Wall clock time and date at job start Tue Mar 31 2020 19:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00262 * 2 1 4 4 H 1.48502 * 109.47144 * 270.00293 * 3 2 1 5 5 H 1.48496 * 109.46751 * 30.00462 * 3 2 1 6 6 H 1.48506 * 109.46905 * 150.00173 * 3 2 1 7 7 C 1.38952 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99842 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99995 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00544 * 359.72070 * 10 9 7 12 12 C 1.50700 * 119.99986 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47277 * 179.72504 * 12 10 9 14 14 C 1.46903 * 111.00123 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.46423 * 324.99475 * 14 13 12 16 16 C 1.52998 * 109.47589 * 84.99529 * 14 13 12 17 17 O 1.42900 * 109.46763 * 65.00031 * 16 14 13 18 18 C 1.52996 * 109.47203 * 205.00194 * 14 13 12 19 19 N 1.46502 * 109.47220 * 54.99093 * 18 14 13 20 20 C 1.34778 * 120.00013 * 180.02562 * 19 18 14 21 21 O 1.21776 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.41546 * 119.99868 * 180.02562 * 20 19 18 23 23 C 1.35634 * 119.99637 * 186.33782 * 22 20 19 24 24 C 1.41605 * 120.00330 * 8.85614 * 23 22 20 25 25 C 1.37944 * 126.10494 * 219.80008 * 24 23 22 26 26 C 1.40325 * 106.52495 * 179.85245 * 25 24 23 27 27 C 1.35154 * 107.20563 * 0.40610 * 26 25 24 28 28 O 1.34019 * 109.03178 * 359.74845 * 27 26 25 29 29 H 0.96998 * 119.99481 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99677 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47504 * 299.72777 * 12 10 9 32 32 H 1.09001 * 109.46929 * 59.72347 * 12 10 9 33 33 H 1.00893 * 111.00017 * 56.04659 * 13 12 10 34 34 H 1.08994 * 109.47319 * 185.00332 * 16 14 13 35 35 H 1.08998 * 109.47103 * 305.00167 * 16 14 13 36 36 H 0.96697 * 113.99702 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.47229 * 174.99555 * 18 14 13 38 38 H 1.09001 * 109.46782 * 294.99575 * 18 14 13 39 39 H 0.96997 * 119.99888 * 0.02562 * 19 18 14 40 40 H 1.07998 * 120.00503 * 6.33654 * 22 20 19 41 41 H 1.08007 * 119.99713 * 188.85401 * 23 22 20 42 42 H 1.07996 * 126.73362 * 359.97438 * 25 24 23 43 43 H 1.07999 * 126.39452 * 180.15153 * 26 25 24 44 44 H 1.07994 * 125.47804 * 179.71860 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0058 12 6 1.2436 -4.8629 -0.0022 13 7 2.1981 -5.9796 -0.0087 14 6 1.4978 -7.2709 -0.0101 15 1 0.5867 -7.1906 0.5829 16 6 1.1391 -7.6551 -1.4469 17 8 2.3370 -7.8740 -2.1946 18 6 2.4059 -8.3442 0.5933 19 7 2.8460 -7.9196 1.9246 20 6 3.6597 -8.7122 2.6500 21 8 4.0294 -9.7810 2.1986 22 6 4.0844 -8.3021 3.9365 23 6 5.0029 -9.0357 4.6132 24 6 5.6749 -10.1008 3.9657 25 6 5.9827 -11.3252 4.5215 26 6 6.6400 -12.0622 3.5246 27 6 6.7142 -11.2747 2.4287 28 8 6.1336 -10.0969 2.6967 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.6202 -4.9231 0.8900 32 1 0.6136 -4.9183 -0.8899 33 1 2.8359 -5.9146 0.7704 34 1 0.5426 -8.5674 -1.4410 35 1 0.5662 -6.8496 -1.9062 36 1 2.1852 -8.1221 -3.1168 37 1 1.8561 -9.2818 0.6743 38 1 3.2754 -8.4871 -0.0483 39 1 2.5517 -7.0681 2.2840 40 1 3.6772 -7.4052 4.3793 41 1 5.2217 -8.8075 5.6459 42 1 5.7597 -11.6529 5.5261 43 1 7.0196 -13.0690 3.6172 44 1 7.1687 -11.5502 1.4885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331663019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:17 Heat of formation + Delta-G solvation = -98.816181 kcal Electronic energy + Delta-G solvation = -28476.627607 eV Core-core repulsion = 24202.744309 eV Total energy + Delta-G solvation = -4273.883298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.30311 -40.98888 -40.17852 -38.78395 -36.61920 -35.97043 -35.08235 -34.81096 -33.72153 -33.25950 -31.47946 -29.71596 -27.93289 -27.09644 -25.74016 -24.41856 -22.54437 -22.06676 -21.58905 -21.15009 -20.47355 -19.91289 -18.99401 -18.42138 -17.96085 -17.53896 -17.13444 -16.81161 -16.59516 -16.48573 -16.34646 -15.90078 -15.66322 -15.28941 -15.09846 -14.86679 -14.66746 -14.62217 -14.09218 -13.98396 -13.69503 -13.55086 -13.42432 -13.38485 -13.14286 -13.04839 -12.90591 -12.68358 -12.41145 -12.12076 -11.98160 -11.50840 -11.10169 -10.99843 -10.78419 -10.68484 -10.34322 -10.07711 -10.00895 -9.32735 -8.89935 -8.46526 -5.94742 -0.37700 1.19847 1.37979 1.42191 1.54458 1.77808 2.05629 2.25419 2.29118 2.31089 2.54284 2.84857 3.20988 3.44751 3.46126 3.77897 3.85863 4.02216 4.13983 4.16548 4.22323 4.30240 4.38055 4.45386 4.49409 4.52476 4.60284 4.69847 4.76396 4.82246 4.88193 5.01214 5.07811 5.14123 5.36434 5.40223 5.41563 5.69583 5.87983 6.09420 6.31559 6.31946 6.48496 6.60935 7.05423 7.13543 7.23749 7.56970 8.12950 8.70676 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.002272 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.152742 B =12322.153821 C =13528.564192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.673 5.673 14 C 0.079 3.921 15 H 0.089 0.911 16 C 0.087 3.913 17 O -0.582 6.582 18 C 0.134 3.866 19 N -0.722 5.722 20 C 0.531 3.469 21 O -0.564 6.564 22 C -0.221 4.221 23 C 0.011 3.989 24 C -0.022 4.022 25 C -0.186 4.186 26 C -0.232 4.232 27 C -0.038 4.038 28 O -0.164 6.164 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.342 0.658 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.389 0.611 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.406 0.594 40 H 0.169 0.831 41 H 0.197 0.803 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -21.826 7.951 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.309 5.309 14 C -0.030 4.030 15 H 0.106 0.894 16 C 0.009 3.991 17 O -0.389 6.389 18 C 0.010 3.990 19 N -0.375 5.375 20 C 0.322 3.678 21 O -0.446 6.446 22 C -0.242 4.242 23 C -0.008 4.008 24 C -0.072 4.072 25 C -0.205 4.205 26 C -0.251 4.251 27 C -0.107 4.107 28 O -0.058 6.058 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.238 0.762 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.242 0.758 40 H 0.186 0.814 41 H 0.214 0.786 42 H 0.191 0.809 43 H 0.187 0.813 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.670 -21.995 7.304 23.329 hybrid contribution -0.816 1.039 0.175 1.332 sum 1.854 -20.956 7.480 22.328 Atomic orbital electron populations 1.69661 1.06705 1.29258 1.50322 1.26000 0.96554 1.02287 0.96346 0.84959 0.77928 0.77069 0.78572 1.19856 1.19424 1.19849 1.19630 0.92620 0.84082 1.49880 0.90546 1.41906 1.09320 1.04616 1.65067 1.20883 0.88229 0.86196 0.82229 1.90517 1.16037 1.87941 1.56547 1.21652 0.93915 0.87858 1.03430 1.59989 1.18721 1.00197 1.51952 1.22019 0.96453 0.87944 0.96629 0.89366 1.22211 0.86639 0.99881 0.90408 1.86575 1.32193 1.92457 1.27704 1.21235 0.98429 0.96877 0.82430 1.45958 1.50554 1.22914 1.18066 1.17655 0.78792 0.84481 0.86828 1.90845 1.56823 1.24180 1.72713 1.22475 1.02743 1.03550 0.95383 1.21206 0.90642 0.88721 1.00276 1.20245 1.05190 0.98936 0.82801 1.22551 1.02594 0.93334 1.02009 1.22000 1.06686 1.02654 0.93719 1.24774 1.00412 0.83699 1.01828 1.84272 1.56578 1.35889 1.29049 0.91303 0.76884 0.90587 0.87795 0.83686 0.90670 0.92957 0.76204 0.90431 0.92615 0.75802 0.81376 0.78649 0.80931 0.81278 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -28.70 5.29 -306.98 -1.62 -30.32 16 10 C 0.44 20.39 7.82 87.66 0.69 21.07 16 11 O -0.62 -34.74 15.78 -3.08 -0.05 -34.79 16 12 C 0.06 2.04 5.96 85.56 0.51 2.55 16 13 N -0.67 -20.95 5.87 -495.56 -2.91 -23.86 16 14 C 0.08 1.79 2.60 44.91 0.12 1.91 16 15 H 0.09 1.53 7.80 -2.39 -0.02 1.51 16 16 C 0.09 1.78 6.80 71.98 0.49 2.27 16 17 O -0.58 -14.57 12.64 -148.98 -1.88 -16.45 16 18 C 0.13 3.35 5.20 86.38 0.45 3.79 16 19 N -0.72 -17.15 4.98 -472.19 -2.35 -19.50 16 20 C 0.53 14.24 7.36 85.06 0.63 14.87 16 21 O -0.56 -19.00 12.41 19.16 0.24 -18.76 16 22 C -0.22 -4.35 9.85 22.48 0.22 -4.13 16 23 C 0.01 0.20 9.95 22.50 0.22 0.42 16 24 C -0.02 -0.53 5.32 23.03 0.12 -0.41 16 25 C -0.19 -3.76 10.90 22.71 0.25 -3.51 16 26 C -0.23 -4.62 10.87 22.07 0.24 -4.38 16 27 C -0.04 -0.87 12.06 67.11 0.81 -0.06 16 28 O -0.16 -4.80 7.81 17.61 0.14 -4.66 16 29 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 31 H 0.08 1.97 8.06 -2.39 -0.02 1.95 16 32 H 0.10 3.01 7.36 -2.39 -0.02 2.99 16 33 H 0.34 11.34 6.41 -89.70 -0.58 10.76 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.05 7.35 -2.39 -0.02 1.04 16 36 H 0.39 6.12 9.12 -74.06 -0.68 5.45 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.79 7.39 -2.39 -0.02 1.77 16 39 H 0.41 8.20 7.33 -92.71 -0.68 7.52 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.22 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -82.80 379.34 -1.69 -84.49 By element: Atomic # 1 Polarization: 52.84 SS G_CDS: -1.58 Total: 51.26 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.02 Total: 16.33 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.60 Total: -122.10 kcal Atomic # 8 Polarization: -73.10 SS G_CDS: -1.56 Total: -74.66 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -82.80 -1.69 -84.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331663019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.330 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds