Wall clock time and date at job start Tue Mar 31 2020 19:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47184 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47202 * 300.00063 * 3 2 1 6 6 H 1.48496 * 109.47196 * 60.00034 * 3 2 1 7 7 C 1.38948 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00621 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00302 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99631 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00520 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47358 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99825 * 180.02562 * 13 12 10 15 15 H 1.08991 * 109.47561 * 35.00220 * 14 13 12 16 16 C 1.53000 * 109.47021 * 275.00071 * 14 13 12 17 17 O 1.42903 * 109.47357 * 295.00323 * 16 14 13 18 18 C 1.53002 * 109.47001 * 155.00467 * 14 13 12 19 19 N 1.46505 * 109.47017 * 304.99893 * 18 14 13 20 20 C 1.34774 * 119.99754 * 180.02562 * 19 18 14 21 21 O 1.21771 * 120.00346 * 0.02562 * 20 19 18 22 22 C 1.41555 * 119.99391 * 179.97438 * 20 19 18 23 23 C 1.35628 * 119.99777 * 173.24242 * 22 20 19 24 24 C 1.41608 * 119.99764 * 351.25558 * 23 22 20 25 25 C 1.37953 * 126.09960 * 139.49462 * 24 23 22 26 26 C 1.40318 * 106.52671 * 179.72954 * 25 24 23 27 27 C 1.35151 * 107.20744 * 0.40886 * 26 25 24 28 28 O 1.34024 * 109.03196 * 359.58507 * 27 26 25 29 29 H 0.96995 * 119.99558 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00305 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47046 * 60.00027 * 12 10 9 32 32 H 1.08996 * 109.47306 * 300.00169 * 12 10 9 33 33 H 1.00901 * 110.99542 * 56.04708 * 13 12 10 34 34 H 1.09005 * 109.47081 * 55.00105 * 16 14 13 35 35 H 1.08997 * 109.47387 * 175.00277 * 16 14 13 36 36 H 0.96698 * 114.00482 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46818 * 184.99945 * 18 14 13 38 38 H 1.09003 * 109.47370 * 64.99874 * 18 14 13 39 39 H 0.97001 * 119.99571 * 359.97438 * 19 18 14 40 40 H 1.07993 * 120.00509 * 353.24404 * 22 20 19 41 41 H 1.07994 * 120.00092 * 171.26353 * 23 22 20 42 42 H 1.08000 * 126.73876 * 0.02562 * 25 24 23 43 43 H 1.08000 * 126.39810 * 180.28606 * 26 25 24 44 44 H 1.07998 * 125.48997 * 179.84645 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8630 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4981 -7.2708 -0.0008 15 1 0.5847 -7.1888 -0.5898 16 6 1.1451 -7.6596 1.4363 17 8 2.3460 -7.8808 2.1787 18 6 2.4040 -8.3423 -0.6110 19 7 2.8389 -7.9135 -1.9427 20 6 3.6490 -8.7042 -2.6741 21 8 4.0191 -9.7752 -2.2283 22 6 4.0686 -8.2900 -3.9610 23 6 4.9900 -9.0173 -4.6404 24 6 5.6680 -10.0806 -3.9962 25 6 5.9693 -11.3071 -4.5511 26 6 6.6448 -12.0377 -3.5617 27 6 6.7195 -11.2514 -2.4650 28 8 6.1349 -10.0749 -2.7301 29 1 -0.4849 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6168 -4.9209 -0.8897 32 1 0.6175 -4.9205 0.8902 33 1 2.8339 -5.9124 0.7802 34 1 0.5740 -6.8554 1.9004 35 1 0.5487 -8.5719 1.4298 36 1 2.1979 -8.1310 3.1009 37 1 1.8538 -9.2797 -0.6927 38 1 3.2760 -8.4872 0.0268 39 1 2.5431 -7.0608 -2.2982 40 1 3.6552 -7.3951 -4.4018 41 1 5.2068 -8.7853 -5.6727 42 1 5.7358 -11.6381 -5.5522 43 1 7.0310 -13.0417 -3.6579 44 1 7.1802 -11.5252 -1.5274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331663006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:14 Heat of formation + Delta-G solvation = -104.698924 kcal Electronic energy + Delta-G solvation = -28462.959033 eV Core-core repulsion = 24188.820639 eV Total energy + Delta-G solvation = -4274.138393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.27172 -40.81842 -40.17796 -38.87662 -36.48521 -35.95079 -35.06912 -34.78284 -33.69233 -33.24916 -31.40551 -29.67672 -27.84027 -26.99337 -25.66869 -24.37119 -22.51549 -21.94920 -21.87630 -21.11385 -20.31469 -19.91329 -18.85201 -18.47327 -17.88340 -17.47200 -16.90377 -16.83133 -16.67885 -16.40626 -16.27487 -15.84721 -15.71824 -15.25245 -15.23129 -14.83986 -14.74210 -14.49709 -13.95771 -13.94649 -13.66723 -13.54915 -13.36920 -13.30219 -13.11461 -12.97210 -12.89528 -12.58412 -12.39664 -12.25591 -12.11859 -11.50580 -11.05411 -10.96771 -10.89625 -10.65207 -10.33592 -9.99792 -9.88487 -9.33566 -8.86061 -8.46223 -5.94176 -0.31779 1.23005 1.36610 1.42330 1.55975 1.80931 2.07520 2.29075 2.35667 2.44089 2.62203 2.86877 3.21421 3.34427 3.66084 3.84353 3.89152 4.02254 4.13395 4.19543 4.25434 4.30406 4.35489 4.44375 4.53698 4.54475 4.62137 4.68942 4.78598 4.86203 4.90998 5.02014 5.11157 5.18031 5.41220 5.42315 5.59016 5.72664 5.90203 6.11204 6.33240 6.34766 6.61819 6.71680 6.88225 7.14573 7.39041 7.58426 8.14503 8.71219 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.002274 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.442793 B =12308.869424 C =13518.783456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.670 5.670 14 C 0.079 3.921 15 H 0.119 0.881 16 C 0.048 3.952 17 O -0.589 6.589 18 C 0.146 3.854 19 N -0.704 5.704 20 C 0.525 3.475 21 O -0.573 6.573 22 C -0.215 4.215 23 C 0.003 3.997 24 C -0.017 4.017 25 C -0.190 4.190 26 C -0.231 4.231 27 C -0.040 4.040 28 O -0.164 6.164 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.195 0.805 42 H 0.172 0.828 43 H 0.170 0.830 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -21.497 -5.840 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.303 5.303 14 C -0.031 4.031 15 H 0.137 0.863 16 C -0.032 4.032 17 O -0.398 6.398 18 C 0.021 3.979 19 N -0.354 5.354 20 C 0.316 3.684 21 O -0.456 6.456 22 C -0.235 4.235 23 C -0.016 4.016 24 C -0.067 4.067 25 C -0.209 4.209 26 C -0.250 4.250 27 C -0.110 4.110 28 O -0.058 6.058 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.248 0.752 40 H 0.183 0.817 41 H 0.212 0.788 42 H 0.190 0.810 43 H 0.187 0.813 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.370 -21.645 -6.546 22.738 hybrid contribution -0.811 1.027 1.591 2.060 sum 1.559 -20.619 -4.955 21.263 Atomic orbital electron populations 1.69668 1.06682 1.29153 1.50523 1.25987 0.96543 1.02263 0.96437 0.84910 0.77994 0.77359 0.78321 1.20027 1.19553 1.19693 1.19652 0.92584 0.84109 1.49674 0.90597 1.41921 1.09318 1.04641 1.65186 1.20925 0.88229 0.86227 0.82067 1.90522 1.16069 1.87966 1.56484 1.21628 0.93947 0.87791 1.03429 1.60081 1.18287 1.00054 1.51839 1.22079 0.97499 0.88419 0.95106 0.86289 1.22846 0.87040 1.01108 0.92156 1.86471 1.32197 1.92466 1.28625 1.21047 0.97870 0.96025 0.82924 1.45772 1.49693 1.22581 1.17392 1.17664 0.79176 0.84650 0.86938 1.90820 1.57258 1.24287 1.73242 1.22508 1.02339 1.03138 0.95504 1.21169 0.91059 0.89156 1.00261 1.20235 1.04753 0.98788 0.82896 1.22525 1.02841 0.93364 1.02128 1.21984 1.06465 1.02716 0.93803 1.24755 1.00515 0.83883 1.01803 1.84267 1.56371 1.35945 1.29253 0.91345 0.76901 0.86814 0.91540 0.83279 0.92496 0.90610 0.75343 0.91115 0.93567 0.75150 0.81694 0.78826 0.81020 0.81280 0.76622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.33 -18.51 9.68 84.04 0.81 -17.70 16 8 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 9 N -0.57 -28.48 5.29 -306.99 -1.62 -30.10 16 10 C 0.44 20.06 7.82 87.66 0.69 20.74 16 11 O -0.62 -34.27 15.78 -3.08 -0.05 -34.32 16 12 C 0.06 1.98 5.96 85.56 0.51 2.49 16 13 N -0.67 -19.87 5.31 -495.58 -2.63 -22.50 16 14 C 0.08 1.70 2.57 44.92 0.12 1.81 16 15 H 0.12 1.97 7.80 -2.39 -0.02 1.95 16 16 C 0.05 0.86 6.72 71.98 0.48 1.34 16 17 O -0.59 -12.55 12.05 -148.98 -1.80 -14.35 16 18 C 0.15 3.70 5.26 86.38 0.45 4.16 16 19 N -0.70 -18.30 5.38 -472.17 -2.54 -20.84 16 20 C 0.52 15.16 7.36 85.06 0.63 15.79 16 21 O -0.57 -20.22 12.44 19.12 0.24 -19.98 16 22 C -0.21 -4.71 9.85 22.48 0.22 -4.49 16 23 C 0.00 0.06 9.95 22.50 0.22 0.28 16 24 C -0.02 -0.43 5.30 23.03 0.12 -0.31 16 25 C -0.19 -4.06 10.90 22.71 0.25 -3.82 16 26 C -0.23 -4.82 10.87 22.06 0.24 -4.58 16 27 C -0.04 -0.96 12.06 67.11 0.81 -0.15 16 28 O -0.16 -5.02 7.85 17.51 0.14 -4.88 16 29 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.40 18.53 7.90 -92.70 -0.73 17.80 16 31 H 0.11 2.93 8.05 -2.38 -0.02 2.91 16 32 H 0.07 1.78 7.36 -2.39 -0.02 1.76 16 33 H 0.35 12.27 7.64 -89.69 -0.69 11.59 16 34 H 0.06 0.97 7.35 -2.38 -0.02 0.95 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.40 4.88 9.12 -74.06 -0.68 4.21 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.47 7.39 -2.39 -0.02 1.45 16 39 H 0.41 9.89 8.10 -92.71 -0.75 9.14 16 40 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 42 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 43 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.22 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -80.75 380.58 -1.70 -82.44 By element: Atomic # 1 Polarization: 54.61 SS G_CDS: -1.76 Total: 52.85 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.02 Total: 15.38 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -6.51 Total: -121.75 kcal Atomic # 8 Polarization: -72.07 SS G_CDS: -1.47 Total: -73.54 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -80.75 -1.70 -82.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331663006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.257 kcal (2) G-P(sol) polarization free energy of solvation -80.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds