Wall clock time and date at job start Tue Mar 31 2020 21:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35974 * 116.99890 * 2 1 4 4 C 1.38550 * 120.08251 * 359.72415 * 3 2 1 5 5 C 1.38241 * 120.01547 * 179.71868 * 4 3 2 6 6 C 1.38282 * 120.17814 * 0.55920 * 5 4 3 7 7 N 1.48026 * 119.91759 * 179.69901 * 6 5 4 8 8 O 1.21799 * 119.99724 * 180.02562 * 7 6 5 9 9 O 1.21797 * 120.00092 * 0.02562 * 7 6 5 10 10 C 1.38194 * 120.16552 * 359.71877 * 6 5 4 11 11 C 1.38726 * 119.97938 * 0.02562 * 10 6 5 12 12 N 1.40127 * 120.08611 * 179.97438 * 11 10 6 13 13 C 1.34775 * 120.00217 * 20.04360 * 12 11 10 14 14 O 1.21296 * 119.99832 * 5.72871 * 13 12 11 15 15 C 1.50696 * 120.00250 * 185.73311 * 13 12 11 16 16 H 1.08998 * 109.47385 * 48.39988 * 15 13 12 17 17 C 1.53003 * 109.46877 * 288.39964 * 15 13 12 18 18 N 1.46905 * 109.47500 * 168.40139 * 15 13 12 19 19 C 1.46900 * 111.00101 * 195.35623 * 18 15 13 20 20 C 1.46897 * 110.99895 * 71.39779 * 18 15 13 21 21 C 1.50707 * 109.47026 * 190.00238 * 20 18 15 22 22 H 1.07998 * 119.99709 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99957 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00094 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46670 * 90.00355 * 25 23 21 27 27 H 1.48490 * 109.47354 * 210.00068 * 25 23 21 28 28 H 1.48499 * 109.47178 * 330.00539 * 25 23 21 29 29 H 1.09006 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47422 * 300.00026 * 1 2 3 31 31 H 1.09002 * 109.47117 * 60.00294 * 1 2 3 32 32 H 1.08000 * 119.99186 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.91574 * 180.25136 * 5 4 3 34 34 H 1.07995 * 120.01081 * 180.02562 * 10 6 5 35 35 H 0.96994 * 120.00181 * 200.03796 * 12 11 10 36 36 H 1.09000 * 109.46943 * 299.99667 * 17 15 13 37 37 H 1.08999 * 109.47247 * 59.99862 * 17 15 13 38 38 H 1.08997 * 109.47122 * 180.02562 * 17 15 13 39 39 H 1.09001 * 109.46896 * 62.45496 * 19 18 15 40 40 H 1.08996 * 109.46555 * 182.45222 * 19 18 15 41 41 H 1.09001 * 109.46848 * 302.45324 * 19 18 15 42 42 H 1.09001 * 109.47413 * 310.00220 * 20 18 15 43 43 H 1.09003 * 109.47346 * 70.00738 * 20 18 15 44 44 H 0.97000 * 120.00253 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2933 2.3746 -0.0058 5 6 1.9223 3.6056 0.0001 6 6 3.3031 3.6807 0.0001 7 7 3.9706 5.0019 -0.0003 8 8 5.1867 5.0698 -0.0008 9 8 3.3037 6.0211 -0.0002 10 6 4.0614 2.5254 0.0001 11 6 3.4372 1.2865 -0.0005 12 7 4.2039 0.1136 -0.0011 13 6 5.4904 0.1493 0.3989 14 8 5.9549 1.1719 0.8570 15 6 6.3518 -1.0811 0.2770 16 1 6.2458 -1.5013 -0.7232 17 6 5.9121 -2.1164 1.3142 18 7 7.7567 -0.7205 0.5102 19 6 8.6571 -1.7867 0.0512 20 6 7.9915 -0.4063 1.9258 21 6 9.3657 0.1911 2.0866 22 1 10.0009 0.3243 1.2233 23 6 9.8120 0.5674 3.3356 24 7 9.0387 0.4047 4.3868 25 14 11.5157 1.3072 3.5350 26 1 11.4341 2.7831 3.3926 27 1 12.0484 0.9683 4.8790 28 1 12.4188 0.7585 2.4917 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2147 2.3194 -0.0107 33 1 1.3338 4.5112 -0.0003 34 1 5.1396 2.5870 0.0005 35 1 3.8087 -0.7240 -0.2893 36 1 6.0182 -1.6962 2.3144 37 1 4.8697 -2.3840 1.1412 38 1 6.5354 -3.0062 1.2264 39 1 8.5424 -1.9210 -1.0244 40 1 9.6881 -1.5129 0.2752 41 1 8.4088 -2.7169 0.5621 42 1 7.2426 0.3077 2.2686 43 1 7.9208 -1.3192 2.5173 44 1 9.3528 0.6691 5.2657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:45 Heat of formation + Delta-G solvation = -20.256188 kcal Electronic energy + Delta-G solvation = -29797.748505 eV Core-core repulsion = 25527.271823 eV Total energy + Delta-G solvation = -4270.476681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.07533 -41.12137 -39.79585 -37.92772 -36.66487 -36.35180 -34.90163 -32.64005 -31.34496 -31.08696 -29.55821 -28.16955 -27.21816 -25.96983 -25.38297 -24.25767 -23.02328 -22.27971 -21.12634 -19.67759 -19.21976 -18.62075 -18.47737 -17.35583 -17.16664 -16.91249 -16.42898 -16.30500 -16.02484 -15.11754 -14.72541 -14.65446 -14.33310 -14.24204 -13.85382 -13.74433 -13.65400 -13.30266 -12.85281 -12.73328 -12.18480 -11.99978 -11.92963 -11.81539 -11.79473 -11.46729 -11.36398 -11.06817 -10.98209 -10.94394 -10.87121 -10.82238 -10.51560 -10.38335 -9.85496 -9.48242 -9.31773 -8.95046 -8.32213 -8.24542 -7.29276 -5.92315 -3.91498 -0.11720 0.70145 1.34435 1.51036 2.51097 2.68077 2.83249 3.21650 3.41064 3.47334 3.49408 4.10787 4.26784 4.48688 4.53172 4.54552 4.61156 4.63286 4.87635 4.90673 4.96303 5.21118 5.25117 5.31517 5.34738 5.45092 5.49254 5.61183 5.78334 5.88317 5.88403 6.04601 6.23620 6.29393 6.42460 6.46846 6.68713 6.71902 7.20725 7.33921 7.37984 7.80932 7.85515 8.15067 8.20328 8.30260 8.60031 9.13928 9.70997 11.19123 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.003711 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.573262 B = 7543.615419 C = 9426.906449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.138 3.862 4 C -0.188 4.188 5 C -0.043 4.043 6 C -0.055 4.055 7 N 0.033 4.967 8 O -0.145 6.145 9 O -0.175 6.175 10 C -0.049 4.049 11 C 0.143 3.857 12 N -0.668 5.668 13 C 0.514 3.486 14 O -0.467 6.467 15 C 0.071 3.929 16 H 0.095 0.905 17 C -0.182 4.182 18 N -0.521 5.521 19 C 0.036 3.964 20 C 0.187 3.813 21 C -0.501 4.501 22 H 0.062 0.938 23 C 0.056 3.944 24 N -0.900 5.900 25 Si 0.896 3.104 26 H -0.279 1.279 27 H -0.289 1.289 28 H -0.274 1.274 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.194 0.806 35 H 0.416 0.584 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.051 0.949 43 H -0.009 1.009 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.507 -4.361 -11.525 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.089 3.911 4 C -0.208 4.208 5 C -0.064 4.064 6 C -0.139 4.139 7 N 0.552 4.448 8 O -0.364 6.364 9 O -0.387 6.387 10 C -0.070 4.070 11 C 0.046 3.954 12 N -0.315 5.315 13 C 0.301 3.699 14 O -0.336 6.336 15 C -0.043 4.043 16 H 0.113 0.887 17 C -0.241 4.241 18 N -0.245 5.245 19 C -0.112 4.112 20 C 0.062 3.938 21 C -0.540 4.540 22 H 0.080 0.920 23 C -0.145 4.145 24 N -0.540 5.540 25 Si 0.724 3.276 26 H -0.205 1.205 27 H -0.215 1.215 28 H -0.199 1.199 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.211 0.789 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.009 0.991 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.208 -4.050 -11.259 24.350 hybrid contribution 0.277 -0.273 0.634 0.744 sum -20.930 -4.323 -10.625 23.867 Atomic orbital electron populations 1.23211 0.77114 1.04799 1.01911 1.86065 1.22428 1.25648 1.87867 1.18951 0.90395 0.85525 0.96196 1.20946 1.00735 0.90189 1.08920 1.20714 0.91494 0.99414 0.94745 1.20792 0.92754 0.83297 1.17082 1.43469 1.01255 1.02583 0.97490 1.94639 0.95358 1.93795 1.52611 1.94482 1.65273 1.24628 1.54296 1.21470 1.04666 0.87651 0.93252 1.16784 0.86738 0.87449 1.04472 1.43625 1.12098 1.09278 1.66470 1.21227 0.80495 0.91677 0.76505 1.90720 1.71380 1.32229 1.39269 1.21508 0.92092 0.90557 1.00096 0.88714 1.22410 1.00718 0.99526 1.01431 1.62145 0.98448 1.38357 1.25570 1.22278 0.99180 0.91995 0.97760 1.19958 0.98528 0.95432 0.79856 1.21109 0.99671 1.40185 0.93037 0.92027 1.24937 0.97645 0.96045 0.95881 1.69954 1.36594 1.48537 0.98895 0.86528 0.84219 0.79798 0.77042 1.20518 1.21479 1.19944 0.87495 0.91968 0.92048 0.82973 0.82822 0.78904 0.74690 0.90511 0.92743 0.91228 0.93553 0.89971 0.96635 0.93106 0.99111 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.46 9.86 -19.66 -0.19 -2.65 16 3 C 0.14 1.39 6.70 -39.07 -0.26 1.12 16 4 C -0.19 -1.56 9.04 -39.47 -0.36 -1.92 16 5 C -0.04 -0.45 9.55 -39.56 -0.38 -0.83 16 6 C -0.06 -0.80 6.85 -79.94 -0.55 -1.35 16 7 N 0.03 0.56 4.45 33.96 0.15 0.71 16 8 O -0.14 -2.80 18.44 -29.46 -0.54 -3.34 16 9 O -0.17 -2.84 18.44 -29.46 -0.54 -3.38 16 10 C -0.05 -0.76 8.29 -39.42 -0.33 -1.09 16 11 C 0.14 1.89 6.51 -83.49 -0.54 1.34 16 12 N -0.67 -8.58 5.32 -9.75 -0.05 -8.63 16 13 C 0.51 8.81 6.75 -10.99 -0.07 8.74 16 14 O -0.47 -10.33 11.29 5.54 0.06 -10.27 16 15 C 0.07 1.15 2.70 -68.86 -0.19 0.96 16 16 H 0.09 1.21 8.00 -51.93 -0.42 0.80 16 17 C -0.18 -2.68 8.34 37.16 0.31 -2.37 16 18 N -0.52 -11.00 4.44 -237.72 -1.05 -12.05 16 19 C 0.04 0.66 9.26 60.06 0.56 1.22 16 20 C 0.19 4.89 3.25 -4.97 -0.02 4.87 16 21 C -0.50 -14.51 8.42 -34.44 -0.29 -14.80 16 22 H 0.06 1.77 7.14 -52.49 -0.37 1.39 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 25 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.20 7.68 -51.93 -0.40 -0.20 16 31 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 32 H 0.15 0.70 6.30 -52.49 -0.33 0.37 16 33 H 0.15 1.30 7.60 -52.49 -0.40 0.90 16 34 H 0.19 3.65 5.00 -52.49 -0.26 3.39 16 35 H 0.42 3.95 8.26 -40.82 -0.34 3.62 16 36 H 0.08 1.41 6.53 -51.93 -0.34 1.07 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.98 6.87 -51.93 -0.36 0.63 16 39 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.08 1.66 6.71 -51.93 -0.35 1.31 16 41 H 0.02 0.26 6.79 -51.93 -0.35 -0.09 16 42 H 0.05 1.49 5.92 -51.93 -0.31 1.18 16 43 H -0.01 -0.24 6.84 -51.93 -0.36 -0.59 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -36.10 367.32 -7.52 -43.62 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.38 Total: 1.29 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.22 Total: -1.49 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.22 Total: -46.86 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -1.22 Total: -19.64 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.10 -7.52 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.366 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds