Wall clock time and date at job start Tue Mar 31 2020 21:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35974 * 116.99890 * 2 1 4 4 C 1.38550 * 120.08251 * 359.72415 * 3 2 1 5 5 C 1.38241 * 120.01547 * 179.71868 * 4 3 2 6 6 C 1.38282 * 120.17814 * 0.55920 * 5 4 3 7 7 N 1.48026 * 119.91759 * 179.69901 * 6 5 4 8 8 O 1.21799 * 119.99724 * 180.02562 * 7 6 5 9 9 O 1.21797 * 120.00092 * 0.02562 * 7 6 5 10 10 C 1.38194 * 120.16552 * 359.71877 * 6 5 4 11 11 C 1.38726 * 119.97938 * 0.02562 * 10 6 5 12 12 N 1.40127 * 120.08611 * 179.97438 * 11 10 6 13 13 C 1.34775 * 120.00217 * 20.04360 * 12 11 10 14 14 O 1.21296 * 119.99832 * 5.72871 * 13 12 11 15 15 C 1.50696 * 120.00250 * 185.73311 * 13 12 11 16 16 H 1.08998 * 109.47385 * 48.39988 * 15 13 12 17 17 C 1.53003 * 109.46877 * 288.39964 * 15 13 12 18 18 N 1.46905 * 109.47500 * 168.40139 * 15 13 12 19 19 C 1.46900 * 111.00101 * 195.35623 * 18 15 13 20 20 C 1.46897 * 110.99895 * 71.39779 * 18 15 13 21 21 C 1.50707 * 109.47026 * 190.00238 * 20 18 15 22 22 H 1.07998 * 119.99709 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99957 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00094 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46670 * 90.00355 * 25 23 21 27 27 H 1.48490 * 109.47354 * 210.00068 * 25 23 21 28 28 H 1.48499 * 109.47178 * 330.00539 * 25 23 21 29 29 H 1.09006 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47422 * 300.00026 * 1 2 3 31 31 H 1.09002 * 109.47117 * 60.00294 * 1 2 3 32 32 H 1.08000 * 119.99186 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.91574 * 180.25136 * 5 4 3 34 34 H 1.07995 * 120.01081 * 180.02562 * 10 6 5 35 35 H 0.96994 * 120.00181 * 200.03796 * 12 11 10 36 36 H 1.09000 * 109.46943 * 299.99667 * 17 15 13 37 37 H 1.08999 * 109.47247 * 59.99862 * 17 15 13 38 38 H 1.08997 * 109.47122 * 180.02562 * 17 15 13 39 39 H 1.09001 * 109.46896 * 62.45496 * 19 18 15 40 40 H 1.08996 * 109.46555 * 182.45222 * 19 18 15 41 41 H 1.09001 * 109.46848 * 302.45324 * 19 18 15 42 42 H 1.09001 * 109.47413 * 310.00220 * 20 18 15 43 43 H 1.09003 * 109.47346 * 70.00738 * 20 18 15 44 44 H 0.97000 * 120.00253 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2933 2.3746 -0.0058 5 6 1.9223 3.6056 0.0001 6 6 3.3031 3.6807 0.0001 7 7 3.9706 5.0019 -0.0003 8 8 5.1867 5.0698 -0.0008 9 8 3.3037 6.0211 -0.0002 10 6 4.0614 2.5254 0.0001 11 6 3.4372 1.2865 -0.0005 12 7 4.2039 0.1136 -0.0011 13 6 5.4904 0.1493 0.3989 14 8 5.9549 1.1719 0.8570 15 6 6.3518 -1.0811 0.2770 16 1 6.2458 -1.5013 -0.7232 17 6 5.9121 -2.1164 1.3142 18 7 7.7567 -0.7205 0.5102 19 6 8.6571 -1.7867 0.0512 20 6 7.9915 -0.4063 1.9258 21 6 9.3657 0.1911 2.0866 22 1 10.0009 0.3243 1.2233 23 6 9.8120 0.5674 3.3356 24 7 9.0387 0.4047 4.3868 25 14 11.5157 1.3072 3.5350 26 1 11.4341 2.7831 3.3926 27 1 12.0484 0.9683 4.8790 28 1 12.4188 0.7585 2.4917 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2147 2.3194 -0.0107 33 1 1.3338 4.5112 -0.0003 34 1 5.1396 2.5870 0.0005 35 1 3.8087 -0.7240 -0.2893 36 1 6.0182 -1.6962 2.3144 37 1 4.8697 -2.3840 1.1412 38 1 6.5354 -3.0062 1.2264 39 1 8.5424 -1.9210 -1.0244 40 1 9.6881 -1.5129 0.2752 41 1 8.4088 -2.7169 0.5621 42 1 7.2426 0.3077 2.2686 43 1 7.9208 -1.3192 2.5173 44 1 9.3528 0.6691 5.2657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:43 Heat of formation + Delta-G solvation = -47.913263 kcal Electronic energy + Delta-G solvation = -29798.947805 eV Core-core repulsion = 25527.271823 eV Total energy + Delta-G solvation = -4271.675982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.29541 -42.18441 -40.88758 -38.88340 -38.08065 -37.66582 -36.12667 -34.78869 -32.43452 -32.26207 -30.71664 -29.20883 -28.75382 -26.97748 -26.80291 -25.80644 -24.35606 -23.35527 -22.57074 -20.94932 -20.48274 -19.76433 -19.34825 -18.65362 -18.62817 -18.28258 -17.88205 -17.11033 -16.93887 -16.58873 -16.22932 -16.04485 -15.53628 -15.53275 -15.27904 -14.86013 -14.49711 -14.47956 -14.20732 -14.03370 -13.70060 -13.41661 -13.16567 -13.00265 -12.76167 -12.74192 -12.70976 -12.44507 -12.37307 -12.33054 -12.32075 -12.28588 -12.25912 -11.95204 -11.80101 -11.33295 -10.71683 -10.49230 -10.18950 -9.26215 -8.96211 -8.18798 -6.25891 -1.25334 -0.22865 0.23045 0.39024 1.35913 1.40860 1.45970 1.49356 1.67659 1.91905 2.22827 2.40147 3.14719 3.24831 3.33920 3.51684 3.53574 3.61305 3.86393 4.04365 4.07999 4.21643 4.36542 4.40069 4.45222 4.54755 4.58549 4.63839 4.69213 4.74822 4.84998 4.85881 4.90290 5.07922 5.14202 5.18810 5.30253 5.32282 5.45166 5.64007 5.99560 6.08458 6.24694 6.37689 6.48253 6.63592 6.89039 7.08702 7.41633 8.92583 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.003711 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.573262 B = 7543.615419 C = 9426.906449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.310 6.310 3 C 0.167 3.833 4 C -0.169 4.169 5 C -0.023 4.023 6 C -0.082 4.082 7 N 0.037 4.963 8 O -0.246 6.246 9 O -0.130 6.130 10 C -0.074 4.074 11 C 0.119 3.881 12 N -0.647 5.647 13 C 0.510 3.490 14 O -0.529 6.529 15 C 0.068 3.932 16 H 0.142 0.858 17 C -0.171 4.171 18 N -0.543 5.543 19 C 0.038 3.962 20 C 0.212 3.788 21 C -0.520 4.520 22 H 0.058 0.942 23 C -0.001 4.001 24 N -0.936 5.936 25 Si 0.963 3.037 26 H -0.282 1.282 27 H -0.278 1.278 28 H -0.259 1.259 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.206 0.794 33 H 0.184 0.816 34 H 0.149 0.851 35 H 0.434 0.566 36 H 0.030 0.970 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.028 0.972 42 H 0.011 0.989 43 H -0.029 1.029 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.569 -6.095 -13.160 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.117 3.883 4 C -0.188 4.188 5 C -0.043 4.043 6 C -0.167 4.167 7 N 0.549 4.451 8 O -0.441 6.441 9 O -0.358 6.358 10 C -0.096 4.096 11 C 0.021 3.979 12 N -0.295 5.295 13 C 0.298 3.702 14 O -0.403 6.403 15 C -0.044 4.044 16 H 0.160 0.840 17 C -0.230 4.230 18 N -0.267 5.267 19 C -0.109 4.109 20 C 0.086 3.914 21 C -0.558 4.558 22 H 0.076 0.924 23 C -0.198 4.198 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.209 1.209 27 H -0.203 1.203 28 H -0.183 1.183 29 H 0.145 0.855 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.223 0.777 33 H 0.201 0.799 34 H 0.166 0.834 35 H 0.275 0.725 36 H 0.049 0.951 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.029 0.971 43 H -0.011 1.011 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.128 -5.904 -12.940 28.874 hybrid contribution 1.091 0.192 1.064 1.537 sum -24.037 -5.712 -11.876 27.412 Atomic orbital electron populations 1.23692 0.74240 1.06931 1.03686 1.86098 1.25190 1.24264 1.86680 1.18943 0.89017 0.87219 0.93112 1.21500 1.02924 0.88160 1.06201 1.21182 0.89312 1.01730 0.92069 1.20961 0.94165 0.81176 1.20382 1.43856 1.00959 1.03652 0.96613 1.94664 0.96817 1.94412 1.58216 1.94391 1.64700 1.25798 1.50953 1.21116 1.03024 0.89719 0.95758 1.16849 0.88371 0.86324 1.06311 1.43249 1.10745 1.10179 1.65354 1.21480 0.81811 0.91072 0.75819 1.90739 1.72965 1.34351 1.42270 1.21730 0.89125 0.90674 1.02885 0.84033 1.22308 1.03749 0.98755 0.98163 1.61887 1.02002 1.40770 1.22053 1.22285 0.97065 0.91388 1.00182 1.19398 0.95969 0.93220 0.82844 1.21534 1.01052 1.40159 0.93077 0.92427 1.25859 1.01859 0.96487 0.95606 1.70088 1.38582 1.49687 0.99355 0.85475 0.79530 0.78432 0.77750 1.20856 1.20307 1.18349 0.85503 0.90557 0.89730 0.77673 0.79852 0.83415 0.72517 0.95064 0.88298 0.90241 0.89559 0.92728 0.95353 0.97051 1.01118 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.13 16 2 O -0.31 -3.45 9.86 -93.26 -0.92 -4.37 16 3 C 0.17 2.76 6.70 22.60 0.15 2.91 16 4 C -0.17 -1.95 9.04 22.34 0.20 -1.75 16 5 C -0.02 -0.41 9.55 22.28 0.21 -0.20 16 6 C -0.08 -2.44 6.85 36.37 0.25 -2.19 16 7 N 0.04 1.32 4.45 -46.46 -0.21 1.11 16 8 O -0.25 -10.81 18.44 18.89 0.35 -10.46 16 9 O -0.13 -4.20 18.44 18.89 0.35 -3.85 16 10 C -0.07 -2.50 8.29 22.38 0.19 -2.31 16 11 C 0.12 3.09 6.51 38.19 0.25 3.33 16 12 N -0.65 -16.36 5.32 -303.13 -1.61 -17.98 16 13 C 0.51 18.31 6.75 87.66 0.59 18.90 16 14 O -0.53 -25.90 11.29 -3.08 -0.03 -25.93 16 15 C 0.07 2.20 2.70 44.17 0.12 2.32 16 16 H 0.14 3.22 8.00 -2.39 -0.02 3.20 16 17 C -0.17 -4.93 8.34 71.98 0.60 -4.33 16 18 N -0.54 -23.71 4.44 -906.02 -4.02 -27.73 16 19 C 0.04 1.39 9.26 127.69 1.18 2.57 16 20 C 0.21 11.83 3.25 85.56 0.28 12.10 16 21 C -0.52 -31.73 8.42 25.60 0.22 -31.52 16 22 H 0.06 3.46 7.14 -2.91 -0.02 3.44 16 23 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 24 N -0.94 -60.31 13.29 21.45 0.28 -60.02 16 25 Si 0.96 48.02 29.54 68.60 2.03 50.05 16 26 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 28 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 29 H 0.13 -0.20 8.14 -2.38 -0.02 -0.22 16 30 H 0.08 -0.01 7.68 -2.39 -0.02 -0.03 16 31 H 0.08 -0.17 7.65 -2.39 -0.02 -0.19 16 32 H 0.21 0.26 6.30 -2.91 -0.02 0.24 16 33 H 0.18 2.20 7.60 -2.91 -0.02 2.18 16 34 H 0.15 6.47 5.00 -2.91 -0.01 6.46 16 35 H 0.43 7.19 8.26 -92.71 -0.77 6.42 16 36 H 0.03 1.18 6.53 -2.39 -0.02 1.17 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.12 6.87 -2.39 -0.02 2.11 16 39 H 0.09 2.41 8.13 -2.39 -0.02 2.40 16 40 H 0.05 2.25 6.71 -2.39 -0.02 2.24 16 41 H 0.03 0.94 6.79 -2.39 -0.02 0.92 16 42 H 0.01 0.73 5.92 -2.39 -0.01 0.72 16 43 H -0.03 -1.67 6.84 -2.39 -0.02 -1.69 16 44 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -91.24 367.32 2.33 -88.92 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.30 Total: 8.88 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.81 Total: 1.39 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -5.55 Total: -104.62 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.26 Total: -44.61 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -91.24 2.33 -88.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.003 kcal (2) G-P(sol) polarization free energy of solvation -91.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds