Wall clock time and date at job start Tue Mar 31 2020 19:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 H 1.09002 * 109.46446 * 2 1 4 4 N 1.46498 * 109.46989 * 240.00304 * 2 1 3 5 5 C 1.34772 * 120.00242 * 85.00267 * 4 2 1 6 6 O 1.21707 * 120.00112 * 359.97438 * 5 4 2 7 7 C 1.46579 * 120.00244 * 179.97438 * 5 4 2 8 8 C 1.36649 * 125.46175 * 179.71904 * 7 5 4 9 9 C 1.37466 * 113.29977 * 179.80132 * 8 7 5 10 10 C 1.33823 * 115.10217 * 0.49265 * 9 8 7 11 11 S 1.70625 * 110.95148 * 359.72567 * 10 9 8 12 12 C 1.50698 * 109.46778 * 119.99909 * 2 1 3 13 13 O 1.21286 * 119.99386 * 120.00367 * 12 2 1 14 14 N 1.34775 * 120.00187 * 299.99922 * 12 2 1 15 15 C 1.46502 * 119.99634 * 179.97438 * 14 12 2 16 16 H 1.08993 * 110.92187 * 328.90765 * 15 14 12 17 17 C 1.55159 * 111.00447 * 204.99985 * 15 14 12 18 18 C 1.54317 * 102.94305 * 206.42716 * 17 15 14 19 19 N 1.47016 * 107.27340 * 22.19881 * 18 17 15 20 20 C 1.36942 * 125.65288 * 181.02187 * 19 18 17 21 21 H 1.07997 * 120.00223 * 189.86021 * 20 19 18 22 22 C 1.38816 * 119.99484 * 9.86482 * 20 19 18 23 23 N 1.31621 * 119.99698 * 208.77250 * 22 20 19 24 24 Si 1.86802 * 120.00167 * 29.04717 * 22 20 19 25 25 H 1.48491 * 109.47398 * 275.03019 * 24 22 20 26 26 H 1.48507 * 109.46925 * 35.03216 * 24 22 20 27 27 H 1.48502 * 109.46776 * 155.02653 * 24 22 20 28 28 C 1.47425 * 108.70453 * 1.28067 * 19 18 17 29 29 H 1.08992 * 109.46753 * 59.99952 * 1 2 3 30 30 H 1.09002 * 109.46446 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47069 * 299.99928 * 1 2 3 32 32 H 0.97002 * 119.99899 * 264.99801 * 4 2 1 33 33 H 1.08001 * 123.34830 * 359.97438 * 8 7 5 34 34 H 1.07999 * 122.45473 * 180.24095 * 9 8 7 35 35 H 1.07995 * 124.52877 * 179.70880 * 10 9 8 36 36 H 0.96996 * 120.00137 * 0.02562 * 14 12 2 37 37 H 1.09003 * 110.71917 * 88.06481 * 17 15 14 38 38 H 1.08998 * 110.71874 * 324.79692 * 17 15 14 39 39 H 1.09000 * 109.88341 * 262.77490 * 18 17 15 40 40 H 1.09000 * 110.01115 * 141.68373 * 18 17 15 41 41 H 0.96994 * 119.99751 * 5.08830 * 23 22 20 42 42 H 1.09000 * 110.36411 * 94.48484 * 28 19 18 43 43 H 1.08996 * 110.37033 * 216.81256 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1472 -0.0182 -2.3571 6 8 1.8574 1.1626 -2.4119 7 6 2.6363 -0.7090 -3.5538 8 6 2.8041 -0.1399 -4.7848 9 6 3.2817 -1.0174 -5.7290 10 6 3.4886 -2.2650 -5.2914 11 16 3.0940 -2.4047 -3.6373 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2499 2.4546 15 6 2.1946 -0.9410 3.6507 16 1 2.3056 -2.0092 3.4650 17 6 1.2613 -0.6812 4.8626 18 6 2.2070 -0.8517 6.0701 19 7 3.5782 -0.6396 5.5839 20 6 4.7156 -0.7225 6.3420 21 1 5.6610 -0.3957 5.9349 22 6 4.6534 -1.2268 7.6339 23 7 5.5163 -0.8207 8.5411 24 14 3.3498 -2.4873 8.0828 25 1 2.0906 -1.7892 8.4463 26 1 3.1037 -3.3797 6.9216 27 1 3.8192 -3.2950 9.2371 28 6 3.5255 -0.3167 4.1464 29 1 -0.3632 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 2.5859 0.8969 -4.9943 34 1 3.4722 -0.7226 -6.7504 35 1 3.8560 -3.0754 -5.9034 36 1 1.1489 0.5385 2.5436 37 1 0.4577 -1.4170 4.8952 38 1 0.8578 0.3308 4.8286 39 1 2.1097 -1.8578 6.4780 40 1 1.9681 -0.1159 6.8379 41 1 6.1479 -0.1161 8.3284 42 1 3.5182 0.7634 4.0003 43 1 4.3715 -0.7652 3.6256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661006521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:32 Heat of formation + Delta-G solvation = -3.769359 kcal Electronic energy + Delta-G solvation = -26145.772648 eV Core-core repulsion = 22318.763760 eV Total energy + Delta-G solvation = -3827.008888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.65817 -39.55111 -37.97025 -37.56882 -35.21811 -34.37903 -32.40170 -31.50607 -29.82135 -29.35649 -27.83810 -25.73989 -24.70579 -23.66433 -21.83470 -21.05221 -20.58931 -20.15793 -19.76113 -19.17153 -17.63062 -16.98791 -16.81218 -16.17954 -16.08036 -15.50117 -15.39825 -15.19597 -14.88100 -14.19950 -13.92126 -13.68840 -13.39260 -13.37259 -13.18200 -13.08723 -12.88298 -12.77241 -12.59512 -12.54506 -12.12304 -11.93776 -11.42352 -11.35761 -11.18859 -11.07056 -10.65964 -10.45384 -10.26790 -10.02457 -9.62303 -9.56167 -9.25910 -9.21678 -9.00788 -8.99583 -8.46425 -7.10748 -6.37933 -3.19347 0.10672 1.06958 1.48277 1.99570 2.44253 2.50547 2.86597 3.18570 3.41677 3.53319 3.70543 4.31595 4.48064 4.59382 4.62164 4.70362 4.81391 4.89327 4.89940 5.03989 5.06323 5.22128 5.31850 5.32894 5.40794 5.45625 5.54025 5.75231 5.76244 5.81791 5.84378 5.90099 5.94775 6.04133 6.28722 6.46327 6.48276 6.68358 6.71636 7.08073 7.39008 7.67829 7.77965 8.06199 8.33041 9.00648 9.55824 10.21888 11.11211 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.002224 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.925245 B =12586.303399 C =13078.240931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 H 0.119 0.881 4 N -0.709 5.709 5 C 0.597 3.403 6 O -0.530 6.530 7 C -0.270 4.270 8 C -0.054 4.054 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.213 5.787 12 C 0.510 3.490 13 O -0.533 6.533 14 N -0.709 5.709 15 C 0.124 3.876 16 H 0.102 0.898 17 C -0.134 4.134 18 C 0.121 3.879 19 N -0.606 5.606 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.911 5.911 24 Si 1.054 2.946 25 H -0.293 1.293 26 H -0.292 1.292 27 H -0.298 1.298 28 C 0.128 3.872 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.044 0.956 41 H 0.265 0.735 42 H 0.028 0.972 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 -0.678 -27.382 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.136 0.864 4 N -0.362 5.362 5 C 0.383 3.617 6 O -0.408 6.408 7 C -0.390 4.390 8 C -0.087 4.087 9 C -0.183 4.183 10 C -0.368 4.368 11 S 0.481 5.519 12 C 0.294 3.706 13 O -0.410 6.410 14 N -0.359 5.359 15 C 0.019 3.981 16 H 0.120 0.880 17 C -0.172 4.172 18 C -0.005 4.005 19 N -0.334 5.334 20 C -0.459 4.459 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.551 5.551 24 Si 0.887 3.113 25 H -0.221 1.221 26 H -0.220 1.220 27 H -0.226 1.226 28 C 0.000 4.000 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.033 -2.753 -25.140 28.008 hybrid contribution 0.470 1.966 -2.365 3.111 sum -11.563 -0.787 -27.505 29.847 Atomic orbital electron populations 1.22146 0.92483 1.03350 1.03816 1.20817 0.95865 0.98269 0.83316 0.86382 1.45596 1.67485 1.14679 1.08435 1.16887 0.77151 0.86006 0.81658 1.90835 1.50498 1.14808 1.84663 1.24572 1.16570 0.99019 0.98850 1.20813 0.96267 1.01470 0.90185 1.20062 1.04088 0.92503 1.01667 1.25409 1.08174 1.02372 1.00858 1.83312 1.58317 1.05585 1.04722 1.20464 0.80446 0.84844 0.84804 1.90729 1.37509 1.26304 1.86440 1.45884 1.52976 1.31803 1.05286 1.22478 0.95305 0.97934 0.82409 0.88027 1.22851 0.97746 1.01852 0.94786 1.21603 0.85161 0.98894 0.94806 1.44747 1.01500 1.83369 1.03817 1.20028 0.86997 1.42529 0.96341 0.90395 1.25780 1.02698 1.01760 0.91198 1.70889 1.22148 1.29493 1.32541 0.83973 0.75131 0.77617 0.74629 1.22112 1.22018 1.22602 1.21962 0.94783 0.97021 0.86193 0.90665 0.91577 0.90575 0.75444 0.82797 0.83617 0.81264 0.76436 0.90762 0.90813 0.95324 0.93820 0.92554 0.95457 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.38 37.16 0.35 -0.92 16 2 C 0.13 1.31 2.98 -69.08 -0.21 1.10 16 3 H 0.12 1.24 7.58 -51.93 -0.39 0.84 16 4 N -0.71 -7.79 4.95 -56.27 -0.28 -8.07 16 5 C 0.60 7.06 7.75 -12.90 -0.10 6.96 16 6 O -0.53 -7.56 16.50 5.18 0.09 -7.47 16 7 C -0.27 -2.68 6.45 -36.79 -0.24 -2.92 16 8 C -0.05 -0.47 10.01 -40.44 -0.40 -0.87 16 9 C -0.15 -1.03 10.15 -41.41 -0.42 -1.45 16 10 C -0.23 -1.47 10.92 29.18 0.32 -1.15 16 11 S 0.21 1.64 22.16 -107.50 -2.38 -0.74 16 12 C 0.51 6.60 7.22 -10.99 -0.08 6.52 16 13 O -0.53 -8.86 15.48 5.55 0.09 -8.77 16 14 N -0.71 -8.59 5.09 -51.61 -0.26 -8.85 16 15 C 0.12 2.00 3.44 -65.66 -0.23 1.77 16 16 H 0.10 1.82 7.54 -51.93 -0.39 1.43 16 17 C -0.13 -2.03 6.59 -24.90 -0.16 -2.19 16 18 C 0.12 2.55 5.00 -3.07 -0.02 2.53 16 19 N -0.61 -14.90 3.28 -169.94 -0.56 -15.46 16 20 C -0.33 -9.60 10.41 -15.06 -0.16 -9.76 16 21 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 22 C -0.01 -0.39 5.41 -17.43 -0.09 -0.48 16 23 N -0.91 -28.50 13.70 55.49 0.76 -27.74 16 24 Si 1.05 26.57 24.74 -169.99 -4.21 22.36 16 25 H -0.29 -6.86 6.76 56.52 0.38 -6.48 16 26 H -0.29 -7.11 6.86 56.52 0.39 -6.72 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 28 C 0.13 2.60 6.93 -2.41 -0.02 2.59 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 32 H 0.41 4.37 6.90 -40.82 -0.28 4.09 16 33 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.40 3.57 7.98 -40.82 -0.33 3.25 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 39 H 0.03 0.65 3.71 -51.93 -0.19 0.46 16 40 H 0.04 0.96 8.01 -51.93 -0.42 0.54 16 41 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -35.54 368.25 -8.46 -44.00 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.80 Total: 3.47 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.45 Total: 1.73 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.34 Total: -60.12 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.25 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.21 Total: 22.36 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.38 Total: -0.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.54 -8.46 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661006521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.234 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds