Wall clock time and date at job start Tue Mar 31 2020 19:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00105 * 2 1 4 4 O 1.20818 * 119.99796 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99891 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.46971 * 60.00242 * 5 3 2 7 7 N 1.46503 * 109.46998 * 180.02562 * 5 3 2 8 8 C 1.34768 * 120.00207 * 205.00049 * 7 5 3 9 9 O 1.21283 * 120.00141 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00358 * 180.02562 * 8 7 5 11 11 C 1.50701 * 109.47082 * 180.02562 * 10 8 7 12 12 C 1.38307 * 119.92751 * 269.72272 * 11 10 8 13 13 C 1.38105 * 120.06147 * 179.73104 * 12 11 10 14 14 C 1.38872 * 119.93430 * 0.56469 * 13 12 11 15 15 O 1.35750 * 120.06955 * 179.68276 * 14 13 12 16 16 C 1.34838 * 116.99807 * 174.49013 * 15 14 13 17 17 H 1.07994 * 119.99916 * 5.06161 * 16 15 14 18 18 C 1.38659 * 119.99657 * 185.05899 * 16 15 14 19 19 N 1.31560 * 120.00104 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99599 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47048 * 60.00237 * 20 18 16 22 22 H 1.48507 * 109.46707 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47248 * 299.99794 * 20 18 16 24 24 C 1.38887 * 119.86270 * 359.71205 * 14 13 12 25 25 C 1.38093 * 119.92815 * 359.97438 * 24 14 13 26 26 C 1.53000 * 109.47083 * 300.00171 * 5 3 2 27 27 H 1.08994 * 109.47276 * 299.99885 * 26 5 3 28 28 C 1.53001 * 109.47063 * 60.00269 * 26 5 3 29 29 O 1.42904 * 109.46591 * 180.02562 * 26 5 3 30 30 H 1.09005 * 109.47094 * 59.99856 * 1 2 3 31 31 H 1.09007 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47216 * 299.99463 * 1 2 3 33 33 H 0.97000 * 119.99962 * 25.00079 * 7 5 3 34 34 H 1.09004 * 109.47209 * 300.00099 * 10 8 7 35 35 H 1.08996 * 109.47032 * 60.00376 * 10 8 7 36 36 H 1.07994 * 119.96598 * 359.97438 * 12 11 10 37 37 H 1.07999 * 120.02925 * 180.28229 * 13 12 11 38 38 H 0.96992 * 120.00155 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.03351 * 179.97438 * 24 14 13 40 40 H 1.07999 * 119.96394 * 180.02562 * 25 24 14 41 41 H 1.09005 * 109.46992 * 59.99828 * 28 26 5 42 42 H 1.09001 * 109.46975 * 179.97438 * 28 26 5 43 43 H 1.08994 * 109.47234 * 299.99800 * 28 26 5 44 44 H 0.96691 * 114.00259 * 60.00511 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9564 0.7805 -0.8891 7 7 3.9818 2.6797 0.0011 8 6 5.1874 3.0261 -0.4916 9 8 5.9283 2.1749 -0.9359 10 6 5.6149 4.4712 -0.4906 11 6 6.9921 4.5880 -1.0912 12 6 8.1085 4.5026 -0.2793 13 6 9.3721 4.6037 -0.8275 14 6 9.5207 4.8030 -2.1938 15 8 10.7613 4.9092 -2.7347 16 6 10.8385 4.9870 -4.0786 17 1 9.9360 5.0460 -4.6688 18 6 12.0766 4.9913 -4.7028 19 7 13.1760 4.9190 -3.9838 20 14 12.1836 5.0999 -6.5645 21 1 11.5456 6.3595 -7.0244 22 1 13.6093 5.0873 -6.9799 23 1 11.4810 3.9396 -7.1692 24 6 8.3975 4.8940 -3.0057 25 6 7.1369 4.7856 -2.4524 26 6 4.1129 0.5814 1.2502 27 1 3.7229 1.0757 2.1399 28 6 3.6790 -0.8858 1.2502 29 8 5.5399 0.6567 1.2509 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 3.3891 3.3606 0.3561 34 1 4.9109 5.0588 -1.0799 35 1 5.6319 4.8443 0.5334 36 1 7.9921 4.3529 0.7839 37 1 10.2435 4.5324 -0.1937 38 1 14.0421 4.9224 -4.4203 39 1 8.5099 5.0493 -4.0685 40 1 6.2631 4.8559 -3.0832 41 1 4.0692 -1.3801 0.3604 42 1 4.0688 -1.3799 2.1402 43 1 2.5906 -0.9429 1.2498 44 1 5.8861 1.5595 1.2512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455710421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:42 Heat of formation + Delta-G solvation = -165.364760 kcal Electronic energy + Delta-G solvation = -28800.747264 eV Core-core repulsion = 24491.685452 eV Total energy + Delta-G solvation = -4309.061812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.43035 -39.98314 -38.87995 -37.53504 -37.12983 -36.40659 -34.52623 -32.51605 -32.09246 -31.17696 -30.12508 -28.70799 -27.54554 -26.10603 -24.98199 -22.79485 -21.95295 -21.63634 -20.82240 -20.28757 -18.41626 -18.16226 -17.94533 -17.69456 -16.92990 -16.69805 -16.54673 -16.16360 -15.36357 -14.69162 -14.64256 -14.40898 -14.20106 -14.05696 -13.79960 -13.73614 -13.52858 -13.37092 -13.06953 -12.74404 -12.67316 -12.49758 -12.46400 -12.25758 -11.87140 -11.76146 -11.51200 -11.23677 -11.21176 -10.99969 -10.83076 -10.74519 -10.61636 -10.55816 -10.41206 -9.89474 -9.35260 -9.29732 -8.78760 -8.12316 -7.14245 -6.41333 -3.99910 1.56117 1.86354 2.28029 2.30243 2.56724 2.98935 3.15703 3.17946 3.19881 3.96639 4.00141 4.10761 4.33215 4.52187 4.58224 4.61031 4.69689 4.87998 4.96260 5.03239 5.10126 5.12212 5.23482 5.32516 5.34972 5.52580 5.63501 5.64937 5.72900 5.74827 5.86337 5.96695 6.00016 6.24575 6.44521 6.72543 6.93753 7.07319 7.09592 7.20785 7.27135 7.39100 7.40300 7.48292 7.86500 8.03772 8.09953 9.04197 9.74523 10.76632 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.002167 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.842880 B =12915.815674 C =13105.905661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.346 6.346 3 C 0.465 3.535 4 O -0.498 6.498 5 C 0.118 3.882 6 H 0.135 0.865 7 N -0.733 5.733 8 C 0.505 3.495 9 O -0.498 6.498 10 C -0.076 4.076 11 C -0.174 4.174 12 C -0.058 4.058 13 C -0.191 4.191 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.232 4.232 25 C -0.055 4.055 26 C 0.102 3.898 27 H 0.059 0.941 28 C -0.157 4.157 29 O -0.540 6.540 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.205 -7.148 10.733 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.262 6.262 3 C 0.307 3.693 4 O -0.385 6.385 5 C 0.010 3.990 6 H 0.152 0.848 7 N -0.391 5.391 8 C 0.293 3.707 9 O -0.370 6.370 10 C -0.116 4.116 11 C -0.175 4.175 12 C -0.077 4.077 13 C -0.210 4.210 14 C 0.104 3.896 15 O -0.080 6.080 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.252 4.252 25 C -0.073 4.073 26 C 0.041 3.959 27 H 0.077 0.923 28 C -0.214 4.214 29 O -0.347 6.347 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -24.427 -8.113 10.436 27.774 hybrid contribution -0.607 1.068 -0.952 1.554 sum -25.033 -7.045 9.484 27.681 Atomic orbital electron populations 1.23379 0.75915 1.04163 1.02846 1.86596 1.23723 1.32290 1.83570 1.23510 0.91492 0.81901 0.72413 1.90678 1.66735 1.36258 1.44867 1.21356 0.87019 0.86071 1.04512 0.84782 1.46088 1.19894 1.07059 1.66109 1.21354 0.80123 0.92560 0.76698 1.90845 1.51728 1.51529 1.42896 1.20401 0.96757 0.91440 1.03028 1.18584 0.92062 1.12972 0.93893 1.20388 0.91457 0.97858 0.97953 1.20154 0.97182 1.10791 0.92892 1.19393 0.85863 0.91899 0.92487 1.83978 1.22265 1.78299 1.23502 1.21279 0.94239 1.52495 0.78729 0.89133 1.25288 0.94179 0.96599 1.00473 1.70029 0.97732 1.45973 1.36029 0.85785 0.77825 0.79160 0.80679 1.19538 1.20292 1.19496 1.21101 0.92070 1.11372 1.00636 1.20502 0.96189 0.97040 0.93612 1.22000 0.83066 0.97386 0.93447 0.92343 1.22007 1.02477 0.93069 1.03820 1.86608 1.17900 1.33424 1.96766 0.91621 0.87626 0.91607 0.75418 0.88678 0.88636 0.87305 0.86514 0.91993 0.85616 0.87876 0.91116 0.91241 0.89260 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.56 101.05 1.07 1.21 16 2 O -0.35 -2.53 7.48 -39.25 -0.29 -2.83 16 3 C 0.47 4.19 7.26 36.01 0.26 4.46 16 4 O -0.50 -5.35 15.59 -18.74 -0.29 -5.65 16 5 C 0.12 1.14 2.49 -69.08 -0.17 0.97 16 6 H 0.13 1.51 7.58 -51.93 -0.39 1.12 16 7 N -0.73 -7.02 4.86 -54.93 -0.27 -7.29 16 8 C 0.51 6.29 6.42 -10.99 -0.07 6.22 16 9 O -0.50 -8.44 14.07 -11.86 -0.17 -8.61 16 10 C -0.08 -0.88 5.83 -29.03 -0.17 -1.05 16 11 C -0.17 -2.90 4.38 -104.57 -0.46 -3.36 16 12 C -0.06 -1.03 9.69 -39.60 -0.38 -1.42 16 13 C -0.19 -4.11 9.99 -39.40 -0.39 -4.50 16 14 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 15 O -0.18 -5.16 9.76 0.03 0.00 -5.16 16 16 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 19 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 20 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 25 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 26 C 0.10 0.96 3.41 -26.73 -0.09 0.87 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 C -0.16 -1.26 9.04 37.16 0.34 -0.92 16 29 O -0.54 -6.84 12.47 -52.64 -0.66 -7.49 16 30 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.11 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.07 0.29 8.13 -51.93 -0.42 -0.13 16 33 H 0.41 3.20 7.79 -40.82 -0.32 2.88 16 34 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 2.81 5.64 -52.48 -0.30 2.51 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.58 5.32 -51.93 -0.28 0.31 16 44 H 0.38 4.58 6.54 45.56 0.30 4.88 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -35.26 373.88 -6.23 -41.48 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.04 Total: 9.65 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.88 Total: -10.71 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.49 Total: -32.19 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.41 Total: -29.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.26 -6.23 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455710421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.882 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds