Wall clock time and date at job start Tue Mar 31 2020 19:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99737 * 2 1 4 4 H 1.48501 * 109.46815 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47082 * 59.99905 * 3 2 1 6 6 H 1.48494 * 109.47178 * 299.99702 * 3 2 1 7 7 C 1.38814 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00193 * 143.98620 * 7 2 1 9 9 N 1.36941 * 119.99521 * 323.98893 * 7 2 1 10 10 C 1.47425 * 125.65048 * 3.56589 * 9 7 2 11 11 C 1.54913 * 104.82832 * 204.08702 * 10 9 7 12 12 C 1.55156 * 101.58366 * 322.98686 * 11 10 9 13 13 H 1.08995 * 110.71884 * 276.96067 * 12 11 10 14 14 N 1.46905 * 110.71920 * 153.86559 * 12 11 10 15 15 C 1.46897 * 110.99795 * 179.59669 * 14 12 11 16 16 C 1.53243 * 109.33995 * 172.74630 * 15 14 12 17 17 N 1.47082 * 108.51798 * 53.82883 * 16 15 14 18 18 C 1.34775 * 120.87542 * 128.83795 * 17 16 15 19 19 O 1.21603 * 120.00176 * 6.34962 * 18 17 16 20 20 C 1.47447 * 119.99577 * 186.34699 * 18 17 16 21 21 C 1.37989 * 124.15666 * 187.77894 * 20 18 17 22 22 S 1.72102 * 104.03310 * 180.02562 * 21 20 18 23 23 N 1.56400 * 96.15797 * 359.97438 * 22 21 20 24 24 N 1.27420 * 109.87325 * 359.72683 * 23 22 21 25 25 C 1.47078 * 118.23871 * 308.81597 * 17 16 15 26 26 C 1.46900 * 110.99806 * 55.29572 * 14 12 11 27 27 C 1.47029 * 125.64487 * 183.24736 * 9 7 2 28 28 H 0.97006 * 120.00130 * 183.96871 * 1 2 3 29 29 H 1.09000 * 110.36284 * 322.92345 * 10 9 7 30 30 H 1.08994 * 110.37118 * 85.24607 * 10 9 7 31 31 H 1.09005 * 111.00325 * 81.06042 * 11 10 9 32 32 H 1.08997 * 111.00414 * 204.91096 * 11 10 9 33 33 H 1.08995 * 109.49611 * 292.70882 * 15 14 12 34 34 H 1.09005 * 109.49137 * 52.78726 * 15 14 12 35 35 H 1.08996 * 109.62450 * 294.12328 * 16 15 14 36 36 H 1.08995 * 109.62615 * 173.54119 * 16 15 14 37 37 H 1.08001 * 127.97563 * 0.04031 * 21 20 18 38 38 H 1.08999 * 109.63006 * 291.47839 * 25 17 16 39 39 H 1.08999 * 109.62574 * 170.89666 * 25 17 16 40 40 H 1.08994 * 109.49324 * 307.21107 * 26 14 12 41 41 H 1.09001 * 109.49090 * 67.26647 * 26 14 12 42 42 H 1.08993 * 109.88324 * 298.39814 * 27 9 7 43 43 H 1.08998 * 109.87794 * 59.56236 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 1.2125 6 1 1.8914 2.3964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 2.9354 -1.2917 -0.5493 9 7 1.5219 -2.2744 0.6983 10 6 0.2409 -2.3141 1.4270 11 6 0.4292 -3.4154 2.5001 12 6 1.2820 -4.4581 1.7301 13 1 0.6472 -5.1001 1.1196 14 7 2.0873 -5.2601 2.6609 15 6 2.8902 -6.2560 1.9388 16 6 3.8453 -6.9453 2.9191 17 7 3.0585 -7.4766 4.0424 18 6 3.1885 -8.7603 4.4318 19 8 4.0445 -9.4640 3.9309 20 6 2.2929 -9.3114 5.4654 21 6 2.4449 -10.5578 6.0378 22 16 1.1400 -10.6659 7.1548 23 7 0.5420 -9.2530 6.8515 24 7 1.2441 -8.6668 5.9643 25 6 2.1265 -6.5699 4.7297 26 6 1.2390 -5.8955 3.6781 27 6 2.1851 -3.5790 0.8393 28 1 -0.4850 -0.8381 0.0581 29 1 0.0442 -1.3524 1.9009 30 1 -0.5722 -2.5782 0.7509 31 1 0.9699 -3.0301 3.3646 32 1 -0.5301 -3.8386 2.7980 33 1 2.2308 -6.9990 1.4903 34 1 3.4662 -5.7611 1.1569 35 1 4.5725 -6.2232 3.2905 36 1 4.3611 -7.7621 2.4145 37 1 3.2070 -11.2949 5.8324 38 1 2.6884 -5.8118 5.2752 39 1 1.5060 -7.1387 5.4221 40 1 0.6177 -5.1392 4.1576 41 1 0.6022 -6.6432 3.2053 42 1 2.3057 -4.0413 -0.1403 43 1 3.1582 -3.4507 1.3133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046046830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:04 Heat of formation + Delta-G solvation = 106.362737 kcal Electronic energy + Delta-G solvation = -27113.132151 eV Core-core repulsion = 23323.191701 eV Total energy + Delta-G solvation = -3789.940451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73235 -39.97943 -38.67028 -36.87124 -34.47067 -32.77580 -32.06040 -31.34977 -29.18717 -28.44560 -27.58613 -26.04206 -24.62161 -23.66190 -23.31388 -21.51868 -20.53379 -19.96406 -19.74772 -18.83864 -17.61511 -16.96031 -16.77111 -16.45543 -15.89222 -15.55545 -15.28367 -14.85578 -14.75594 -14.18413 -14.17609 -13.78025 -13.48211 -13.25926 -13.03638 -12.80377 -12.61452 -12.32964 -12.21055 -11.79441 -11.74563 -11.43624 -11.28647 -10.74419 -10.59276 -10.54858 -10.53710 -10.46758 -10.37910 -10.30330 -10.10908 -10.01149 -9.91212 -9.61025 -8.97492 -8.19723 -8.16515 -6.93587 -6.15942 -2.96376 -0.44422 0.40813 0.93542 1.00674 2.60625 2.71936 3.29605 3.55154 3.59172 3.73203 3.93790 4.15060 4.22988 4.62315 4.70956 4.87043 4.90191 5.02950 5.20119 5.22458 5.30497 5.41618 5.44199 5.50926 5.64230 5.72417 5.77827 5.81985 5.88396 6.00105 6.10575 6.25559 6.33589 6.38779 6.58019 6.63338 6.89983 7.00319 7.08139 7.09720 7.18564 7.35567 7.68980 7.85050 8.54505 9.03513 9.90228 10.45723 11.23648 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.027523 B = 0.002336 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.073666 B =11985.740632 C =12608.418307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.023 4.023 3 Si 1.067 2.933 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.348 4.348 8 H 0.072 0.928 9 N -0.605 5.605 10 C 0.140 3.860 11 C -0.126 4.126 12 C 0.072 3.928 13 H 0.043 0.957 14 N -0.526 5.526 15 C 0.041 3.959 16 C 0.118 3.882 17 N -0.588 5.588 18 C 0.601 3.399 19 O -0.531 6.531 20 C -0.016 4.016 21 C -0.239 4.239 22 S 0.472 5.528 23 N -0.291 5.291 24 N -0.208 5.208 25 C 0.070 3.930 26 C 0.046 3.954 27 C 0.152 3.848 28 H 0.271 0.729 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.209 0.791 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.034 0.966 42 H 0.015 0.985 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -24.435 16.068 29.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.225 4.225 3 Si 0.897 3.103 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.475 4.475 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.014 3.986 11 C -0.165 4.165 12 C -0.036 4.036 13 H 0.061 0.939 14 N -0.252 5.252 15 C -0.088 4.088 16 C -0.004 4.004 17 N -0.320 5.320 18 C 0.384 3.616 19 O -0.407 6.407 20 C -0.163 4.163 21 C -0.395 4.395 22 S 0.608 5.392 23 N -0.271 5.271 24 N -0.077 5.077 25 C -0.054 4.054 26 C -0.083 4.083 27 C 0.026 3.974 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.226 0.774 38 H 0.094 0.906 39 H 0.162 0.838 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.033 0.967 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.190 -22.446 16.996 28.240 hybrid contribution 0.797 -2.132 -1.557 2.757 sum 2.986 -24.578 15.439 29.178 Atomic orbital electron populations 1.70820 1.06759 1.31094 1.47084 1.25676 0.96276 1.00665 0.99857 0.83490 0.74733 0.75415 0.76630 1.21894 1.21690 1.22360 1.19707 1.07833 0.89046 1.30886 0.91012 1.44528 1.18866 1.09998 1.59883 1.21646 0.88877 0.96632 0.91432 1.22909 0.97898 0.96463 0.99234 1.22676 0.94092 0.93752 0.93082 0.93876 1.62016 1.25301 1.22885 1.14956 1.22477 0.96484 0.93769 0.96033 1.21867 0.93568 0.98510 0.86458 1.48031 1.41634 1.09156 1.33161 1.16736 0.82353 0.81897 0.80638 1.90829 1.34595 1.59185 1.56110 1.22759 0.97391 0.93373 1.02752 1.28904 1.07218 1.01367 1.02058 1.81571 1.10100 1.18162 1.29372 1.78701 1.24770 1.07492 1.16139 1.71274 1.04193 1.26071 1.06200 1.23148 0.92551 0.93708 0.95950 1.22406 0.94644 0.97594 0.93610 1.21160 0.95224 0.86255 0.94777 0.91700 0.91951 0.96577 0.90562 0.92225 0.94678 0.88802 0.89957 0.88664 0.77370 0.90649 0.83781 0.88957 0.94813 0.96714 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.10 12.75 55.49 0.71 -27.39 16 2 C -0.02 -0.67 5.03 -17.43 -0.09 -0.76 16 3 Si 1.07 26.01 30.04 -169.99 -5.11 20.90 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.35 -10.09 10.02 -15.06 -0.15 -10.24 16 8 H 0.07 2.08 8.03 -52.49 -0.42 1.66 16 9 N -0.60 -15.78 3.39 -170.06 -0.58 -16.36 16 10 C 0.14 3.33 5.11 -2.53 -0.01 3.31 16 11 C -0.13 -2.32 5.13 -24.58 -0.13 -2.45 16 12 C 0.07 1.27 2.64 -65.87 -0.17 1.09 16 13 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 14 N -0.53 -7.77 4.45 -224.14 -1.00 -8.77 16 15 C 0.04 0.54 5.51 -3.70 -0.02 0.52 16 16 C 0.12 1.41 6.58 -3.60 -0.02 1.38 16 17 N -0.59 -7.12 3.01 -173.72 -0.52 -7.65 16 18 C 0.60 7.36 7.68 -12.51 -0.10 7.27 16 19 O -0.53 -7.56 16.30 5.28 0.09 -7.48 16 20 C -0.02 -0.16 6.67 -83.77 -0.56 -0.72 16 21 C -0.24 -1.56 11.22 30.64 0.34 -1.22 16 22 S 0.47 2.31 23.38 -107.50 -2.51 -0.20 16 23 N -0.29 -2.60 12.49 60.35 0.75 -1.85 16 24 N -0.21 -2.14 7.89 32.74 0.26 -1.89 16 25 C 0.07 0.81 6.48 -3.60 -0.02 0.79 16 26 C 0.05 0.59 5.42 -3.70 -0.02 0.57 16 27 C 0.15 3.26 5.84 -3.05 -0.02 3.24 16 28 H 0.27 8.22 5.59 -40.82 -0.23 7.99 16 29 H 0.06 1.64 6.93 -51.93 -0.36 1.28 16 30 H 0.02 0.41 7.40 -51.93 -0.38 0.02 16 31 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 32 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.25 7.15 -51.93 -0.37 0.87 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.11 7.11 -51.93 -0.37 0.74 16 37 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.15 1.61 3.64 -133.98 -0.49 1.13 16 40 H 0.09 1.17 6.60 -51.93 -0.34 0.82 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.04 0.85 7.99 -51.93 -0.41 0.43 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -34.50 351.76 -9.55 -44.05 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.97 Total: -1.47 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.97 Total: 2.79 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.38 Total: -63.90 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.09 Total: -7.48 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.11 Total: 20.90 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.51 Total: -0.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.50 -9.55 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046046830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.410 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds