Wall clock time and date at job start Tue Mar 31 2020 19:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00262 * 2 1 4 4 H 1.48502 * 109.47144 * 270.00293 * 3 2 1 5 5 H 1.48496 * 109.46751 * 30.00462 * 3 2 1 6 6 H 1.48506 * 109.46905 * 150.00173 * 3 2 1 7 7 C 1.38952 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99842 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99995 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00544 * 359.72070 * 10 9 7 12 12 C 1.50700 * 119.99986 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47277 * 179.72504 * 12 10 9 14 14 C 1.46903 * 111.00123 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.46423 * 324.99475 * 14 13 12 16 16 C 1.52998 * 109.47589 * 84.99529 * 14 13 12 17 17 O 1.42900 * 109.46763 * 65.00031 * 16 14 13 18 18 C 1.52996 * 109.47203 * 205.00194 * 14 13 12 19 19 N 1.46502 * 109.47220 * 54.99093 * 18 14 13 20 20 C 1.34778 * 120.00013 * 180.02562 * 19 18 14 21 21 O 1.21776 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.41546 * 119.99868 * 180.02562 * 20 19 18 23 23 C 1.35634 * 119.99637 * 186.33782 * 22 20 19 24 24 C 1.41605 * 120.00330 * 8.85614 * 23 22 20 25 25 C 1.37944 * 126.10494 * 219.80008 * 24 23 22 26 26 C 1.40325 * 106.52495 * 179.85245 * 25 24 23 27 27 C 1.35154 * 107.20563 * 0.40610 * 26 25 24 28 28 O 1.34019 * 109.03178 * 359.74845 * 27 26 25 29 29 H 0.96998 * 119.99481 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99677 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47504 * 299.72777 * 12 10 9 32 32 H 1.09001 * 109.46929 * 59.72347 * 12 10 9 33 33 H 1.00893 * 111.00017 * 56.04659 * 13 12 10 34 34 H 1.08994 * 109.47319 * 185.00332 * 16 14 13 35 35 H 1.08998 * 109.47103 * 305.00167 * 16 14 13 36 36 H 0.96697 * 113.99702 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.47229 * 174.99555 * 18 14 13 38 38 H 1.09001 * 109.46782 * 294.99575 * 18 14 13 39 39 H 0.96997 * 119.99888 * 0.02562 * 19 18 14 40 40 H 1.07998 * 120.00503 * 6.33654 * 22 20 19 41 41 H 1.08007 * 119.99713 * 188.85401 * 23 22 20 42 42 H 1.07996 * 126.73362 * 359.97438 * 25 24 23 43 43 H 1.07999 * 126.39452 * 180.15153 * 26 25 24 44 44 H 1.07994 * 125.47804 * 179.71860 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0058 12 6 1.2436 -4.8629 -0.0022 13 7 2.1981 -5.9796 -0.0087 14 6 1.4978 -7.2709 -0.0101 15 1 0.5867 -7.1906 0.5829 16 6 1.1391 -7.6551 -1.4469 17 8 2.3370 -7.8740 -2.1946 18 6 2.4059 -8.3442 0.5933 19 7 2.8460 -7.9196 1.9246 20 6 3.6597 -8.7122 2.6500 21 8 4.0294 -9.7810 2.1986 22 6 4.0844 -8.3021 3.9365 23 6 5.0029 -9.0357 4.6132 24 6 5.6749 -10.1008 3.9657 25 6 5.9827 -11.3252 4.5215 26 6 6.6400 -12.0622 3.5246 27 6 6.7142 -11.2747 2.4287 28 8 6.1336 -10.0969 2.6967 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6202 -4.9231 0.8900 32 1 0.6136 -4.9183 -0.8899 33 1 2.8359 -5.9146 0.7704 34 1 0.5426 -8.5674 -1.4410 35 1 0.5662 -6.8496 -1.9062 36 1 2.1852 -8.1221 -3.1168 37 1 1.8561 -9.2818 0.6743 38 1 3.2754 -8.4871 -0.0483 39 1 2.5517 -7.0681 2.2840 40 1 3.6772 -7.4052 4.3793 41 1 5.2217 -8.8075 5.6459 42 1 5.7597 -11.6529 5.5261 43 1 7.0196 -13.0690 3.6172 44 1 7.1687 -11.5502 1.4885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331663019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:18 Heat of formation + Delta-G solvation = -67.762161 kcal Electronic energy + Delta-G solvation = -28475.281004 eV Core-core repulsion = 24202.744309 eV Total energy + Delta-G solvation = -4272.536695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.45991 -39.98492 -38.55560 -37.54599 -35.59962 -34.29939 -34.03303 -33.56929 -32.88762 -31.26755 -30.33945 -28.86320 -26.34555 -26.14275 -24.08535 -23.49644 -21.71813 -21.18447 -20.57298 -19.68207 -19.26504 -18.14850 -17.88988 -17.47002 -16.73347 -16.56714 -15.92796 -15.62947 -15.41421 -15.35761 -14.66054 -14.58906 -14.40263 -14.13623 -13.96494 -13.67651 -13.64495 -13.35564 -13.11617 -12.91456 -12.62339 -12.49958 -12.39207 -12.15996 -11.80551 -11.58233 -11.48164 -11.07327 -10.99578 -10.40865 -10.27305 -10.23757 -10.04996 -9.91276 -9.82690 -9.52884 -9.06777 -8.47580 -8.10608 -8.07964 -7.98158 -6.43922 -3.84597 0.41955 2.03876 2.58635 3.10994 3.16541 3.19808 3.25406 3.31250 3.38284 3.87343 4.00651 4.23077 4.33728 4.57838 4.68792 4.78119 4.91743 4.94852 4.96929 5.16289 5.17621 5.22075 5.30360 5.37656 5.51645 5.60421 5.62693 5.64081 5.71517 5.84740 5.86206 5.90765 6.05934 6.14411 6.24274 6.35693 6.44251 7.13800 7.14179 7.40366 7.53437 7.56495 7.75460 8.04154 8.19122 8.59021 9.16006 9.51753 10.03369 10.73787 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.002272 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.152742 B =12322.153821 C =13528.564192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.580 6.580 12 C 0.048 3.952 13 N -0.653 5.653 14 C 0.076 3.924 15 H 0.060 0.940 16 C 0.092 3.908 17 O -0.553 6.553 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.541 3.459 21 O -0.527 6.527 22 C -0.204 4.204 23 C 0.003 3.997 24 C 0.009 3.991 25 C -0.184 4.184 26 C -0.229 4.229 27 C -0.015 4.015 28 O -0.131 6.131 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.349 0.651 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.372 0.628 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.398 0.602 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -21.438 6.819 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.289 5.289 14 C -0.035 4.035 15 H 0.077 0.923 16 C 0.012 3.988 17 O -0.357 6.357 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.331 3.669 21 O -0.405 6.405 22 C -0.224 4.224 23 C -0.017 4.017 24 C -0.042 4.042 25 C -0.203 4.203 26 C -0.248 4.248 27 C -0.086 4.086 28 O -0.024 6.024 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.218 0.782 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.157 0.843 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.857 -21.604 6.184 22.800 hybrid contribution -1.214 1.033 0.554 1.687 sum 2.643 -20.571 6.738 21.807 Atomic orbital electron populations 1.69610 1.05930 1.28154 1.50661 1.25263 0.95646 0.99732 0.97329 0.85854 0.79219 0.80766 0.78436 1.20381 1.20947 1.19412 1.19704 0.93378 0.82204 1.47527 0.87918 1.41857 1.09155 1.04591 1.64447 1.19763 0.88405 0.84642 0.84644 1.90547 1.13687 1.86969 1.55128 1.21791 0.94387 0.91238 1.01072 1.59999 1.18176 0.98919 1.51770 1.21882 0.96058 0.90290 0.95267 0.92270 1.22066 0.86927 0.98384 0.91404 1.86615 1.30792 1.92228 1.26076 1.21417 0.99650 0.96187 0.82650 1.45991 1.50837 1.22751 1.18433 1.17080 0.79167 0.84865 0.85824 1.90867 1.55487 1.22538 1.71639 1.22312 1.01588 1.01993 0.96533 1.20634 0.92017 0.90277 0.98772 1.19584 1.04225 0.97322 0.83056 1.22123 1.03450 0.93889 1.00857 1.21607 1.07238 1.01727 0.94191 1.24163 1.00070 0.83969 1.00359 1.84302 1.55692 1.34581 1.27783 0.91884 0.77508 0.93915 0.89609 0.82891 0.93744 0.93082 0.78175 0.91258 0.89183 0.76743 0.84283 0.82696 0.83519 0.83710 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.24 7.82 -10.99 -0.09 10.16 16 11 O -0.58 -15.76 15.78 5.54 0.09 -15.67 16 12 C 0.05 0.81 5.96 -4.97 -0.03 0.78 16 13 N -0.65 -10.48 5.87 -107.99 -0.63 -11.11 16 14 C 0.08 0.92 2.60 -67.71 -0.18 0.75 16 15 H 0.06 0.62 7.80 -51.93 -0.40 0.21 16 16 C 0.09 1.02 6.80 37.16 0.25 1.28 16 17 O -0.55 -7.08 12.64 -35.23 -0.45 -7.52 16 18 C 0.12 1.58 5.20 -4.04 -0.02 1.55 16 19 N -0.73 -8.77 4.98 -63.25 -0.31 -9.08 16 20 C 0.54 7.22 7.36 -15.00 -0.11 7.11 16 21 O -0.53 -8.61 12.41 -19.72 -0.24 -8.86 16 22 C -0.20 -2.10 9.85 -39.25 -0.39 -2.48 16 23 C 0.00 0.03 9.95 -39.23 -0.39 -0.36 16 24 C 0.01 0.11 5.32 -38.41 -0.20 -0.10 16 25 C -0.18 -1.96 10.90 -38.90 -0.42 -2.39 16 26 C -0.23 -2.37 10.87 -39.89 -0.43 -2.80 16 27 C -0.02 -0.17 12.06 29.64 0.36 0.19 16 28 O -0.13 -1.86 7.81 -20.15 -0.16 -2.01 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 31 H 0.04 0.62 8.06 -51.93 -0.42 0.21 16 32 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 33 H 0.35 5.82 6.41 -39.30 -0.25 5.57 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.58 7.35 -51.93 -0.38 0.19 16 36 H 0.37 3.05 9.12 45.56 0.42 3.47 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.40 7.39 -51.93 -0.38 1.01 16 39 H 0.40 4.20 7.33 -40.82 -0.30 3.90 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -36.98 379.34 -7.14 -44.12 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -4.90 Total: 20.41 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.89 Total: 5.75 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.28 Total: -57.85 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.76 Total: -34.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.98 -7.14 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331663019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.643 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds