Wall clock time and date at job start Tue Mar 31 2020 20:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00086 * 2 1 4 4 O 1.21283 * 120.00161 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99686 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.77831 * 61.78915 * 5 3 2 7 7 C 1.55160 * 110.71962 * 185.02445 * 5 3 2 8 8 C 1.54910 * 101.58122 * 82.86206 * 7 5 3 9 9 N 1.47425 * 104.83231 * 37.00939 * 8 7 5 10 10 C 1.34771 * 125.64767 * 156.13676 * 9 8 7 11 11 O 1.21587 * 120.00199 * 179.69157 * 10 9 8 12 12 N 1.34778 * 120.00238 * 359.68759 * 10 9 8 13 13 C 1.46495 * 120.00121 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47574 * 325.00548 * 13 12 10 15 15 C 1.50704 * 109.47350 * 205.00159 * 13 12 10 16 16 H 1.08005 * 119.99491 * 0.02562 * 15 13 12 17 17 C 1.37877 * 120.00408 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99663 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00002 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47450 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47200 * 120.00421 * 19 17 15 22 22 H 1.48509 * 109.46936 * 240.00164 * 19 17 15 23 23 C 1.52998 * 109.46781 * 85.00523 * 13 12 10 24 24 F 1.39902 * 109.47381 * 60.00197 * 23 13 12 25 25 F 1.39907 * 109.47028 * 179.97438 * 23 13 12 26 26 F 1.39901 * 109.47189 * 299.99470 * 23 13 12 27 27 C 1.47026 * 108.70074 * 335.87083 * 9 8 7 28 28 H 1.09002 * 109.47093 * 59.99316 * 1 2 3 29 29 H 1.08996 * 109.47429 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46672 * 300.00234 * 1 2 3 31 31 H 0.97002 * 119.99489 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47103 * 298.20975 * 6 5 3 33 33 H 1.09000 * 109.47385 * 58.21268 * 6 5 3 34 34 H 1.09004 * 109.47258 * 178.21380 * 6 5 3 35 35 H 1.08991 * 111.00600 * 200.93823 * 7 5 3 36 36 H 1.09004 * 111.00084 * 324.75270 * 7 5 3 37 37 H 1.09001 * 110.36852 * 278.17238 * 8 7 5 38 38 H 1.08998 * 110.36449 * 155.84885 * 8 7 5 39 39 H 0.97000 * 119.99585 * 0.02562 * 12 10 9 40 40 H 0.97003 * 119.99993 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.87531 * 120.47707 * 27 9 8 42 42 H 1.08996 * 109.88343 * 241.48426 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1670 0.0006 6 6 4.1891 0.4905 -1.2596 7 6 4.1949 2.6127 0.1276 8 6 4.1280 2.8374 1.6588 9 7 4.4867 1.5342 2.2475 10 6 4.9955 1.3428 3.4807 11 8 5.2500 0.2178 3.8655 12 7 5.2225 2.3983 4.2875 13 6 5.7750 2.1902 5.6281 14 1 5.3861 1.2594 6.0410 15 6 5.3785 3.3392 6.5190 16 1 4.7748 4.1439 6.1258 17 6 5.7854 3.3628 7.8361 18 7 6.5200 2.3827 8.3149 19 14 5.2932 4.7867 8.9404 20 1 4.4721 5.7524 8.1667 21 1 4.5025 4.2731 10.0876 22 1 6.5133 5.4665 9.4450 23 6 7.3007 2.1128 5.5445 24 9 7.8000 3.3075 5.0147 25 9 7.8286 1.9146 6.8249 26 9 7.6690 1.0461 4.7176 27 6 4.1914 0.4775 1.2688 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 3.8638 -0.5496 -1.2826 33 1 3.8123 1.0087 -2.1414 34 1 5.2784 0.5303 -1.2526 35 1 5.2221 2.6735 -0.2317 36 1 3.5561 3.3209 -0.4001 37 1 3.1192 3.1233 1.9566 38 1 4.8446 3.6007 1.9619 39 1 5.0192 3.2958 3.9806 40 1 6.8060 2.3991 9.2417 41 1 5.1024 -0.0713 1.0298 42 1 3.4435 -0.2042 1.6737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932903821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:10 Heat of formation + Delta-G solvation = -195.500258 kcal Electronic energy + Delta-G solvation = -31235.985980 eV Core-core repulsion = 26416.053405 eV Total energy + Delta-G solvation = -4819.932575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.29740 -45.95020 -45.56625 -40.87557 -39.20669 -37.15380 -34.90837 -34.59875 -33.20033 -32.33494 -29.72698 -28.51416 -27.24163 -26.20850 -24.51981 -23.38342 -22.41933 -21.36977 -19.85597 -19.51041 -18.31144 -17.41096 -16.84945 -16.66813 -16.58217 -16.14118 -15.70348 -15.61123 -15.23809 -15.16361 -14.69876 -14.26262 -13.76131 -13.64795 -13.36602 -13.18189 -12.88712 -12.82798 -12.66366 -12.63785 -12.53681 -12.47505 -12.37162 -12.33798 -12.23560 -11.92114 -11.77652 -11.42965 -11.26806 -11.14446 -11.02630 -10.84274 -10.76175 -10.37148 -9.95030 -9.62042 -9.53437 -9.38562 -8.71179 -8.49689 -8.07551 -6.21557 -4.44973 2.40881 2.92210 2.98622 3.19602 3.27207 3.31309 3.74973 4.07321 4.20249 4.31452 4.47393 4.54857 4.68974 4.71544 4.95825 4.97256 5.08570 5.21745 5.24592 5.29647 5.42077 5.52724 5.60154 5.65838 5.72802 5.79842 5.81307 5.87202 5.92311 6.02702 6.12293 6.23425 6.42186 6.90414 7.18818 7.24434 7.41673 7.64185 7.68513 7.97417 8.51845 8.61635 9.15231 9.26321 10.70190 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003387 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.116165 B = 8265.260941 C = 8927.617721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.531 3.469 4 O -0.532 6.532 5 C -0.099 4.099 6 C -0.132 4.132 7 C -0.108 4.108 8 C 0.099 3.901 9 N -0.642 5.642 10 C 0.719 3.281 11 O -0.582 6.582 12 N -0.722 5.722 13 C 0.262 3.738 14 H 0.085 0.915 15 C -0.550 4.550 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.840 5.840 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.416 3.584 24 F -0.210 7.210 25 F -0.137 7.137 26 F -0.217 7.217 27 C 0.144 3.856 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.403 0.597 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.394 0.606 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 -3.311 -17.781 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.317 3.683 4 O -0.408 6.408 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.146 4.146 8 C -0.025 4.025 9 N -0.382 5.382 10 C 0.420 3.580 11 O -0.459 6.459 12 N -0.375 5.375 13 C 0.155 3.845 14 H 0.103 0.897 15 C -0.587 4.587 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.360 3.640 24 F -0.192 7.192 25 F -0.118 7.118 26 F -0.199 7.199 27 C 0.019 3.981 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.237 0.763 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.229 0.771 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.052 -3.488 -17.176 18.892 hybrid contribution 0.205 0.666 0.460 0.835 sum -6.847 -2.822 -16.716 18.283 Atomic orbital electron populations 1.21545 0.79437 1.02275 1.02382 1.45770 1.07844 1.08811 1.76156 1.20256 0.89300 0.83639 0.75119 1.90695 1.70041 1.31219 1.48796 1.21870 0.91850 0.99319 0.97260 1.21743 1.02176 1.00152 0.94887 1.22752 1.01889 0.93965 0.96018 1.22290 1.01042 0.86401 0.92738 1.47512 1.68993 1.07565 1.14173 1.15541 0.78091 0.85373 0.78948 1.90916 1.58601 1.22325 1.74045 1.45278 1.67945 1.07818 1.16476 1.19625 0.83595 1.02414 0.78819 0.89733 1.20917 1.36452 1.06770 0.94610 0.90461 1.25074 0.94014 0.97162 0.98127 1.70418 1.31057 1.30770 1.15056 0.86156 0.78443 0.81223 0.79985 1.19402 1.20575 1.20561 1.23169 0.95500 0.71471 0.73897 1.92982 1.90131 1.48887 1.87213 1.93403 1.88409 1.94472 1.35554 1.93070 1.93856 1.58653 1.74276 1.21657 1.00515 0.89988 0.85894 0.92242 0.90622 0.92088 0.76345 0.91798 0.91501 0.90633 0.89617 0.88519 0.91076 0.90440 0.77143 0.92198 0.90432 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.29 16 2 N -0.73 -6.22 5.35 -67.07 -0.36 -6.58 16 3 C 0.53 5.97 6.30 -10.99 -0.07 5.90 16 4 O -0.53 -7.78 15.43 5.56 0.09 -7.69 16 5 C -0.10 -0.98 0.76 -153.83 -0.12 -1.09 16 6 C -0.13 -0.88 8.42 37.16 0.31 -0.57 16 7 C -0.11 -1.12 5.75 -24.58 -0.14 -1.26 16 8 C 0.10 1.30 6.32 -2.53 -0.02 1.29 16 9 N -0.64 -10.38 3.33 -176.24 -0.59 -10.97 16 10 C 0.72 15.17 8.02 -86.92 -0.70 14.47 16 11 O -0.58 -14.38 15.24 5.29 0.08 -14.29 16 12 N -0.72 -15.60 4.95 -59.82 -0.30 -15.90 16 13 C 0.26 6.68 2.21 -69.08 -0.15 6.53 16 14 H 0.09 2.42 7.58 -51.93 -0.39 2.02 16 15 C -0.55 -14.30 8.46 -34.44 -0.29 -14.59 16 16 H 0.08 1.91 7.74 -52.48 -0.41 1.51 16 17 C 0.06 1.71 5.20 -17.82 -0.09 1.61 16 18 N -0.84 -23.23 9.50 55.43 0.53 -22.71 16 19 Si 0.92 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.42 10.90 2.81 37.16 0.10 11.00 16 24 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 25 F -0.14 -3.85 12.91 2.25 0.03 -3.83 16 26 F -0.22 -5.65 15.67 2.25 0.04 -5.62 16 27 C 0.14 1.83 6.01 -3.07 -0.02 1.81 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.40 2.42 8.34 -40.82 -0.34 2.08 16 32 H 0.06 0.33 7.85 -51.93 -0.41 -0.08 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 35 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.10 1.00 7.31 -51.93 -0.38 0.62 16 37 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 38 H 0.08 0.97 7.30 -51.93 -0.38 0.59 16 39 H 0.39 7.55 7.02 -40.82 -0.29 7.26 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.08 0.96 7.82 -51.93 -0.41 0.56 16 42 H 0.06 0.83 7.44 -51.93 -0.39 0.45 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -33.95 354.54 -6.13 -40.08 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.46 Total: 5.69 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: -0.54 Total: 26.40 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.71 Total: -56.15 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.99 kcal Atomic # 9 Polarization: -14.79 SS G_CDS: 0.10 Total: -14.68 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.95 -6.13 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932903821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.423 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds