Wall clock time and date at job start Tue Mar 31 2020 20:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35124 * 125.61688 * 2 1 4 4 C 1.40368 * 107.11685 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70678 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98722 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99825 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09005 * 110.27257 * 34.30356 * 9 8 6 11 11 C 1.53992 * 110.31006 * 272.21620 * 9 8 6 12 12 N 1.47902 * 107.05829 * 239.85522 * 11 9 8 13 13 C 1.46895 * 111.00390 * 145.84361 * 12 11 9 14 14 C 1.50698 * 109.47362 * 170.00376 * 13 12 11 15 15 O 1.21291 * 120.00181 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99911 * 180.02562 * 14 13 12 17 17 C 1.37092 * 120.00058 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00214 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00361 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00107 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99718 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47052 * 89.99580 * 21 19 17 23 23 H 1.48501 * 109.47039 * 209.99541 * 21 19 17 24 24 H 1.48498 * 109.47032 * 329.99470 * 21 19 17 25 25 C 1.48542 * 105.81794 * 25.32789 * 12 11 9 26 26 C 1.54588 * 110.31088 * 156.39025 * 9 8 6 27 27 H 1.09001 * 110.72784 * 215.31865 * 26 9 8 28 28 O 1.42899 * 110.72502 * 338.60345 * 26 9 8 29 29 O 1.33931 * 125.61514 * 180.30802 * 2 1 3 30 30 H 1.08999 * 109.47144 * 90.00276 * 1 2 3 31 31 H 1.09005 * 109.47229 * 210.00238 * 1 2 3 32 32 H 1.09000 * 109.46976 * 330.00259 * 1 2 3 33 33 H 1.08001 * 126.44330 * 359.97438 * 3 2 1 34 34 H 1.07997 * 126.64250 * 180.02562 * 4 3 2 35 35 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.91658 * 359.20496 * 11 9 8 37 37 H 1.09000 * 109.91858 * 120.30597 * 11 9 8 38 38 H 1.09007 * 109.47043 * 290.00471 * 13 12 11 39 39 H 1.09001 * 109.47271 * 49.99634 * 13 12 11 40 40 H 0.97000 * 120.00277 * 359.97438 * 16 14 13 41 41 H 0.97000 * 119.99716 * 180.02562 * 20 19 17 42 42 H 1.09003 * 110.66580 * 79.22931 * 25 12 11 43 43 H 1.09000 * 110.66430 * 202.19431 * 25 12 11 44 44 H 0.96702 * 114.00033 * 179.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5824 -0.7117 -0.0004 6 6 4.7415 -1.6102 -0.0013 7 8 5.8680 -1.1500 -0.0020 8 7 4.5590 -2.9455 -0.0015 9 6 5.7168 -3.8431 -0.0030 10 1 6.5335 -3.4071 0.5725 11 6 6.1718 -4.1260 -1.4467 12 7 6.0721 -5.5870 -1.6546 13 6 5.6859 -5.8969 -3.0375 14 6 5.8318 -7.3770 -3.2802 15 8 6.2200 -8.1024 -2.3890 16 7 5.5320 -7.8946 -4.4880 17 6 5.6653 -9.2410 -4.7090 18 1 6.0109 -9.8870 -3.9154 19 6 5.3558 -9.7748 -5.9540 20 7 5.4840 -11.0654 -6.1659 21 14 4.7587 -8.6576 -7.3268 22 1 5.9232 -8.1631 -8.1045 23 1 3.8510 -9.4172 -8.2237 24 1 4.0272 -7.5043 -6.7437 25 6 5.0431 -6.0632 -0.6950 26 6 5.3277 -5.2219 0.5777 27 1 6.1543 -5.6484 1.1460 28 8 4.1559 -5.1165 1.3888 29 8 2.2870 -1.0888 -0.0059 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9613 2.1260 -0.0004 34 1 4.5113 1.2703 -0.0004 35 1 3.6610 -3.3123 -0.0013 36 1 5.5214 -3.6057 -2.1497 37 1 7.2025 -3.7982 -1.5822 38 1 4.6489 -5.6026 -3.1997 39 1 6.3305 -5.3504 -3.7260 40 1 5.2220 -7.3145 -5.2009 41 1 5.2683 -11.4379 -7.0351 42 1 4.0412 -5.8614 -1.0738 43 1 5.1694 -7.1266 -0.4919 44 1 3.8694 -5.9547 1.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219136102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:29 Heat of formation + Delta-G solvation = -81.168472 kcal Electronic energy + Delta-G solvation = -28874.453433 eV Core-core repulsion = 24601.335396 eV Total energy + Delta-G solvation = -4273.118036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.03241 -40.36019 -38.95373 -37.98185 -35.94981 -34.57083 -33.91349 -33.53093 -32.39259 -31.70781 -30.53092 -28.45526 -27.53083 -26.46376 -24.14340 -22.92103 -21.95880 -21.51009 -20.79511 -20.44717 -19.39501 -18.76421 -18.37018 -17.55242 -16.81523 -16.35560 -16.08911 -15.90036 -15.40242 -15.13191 -14.98257 -14.73783 -14.49604 -14.07292 -13.69699 -13.64057 -13.53279 -13.38485 -13.32072 -13.16617 -13.09581 -12.96249 -12.47331 -12.35868 -12.20824 -12.07004 -11.67332 -11.47593 -11.18805 -10.99394 -10.61631 -10.53113 -10.37170 -10.12485 -9.99700 -9.57963 -9.44793 -8.82373 -8.67865 -8.21128 -8.14472 -6.33016 -3.84459 0.73359 1.97630 2.26026 2.84810 2.92480 3.00627 3.05534 3.13575 3.65407 3.71631 4.07569 4.11256 4.21385 4.40201 4.48642 4.55925 4.56359 4.84486 4.89249 4.95925 5.01204 5.14076 5.17457 5.18870 5.27846 5.30898 5.47085 5.49814 5.58843 5.60496 5.67154 5.77043 5.83185 5.90411 6.01674 6.07456 6.18089 6.52482 6.87688 6.95167 7.24426 7.38270 7.55978 7.85063 8.11873 8.58048 8.93110 9.40325 9.80892 10.80061 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.002470 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.259515 B =11331.881959 C =12247.066640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.020 3.980 3 C -0.225 4.225 4 C -0.117 4.117 5 C -0.079 4.079 6 C 0.604 3.396 7 O -0.523 6.523 8 N -0.698 5.698 9 C 0.144 3.856 10 H 0.107 0.893 11 C 0.023 3.977 12 N -0.484 5.484 13 C 0.034 3.966 14 C 0.454 3.546 15 O -0.559 6.559 16 N -0.592 5.592 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.008 3.992 26 C 0.093 3.907 27 H 0.089 0.911 28 O -0.562 6.562 29 O -0.161 6.161 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.412 0.588 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.049 0.951 43 H 0.106 0.894 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.147 23.484 12.413 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 C -0.244 4.244 4 C -0.137 4.137 5 C -0.131 4.131 6 C 0.390 3.610 7 O -0.401 6.401 8 N -0.349 5.349 9 C 0.039 3.961 10 H 0.125 0.875 11 C -0.106 4.106 12 N -0.209 5.209 13 C -0.098 4.098 14 C 0.240 3.760 15 O -0.441 6.441 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.120 4.120 26 C 0.033 3.967 27 H 0.107 0.893 28 O -0.367 6.367 29 O -0.057 6.057 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.124 0.876 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.625 23.144 12.790 27.814 hybrid contribution -1.686 0.562 -1.458 2.298 sum -10.312 23.706 11.332 28.226 Atomic orbital electron populations 1.20434 0.84495 1.04579 1.04083 1.22856 0.94352 0.84089 1.01986 1.21599 0.92333 0.99837 1.10659 1.21955 0.98671 0.92905 1.00214 1.22020 0.81873 0.94601 1.14629 1.16553 0.86075 0.81588 0.76805 1.90886 1.21974 1.76138 1.51080 1.45715 1.10914 1.04764 1.73516 1.21929 0.88969 0.88688 0.96551 0.87481 1.23432 1.02727 0.89532 0.94893 1.64454 1.43413 1.09567 1.03492 1.22124 0.99780 0.97078 0.90768 1.19553 0.84279 0.88531 0.83662 1.90541 1.49332 1.60822 1.43373 1.42207 1.60713 1.09052 1.11155 1.19414 1.42519 0.81612 0.99730 0.86258 1.25034 0.97766 0.95878 0.97483 1.69620 1.47823 1.10699 1.23975 0.86679 0.79475 0.80535 0.82731 1.19564 1.20178 1.19597 1.24062 0.93709 1.02156 0.92088 1.23068 0.88495 0.93974 0.91143 0.89267 1.86360 1.45293 1.37387 1.67705 1.84022 1.15978 1.34965 1.70751 0.89480 0.90032 0.88892 0.82622 0.82177 0.75195 0.92859 0.88748 0.93028 0.88949 0.79745 0.91607 0.93309 0.87625 0.76465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.41 36.01 0.37 0.03 16 2 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 3 C -0.23 -1.83 10.77 -39.89 -0.43 -2.26 16 4 C -0.12 -1.19 10.62 -39.39 -0.42 -1.61 16 5 C -0.08 -0.92 7.13 -36.80 -0.26 -1.18 16 6 C 0.60 7.81 7.78 -12.86 -0.10 7.71 16 7 O -0.52 -8.03 16.54 5.20 0.09 -7.94 16 8 N -0.70 -8.14 4.63 -53.81 -0.25 -8.39 16 9 C 0.14 1.72 3.27 -66.58 -0.22 1.50 16 10 H 0.11 1.31 7.60 -51.93 -0.39 0.91 16 11 C 0.02 0.30 6.46 -2.76 -0.02 0.28 16 12 N -0.48 -7.53 4.91 -231.72 -1.14 -8.66 16 13 C 0.03 0.57 5.19 -4.98 -0.03 0.55 16 14 C 0.45 10.17 7.61 -10.98 -0.08 10.08 16 15 O -0.56 -14.59 14.64 5.55 0.08 -14.51 16 16 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 17 C -0.30 -8.52 10.16 -14.94 -0.15 -8.67 16 18 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 21 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 25 C 0.01 0.11 5.67 -1.75 -0.01 0.10 16 26 C 0.09 1.05 4.36 -24.74 -0.11 0.94 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 O -0.56 -5.47 12.08 -35.23 -0.43 -5.89 16 29 O -0.16 -1.70 10.40 4.98 0.05 -1.65 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.41 4.54 7.57 -40.82 -0.31 4.23 16 36 H 0.05 0.68 7.56 -51.93 -0.39 0.29 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.77 7.83 -51.93 -0.41 0.36 16 39 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 40 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.05 0.67 7.81 -51.93 -0.41 0.26 16 43 H 0.11 1.74 7.10 -51.93 -0.37 1.37 16 44 H 0.39 2.37 9.12 45.56 0.42 2.78 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -35.24 373.92 -6.79 -42.03 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.80 Total: 8.41 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.67 Total: -55.91 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.21 Total: -29.99 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.24 -6.79 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219136102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.138 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds