Wall clock time and date at job start Tue Mar 31 2020 21:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35975 * 116.99801 * 2 1 4 4 C 1.38551 * 120.08444 * 359.72938 * 3 2 1 5 5 C 1.38249 * 120.01138 * 179.76807 * 4 3 2 6 6 C 1.38275 * 120.18146 * 0.50817 * 5 4 3 7 7 N 1.48018 * 119.91757 * 179.72699 * 6 5 4 8 8 O 1.21799 * 120.00177 * 180.02562 * 7 6 5 9 9 O 1.21801 * 119.99964 * 0.02562 * 7 6 5 10 10 C 1.38194 * 120.16270 * 359.74029 * 6 5 4 11 11 C 1.38726 * 119.98777 * 0.02562 * 10 6 5 12 12 N 1.40121 * 120.08834 * 180.02562 * 11 10 6 13 13 C 1.34773 * 119.99962 * 325.36669 * 12 11 10 14 14 O 1.21298 * 120.00224 * 4.46445 * 13 12 11 15 15 C 1.50704 * 119.99965 * 184.46147 * 13 12 11 16 16 H 1.09000 * 109.46912 * 300.00330 * 15 13 12 17 17 C 1.52998 * 109.47371 * 60.00060 * 15 13 12 18 18 N 1.46895 * 109.47168 * 180.02562 * 15 13 12 19 19 C 1.46907 * 110.99795 * 298.94786 * 18 15 13 20 20 C 1.46905 * 111.00034 * 174.99942 * 18 15 13 21 21 C 1.50705 * 109.46997 * 189.99554 * 20 18 15 22 22 H 1.07996 * 120.00242 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99531 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99866 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00375 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.46782 * 90.00138 * 25 23 21 27 27 H 1.48497 * 109.47403 * 209.99965 * 25 23 21 28 28 H 1.48497 * 109.47242 * 330.00589 * 25 23 21 29 29 H 1.08999 * 109.47477 * 299.99852 * 1 2 3 30 30 H 1.08999 * 109.47593 * 59.99407 * 1 2 3 31 31 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.98930 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.90586 * 180.25158 * 5 4 3 34 34 H 1.07999 * 120.00281 * 180.02562 * 10 6 5 35 35 H 0.97001 * 119.99627 * 145.37731 * 12 11 10 36 36 H 1.09005 * 109.47287 * 300.00603 * 17 15 13 37 37 H 1.09000 * 109.46882 * 60.00252 * 17 15 13 38 38 H 1.08998 * 109.47228 * 180.02562 * 17 15 13 39 39 H 1.08997 * 109.46699 * 60.00113 * 19 18 15 40 40 H 1.08995 * 109.47123 * 180.02562 * 19 18 15 41 41 H 1.08997 * 109.46972 * 300.00632 * 19 18 15 42 42 H 1.08999 * 109.47161 * 309.99767 * 20 18 15 43 43 H 1.09003 * 109.47038 * 69.99459 * 20 18 15 44 44 H 0.97005 * 120.00633 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0057 5 6 1.9224 3.6057 -0.0008 6 6 3.3031 3.6807 -0.0009 7 7 3.9707 5.0018 -0.0018 8 8 5.1867 5.0697 -0.0024 9 8 3.3038 6.0211 -0.0020 10 6 4.0613 2.5253 -0.0004 11 6 3.4372 1.2864 -0.0004 12 7 4.2039 0.1136 0.0006 13 6 5.3770 0.0748 -0.6619 14 8 5.8083 1.0776 -1.1908 15 6 6.1528 -1.2145 -0.7454 16 1 6.4066 -1.5515 0.2596 17 6 5.3007 -2.2784 -1.4402 18 7 7.3855 -0.9952 -1.5138 19 6 7.0815 -0.5628 -2.8845 20 6 8.2258 -2.2002 -1.5161 21 6 9.5770 -1.8692 -2.0957 22 1 9.7903 -0.8643 -2.4285 23 6 10.5411 -2.8493 -2.1999 24 7 11.7204 -2.5604 -2.7052 25 14 10.1728 -4.5871 -1.6222 26 1 9.6060 -5.3732 -2.7475 27 1 11.4268 -5.2288 -1.1523 28 1 9.1926 -4.5410 -0.5076 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2147 2.3195 -0.0097 33 1 1.3338 4.5112 -0.0011 34 1 5.1396 2.5870 -0.0001 35 1 3.8903 -0.6704 0.4780 36 1 4.3862 -2.4410 -0.8697 37 1 5.0469 -1.9414 -2.4452 38 1 5.8617 -3.2110 -1.5002 39 1 6.5177 0.3696 -2.8546 40 1 8.0116 -0.4081 -3.4313 41 1 6.4896 -1.3294 -3.3844 42 1 8.3469 -2.5607 -0.4946 43 1 7.7507 -2.9733 -2.1202 44 1 12.3989 -3.2498 -2.7782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:49 Heat of formation + Delta-G solvation = -18.931983 kcal Electronic energy + Delta-G solvation = -29456.034468 eV Core-core repulsion = 25185.615208 eV Total energy + Delta-G solvation = -4270.419260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27675 -41.30228 -40.00966 -38.13137 -36.82037 -36.56019 -35.13972 -32.72713 -31.55495 -31.28886 -29.73637 -28.31865 -27.71950 -26.16042 -25.62208 -24.43761 -23.10946 -22.39308 -20.91489 -19.84380 -19.39761 -18.78618 -18.70429 -17.56552 -17.42178 -16.98911 -16.83168 -16.58300 -16.19376 -15.48678 -15.01453 -14.73931 -14.59693 -14.12311 -14.03784 -13.96685 -13.79153 -13.49346 -13.24752 -12.88056 -12.55860 -12.14455 -12.07864 -11.95773 -11.86250 -11.59939 -11.34924 -11.31003 -11.25830 -11.15131 -11.07977 -10.81201 -10.71413 -10.43588 -9.89015 -9.63604 -9.40980 -9.25315 -8.59938 -8.57522 -7.43958 -6.05821 -4.03621 -0.31911 0.47742 1.14108 1.29808 2.36269 2.44168 2.64160 2.97166 3.24560 3.31737 3.33150 3.93832 4.08512 4.30097 4.35439 4.38916 4.47793 4.50618 4.65679 4.70473 4.85246 5.02618 5.04247 5.15529 5.22814 5.26424 5.30788 5.39043 5.62092 5.66222 5.78944 6.04851 6.07577 6.23530 6.26965 6.32892 6.53500 6.74174 6.82426 6.99445 7.06282 7.52905 7.59968 7.81720 7.89551 8.08334 8.62714 9.05058 9.54406 11.07370 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002915 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.519186 B = 9602.369112 C =11221.610503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.304 6.304 3 C 0.151 3.849 4 C -0.193 4.193 5 C -0.033 4.033 6 C -0.062 4.062 7 N 0.034 4.966 8 O -0.149 6.149 9 O -0.171 6.171 10 C -0.029 4.029 11 C 0.132 3.868 12 N -0.669 5.669 13 C 0.521 3.479 14 O -0.490 6.490 15 C 0.066 3.934 16 H 0.108 0.892 17 C -0.185 4.185 18 N -0.506 5.506 19 C 0.021 3.979 20 C 0.163 3.837 21 C -0.509 4.509 22 H 0.083 0.917 23 C 0.069 3.931 24 N -0.898 5.898 25 Si 0.875 3.125 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.010 0.990 42 H 0.028 0.972 43 H -0.011 1.011 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.829 4.169 8.045 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.102 3.898 4 C -0.212 4.212 5 C -0.053 4.053 6 C -0.146 4.146 7 N 0.553 4.447 8 O -0.368 6.368 9 O -0.384 6.384 10 C -0.050 4.050 11 C 0.035 3.965 12 N -0.317 5.317 13 C 0.309 3.691 14 O -0.361 6.361 15 C -0.047 4.047 16 H 0.126 0.874 17 C -0.244 4.244 18 N -0.229 5.229 19 C -0.127 4.127 20 C 0.037 3.963 21 C -0.548 4.548 22 H 0.101 0.899 23 C -0.133 4.133 24 N -0.537 5.537 25 Si 0.702 3.298 26 H -0.204 1.204 27 H -0.211 1.211 28 H -0.192 1.192 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.197 0.803 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.029 0.971 42 H 0.046 0.954 43 H 0.006 0.994 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.233 4.295 7.803 29.605 hybrid contribution -0.819 -1.641 0.100 1.837 sum -29.052 2.653 7.903 30.225 Atomic orbital electron populations 1.23250 0.76979 1.05002 1.01977 1.86115 1.22520 1.25506 1.87428 1.19121 0.90629 0.85565 0.94495 1.21011 1.00937 0.90183 1.09117 1.20763 0.91466 0.99521 0.93555 1.20771 0.92856 0.83196 1.17767 1.43457 1.01215 1.02599 0.97479 1.94617 0.95460 1.93792 1.52887 1.94503 1.65238 1.24535 1.54096 1.21067 1.03558 0.87874 0.92509 1.16682 0.86696 0.87305 1.05791 1.43554 1.21627 1.13078 1.53440 1.21241 0.79483 0.91806 0.76570 1.90674 1.66366 1.35630 1.43463 1.21670 0.91769 0.89868 1.01406 0.87447 1.22455 0.99955 1.00227 1.01789 1.62006 1.11275 1.35479 1.14179 1.22571 1.02109 0.99109 0.88913 1.20254 0.93229 0.86215 0.96565 1.21015 0.94685 0.98666 1.40385 0.89903 1.24893 0.94933 0.98487 0.94987 1.69890 1.04507 1.33806 1.45509 0.86878 0.78023 0.85422 0.79470 1.20380 1.21110 1.19220 0.91917 0.91905 0.87351 0.82803 0.82625 0.80255 0.74521 0.92318 0.91631 0.90598 0.90826 0.90069 0.97132 0.95372 0.99383 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 101.05 0.99 1.05 16 2 O -0.30 -2.00 10.05 -19.66 -0.20 -2.20 16 3 C 0.15 1.23 6.70 -39.07 -0.26 0.97 16 4 C -0.19 -1.24 9.04 -39.46 -0.36 -1.59 16 5 C -0.03 -0.28 9.55 -39.56 -0.38 -0.65 16 6 C -0.06 -0.74 6.85 -79.95 -0.55 -1.28 16 7 N 0.03 0.48 4.45 33.96 0.15 0.64 16 8 O -0.15 -2.45 18.44 -29.46 -0.54 -3.00 16 9 O -0.17 -2.40 18.44 -29.46 -0.54 -2.94 16 10 C -0.03 -0.37 8.21 -39.42 -0.32 -0.69 16 11 C 0.13 1.43 6.32 -83.49 -0.53 0.90 16 12 N -0.67 -7.22 5.05 -9.74 -0.05 -7.27 16 13 C 0.52 7.64 6.72 -10.99 -0.07 7.57 16 14 O -0.49 -8.92 11.32 5.54 0.06 -8.86 16 15 C 0.07 1.01 2.76 -68.87 -0.19 0.82 16 16 H 0.11 1.50 8.03 -51.93 -0.42 1.08 16 17 C -0.19 -2.39 8.40 37.16 0.31 -2.08 16 18 N -0.51 -10.49 4.53 -237.72 -1.08 -11.57 16 19 C 0.02 0.42 8.57 60.07 0.51 0.94 16 20 C 0.16 3.81 3.23 -4.97 -0.02 3.79 16 21 C -0.51 -14.40 9.01 -34.44 -0.31 -14.72 16 22 H 0.08 2.60 7.37 -52.49 -0.39 2.21 16 23 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 24 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 25 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 29 H 0.06 0.09 7.67 -51.93 -0.40 -0.31 16 30 H 0.06 0.12 7.65 -51.93 -0.40 -0.28 16 31 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.15 0.45 6.30 -52.48 -0.33 0.12 16 33 H 0.16 1.00 7.60 -52.48 -0.40 0.60 16 34 H 0.18 2.74 5.74 -52.49 -0.30 2.44 16 35 H 0.42 3.32 8.12 -40.82 -0.33 2.99 16 36 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 37 H 0.06 0.90 6.39 -51.93 -0.33 0.56 16 38 H 0.08 1.06 6.75 -51.93 -0.35 0.71 16 39 H 0.07 1.46 5.44 -51.93 -0.28 1.18 16 40 H 0.08 1.84 6.76 -51.93 -0.35 1.49 16 41 H 0.01 0.19 6.28 -51.93 -0.33 -0.13 16 42 H 0.03 0.65 7.05 -51.93 -0.37 0.29 16 43 H -0.01 -0.26 6.37 -51.93 -0.33 -0.59 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -34.89 362.77 -7.18 -42.06 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.29 Total: 1.23 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.26 Total: -3.10 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.20 Total: -44.94 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.22 Total: -17.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.89 -7.18 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.133 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds