Wall clock time and date at job start Tue Mar 31 2020 19:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48503 * 109.46887 * 269.99352 * 3 2 1 5 5 H 1.48495 * 109.47466 * 29.99936 * 3 2 1 6 6 H 1.48506 * 109.46689 * 149.99787 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99991 * 197.36901 * 7 2 1 9 9 N 1.36938 * 119.99715 * 17.36784 * 7 2 1 10 10 C 1.46921 * 120.63224 * 27.66541 * 9 7 2 11 11 C 1.53192 * 108.77558 * 126.41169 * 10 9 7 12 12 C 1.53038 * 109.31439 * 54.63672 * 11 10 9 13 13 H 1.09000 * 109.46069 * 58.65529 * 12 11 10 14 14 N 1.46501 * 109.46106 * 178.61434 * 12 11 10 15 15 C 1.34771 * 120.00016 * 275.06574 * 14 12 11 16 16 O 1.21285 * 119.99983 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00050 * 179.97438 * 15 14 12 18 18 N 1.46502 * 109.47008 * 179.97438 * 17 15 14 19 19 C 1.34783 * 119.99744 * 180.02562 * 18 17 15 20 20 O 1.21688 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.46651 * 119.99900 * 180.02562 * 19 18 17 22 22 C 1.36542 * 125.99150 * 179.97438 * 21 19 18 23 23 C 1.40358 * 106.71288 * 179.97438 * 22 21 19 24 24 C 1.35128 * 107.11483 * 0.02562 * 23 22 21 25 25 O 1.33929 * 108.76845 * 359.76583 * 24 23 22 26 26 C 1.53047 * 109.53706 * 298.63536 * 12 11 10 27 27 H 1.08998 * 109.51889 * 301.39530 * 26 12 11 28 28 O 1.42897 * 109.49634 * 181.31435 * 26 12 11 29 29 C 1.46930 * 120.62962 * 207.68443 * 9 7 2 30 30 H 0.96998 * 120.00601 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.58942 * 246.20058 * 10 9 7 32 32 H 1.08997 * 109.58658 * 6.62254 * 10 9 7 33 33 H 1.09002 * 109.49998 * 174.58664 * 11 10 9 34 34 H 1.08997 * 109.49754 * 294.64830 * 11 10 9 35 35 H 0.97002 * 119.99709 * 95.07367 * 14 12 11 36 36 H 1.08990 * 109.47190 * 300.00096 * 17 15 14 37 37 H 1.08996 * 109.46800 * 60.00481 * 17 15 14 38 38 H 0.96997 * 120.00063 * 359.97438 * 18 17 15 39 39 H 1.08007 * 126.63933 * 359.93140 * 22 21 19 40 40 H 1.08004 * 126.44537 * 179.97438 * 23 22 21 41 41 H 1.08004 * 125.61932 * 180.02562 * 24 23 22 42 42 H 0.96696 * 113.99526 * 180.15807 * 28 26 12 43 43 H 1.09000 * 109.58480 * 113.80115 * 29 9 7 44 44 H 1.08997 * 109.58456 * 353.38087 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2232 0.2798 9 7 1.3724 -2.3611 -0.3530 10 6 0.2279 -2.3349 -1.2738 11 6 0.5008 -3.3053 -2.4273 12 6 0.8187 -4.6903 -1.8592 13 1 -0.0204 -5.0366 -1.2558 14 7 1.0477 -5.6288 -2.9605 15 6 0.0039 -6.2490 -3.5455 16 8 -1.1250 -6.0305 -3.1598 17 6 0.2395 -7.2140 -4.6788 18 7 -1.0441 -7.7505 -5.1381 19 6 -1.0793 -8.6393 -6.1507 20 8 -0.0450 -8.9965 -6.6830 21 6 -2.3642 -9.1759 -6.6109 22 6 -2.5418 -10.0770 -7.6213 23 6 -3.9230 -10.3075 -7.7184 24 6 -4.5204 -9.5461 -6.7754 25 8 -3.5776 -8.8694 -6.1070 26 6 2.0744 -4.6102 -0.9880 27 1 2.9085 -4.2408 -1.5844 28 8 2.3880 -5.9096 -0.4827 29 6 1.8194 -3.6546 0.1818 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6743 -2.6411 -0.7443 32 1 0.0986 -1.3267 -1.6673 33 1 -0.3800 -3.3677 -3.0664 34 1 1.3490 -2.9474 -3.0109 35 1 1.9507 -5.8039 -3.2686 36 1 0.7321 -6.6954 -5.5011 37 1 0.8721 -8.0319 -4.3339 38 1 -1.8684 -7.4666 -4.7130 39 1 -1.7692 -10.5251 -8.2286 40 1 -4.4156 -10.9683 -8.4163 41 1 -5.5830 -9.4951 -6.5885 42 1 3.1732 -5.9333 0.0811 43 1 1.0470 -4.0685 0.8300 44 1 2.7401 -3.5171 0.7488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100096607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:56 Heat of formation + Delta-G solvation = -77.626509 kcal Electronic energy + Delta-G solvation = -28682.167966 eV Core-core repulsion = 24409.203521 eV Total energy + Delta-G solvation = -4272.964445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.00773 -40.29473 -39.35689 -38.02773 -35.46987 -34.92327 -34.38115 -33.38292 -32.07716 -30.75568 -30.10656 -28.80654 -27.70128 -25.09644 -23.43849 -22.46556 -22.11458 -21.85855 -20.65964 -20.45041 -19.65890 -19.00142 -17.34961 -16.95512 -16.81498 -16.72585 -16.42587 -16.11730 -15.83147 -15.53926 -14.90530 -14.53823 -14.49822 -13.98135 -13.86354 -13.50095 -13.35993 -13.32278 -13.20810 -13.02576 -12.95225 -12.71300 -12.33419 -12.07598 -11.63688 -11.16126 -10.92311 -10.77104 -10.68334 -10.42457 -10.40400 -10.30506 -10.05485 -9.95979 -9.79245 -9.57285 -9.52381 -9.03082 -8.88113 -8.51471 -6.82866 -5.89199 -3.33598 0.71990 1.99875 2.28985 2.57557 2.73860 2.87010 3.31435 3.36062 3.38912 3.40371 4.30288 4.33301 4.45211 4.53766 4.60671 4.71833 5.08621 5.10453 5.22452 5.26821 5.27505 5.40429 5.42149 5.48030 5.53478 5.70669 5.88169 5.90682 5.94396 6.03594 6.20413 6.41943 6.43939 6.45817 6.59542 6.70917 6.73968 7.15717 7.22903 7.50419 7.56173 7.68914 7.75360 7.85674 8.19634 8.32971 9.08531 9.70844 10.26283 11.19334 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002092 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.049926 B =13381.547239 C =14037.498980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.089 0.911 14 N -0.708 5.708 15 C 0.507 3.493 16 O -0.538 6.538 17 C 0.099 3.901 18 N -0.705 5.705 19 C 0.606 3.394 20 O -0.523 6.523 21 C -0.078 4.078 22 C -0.119 4.119 23 C -0.228 4.228 24 C -0.003 4.003 25 O -0.161 6.161 26 C 0.080 3.920 27 H 0.057 0.943 28 O -0.572 6.572 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.400 0.600 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.418 0.582 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.211 0.789 42 H 0.375 0.625 43 H 0.029 0.971 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -18.466 -12.598 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.358 5.358 15 C 0.292 3.708 16 O -0.416 6.416 17 C -0.028 4.028 18 N -0.359 5.359 19 C 0.392 3.608 20 O -0.402 6.402 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.247 4.247 24 C -0.073 4.073 25 O -0.056 6.056 26 C 0.019 3.981 27 H 0.075 0.925 28 O -0.376 6.376 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.257 0.743 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.228 0.772 42 H 0.221 0.779 43 H 0.047 0.953 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.963 -18.322 -12.724 22.656 hybrid contribution 0.856 0.942 0.217 1.291 sum -3.108 -17.380 -12.507 21.636 Atomic orbital electron populations 1.70031 1.05296 1.25813 1.53087 1.25079 0.95317 0.98583 1.00456 0.86255 0.79077 0.83436 0.77757 1.21320 1.21675 1.20385 1.19167 0.92736 0.84616 1.42430 0.91463 1.44050 1.35850 1.01054 1.50227 1.20840 0.88718 0.98427 0.87566 1.22613 1.01078 0.94178 1.00850 1.21070 0.97743 0.89205 0.86069 0.89264 1.45992 1.09125 1.44533 1.36117 1.20321 0.85609 0.81286 0.83626 1.90722 1.22529 1.64241 1.64084 1.21151 0.86817 0.97879 0.96950 1.45593 1.10735 1.44090 1.35492 1.16469 0.85746 0.78836 0.79724 1.90889 1.31706 1.60292 1.57275 1.21964 0.84239 1.05414 1.01435 1.21983 0.97209 0.97294 0.97462 1.21878 0.93803 1.05451 1.03562 1.24483 0.94451 0.94514 0.93826 1.84115 1.14722 1.55622 1.51102 1.22781 0.95909 0.83193 0.96262 0.92456 1.86470 1.50880 1.30192 1.70065 1.21528 0.98858 0.87405 0.92911 0.93391 0.95774 0.88785 0.91903 0.92221 0.76628 0.87961 0.87938 0.74278 0.82132 0.82498 0.77212 0.77859 0.95291 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.19 55.49 0.62 -24.82 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 3 Si 0.91 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.81 9.59 -15.06 -0.14 -6.95 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -13.99 2.99 -172.32 -0.52 -14.51 16 10 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 11 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 12 C 0.16 2.76 2.12 -67.89 -0.14 2.61 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 N -0.71 -9.57 4.92 -53.76 -0.26 -9.83 16 15 C 0.51 7.04 7.86 -10.99 -0.09 6.96 16 16 O -0.54 -9.42 15.33 5.55 0.09 -9.34 16 17 C 0.10 1.08 6.15 -5.19 -0.03 1.05 16 18 N -0.70 -8.32 5.52 -62.81 -0.35 -8.67 16 19 C 0.61 7.51 7.79 -12.86 -0.10 7.41 16 20 O -0.52 -7.56 16.86 5.20 0.09 -7.47 16 21 C -0.08 -0.86 7.13 -36.80 -0.26 -1.12 16 22 C -0.12 -1.11 10.62 -39.40 -0.42 -1.53 16 23 C -0.23 -1.60 10.87 -39.89 -0.43 -2.04 16 24 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 25 O -0.16 -1.60 10.40 4.98 0.05 -1.55 16 26 C 0.08 1.28 3.14 -26.61 -0.08 1.20 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -8.03 13.16 -35.23 -0.46 -8.49 16 29 C 0.12 2.36 6.14 -3.71 -0.02 2.34 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.30 8.60 -40.82 -0.35 3.95 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.42 5.09 7.19 -40.82 -0.29 4.79 16 39 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.21 0.57 8.06 -52.48 -0.42 0.14 16 42 H 0.37 3.73 9.08 45.56 0.41 4.15 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -33.64 374.43 -6.88 -40.52 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.13 Total: 11.19 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -1.63 Total: 11.36 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.51 Total: -57.83 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.24 Total: -26.85 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.64 -6.88 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100096607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.106 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds