0.55 16 13 C -0.49 -12.89 9.19 -34.44 -0.32 -13.20 16 14 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 15 C 0.08 2.27 5.46 -17.82 -0.10 2.17 16 16 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 17 Si 0.87 20.96 24.69 -169.99 -4.20 16.76 16 18 H -0.28 -6.78 6.96 56.52 0.39 -6.39 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.25 -5.68 6.11 56.52 0.35 -5.33 16 21 C -0.18 -3.40 9.96 -26.70 -0.27 -3.67 16 22 C -0.19 -3.69 8.69 -26.70 -0.23 -3.92 16 23 C 0.05 0.50 6.03 -13.46 -0.08 0.42 16 24 N -0.47 -4.80 10.54 -11.86 -0.13 -4.93 16 25 C 0.04 0.30 11.35 -19.18 -0.22 0.08 16 26 C -0.26 -1.81 11.37 29.12 0.33 -1.48 16 27 S 0.14 1.09 22.67 -107.50 -2.44 -1.35 16 28 H 0.08 0.53 7.18 -51.93 -0.37 0.15 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.41 4.28 7.14 -40.82 -0.29 3.99 16 34 H 0.42 8.36 7.83 -40.82 -0.32 8.04 16 35 H 0.06 1.42 4.27 -51.93 -0.22 1.20 16 36 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 42 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -31.90 376.21 -7.83 -39.73 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.88 Total: 11.19 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.16 Total: 0.06 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.00 Total: -52.42 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.18 Total: -19.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.20 Total: 16.76 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.44 Total: -1.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.90 -7.83 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343808024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.306 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds