Wall clock time and date at job start Tue Mar 31 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35975 * 116.99801 * 2 1 4 4 C 1.38551 * 120.08444 * 359.72938 * 3 2 1 5 5 C 1.38249 * 120.01138 * 179.76807 * 4 3 2 6 6 C 1.38275 * 120.18146 * 0.50817 * 5 4 3 7 7 N 1.48018 * 119.91757 * 179.72699 * 6 5 4 8 8 O 1.21799 * 120.00177 * 180.02562 * 7 6 5 9 9 O 1.21801 * 119.99964 * 0.02562 * 7 6 5 10 10 C 1.38194 * 120.16270 * 359.74029 * 6 5 4 11 11 C 1.38726 * 119.98777 * 0.02562 * 10 6 5 12 12 N 1.40121 * 120.08834 * 180.02562 * 11 10 6 13 13 C 1.34773 * 119.99962 * 325.36669 * 12 11 10 14 14 O 1.21298 * 120.00224 * 4.46445 * 13 12 11 15 15 C 1.50704 * 119.99965 * 184.46147 * 13 12 11 16 16 H 1.09000 * 109.46912 * 300.00330 * 15 13 12 17 17 C 1.52998 * 109.47371 * 60.00060 * 15 13 12 18 18 N 1.46895 * 109.47168 * 180.02562 * 15 13 12 19 19 C 1.46907 * 110.99795 * 298.94786 * 18 15 13 20 20 C 1.46905 * 111.00034 * 174.99942 * 18 15 13 21 21 C 1.50705 * 109.46997 * 189.99554 * 20 18 15 22 22 H 1.07996 * 120.00242 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99531 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99866 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00375 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.46782 * 90.00138 * 25 23 21 27 27 H 1.48497 * 109.47403 * 209.99965 * 25 23 21 28 28 H 1.48497 * 109.47242 * 330.00589 * 25 23 21 29 29 H 1.08999 * 109.47477 * 299.99852 * 1 2 3 30 30 H 1.08999 * 109.47593 * 59.99407 * 1 2 3 31 31 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.98930 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.90586 * 180.25158 * 5 4 3 34 34 H 1.07999 * 120.00281 * 180.02562 * 10 6 5 35 35 H 0.97001 * 119.99627 * 145.37731 * 12 11 10 36 36 H 1.09005 * 109.47287 * 300.00603 * 17 15 13 37 37 H 1.09000 * 109.46882 * 60.00252 * 17 15 13 38 38 H 1.08998 * 109.47228 * 180.02562 * 17 15 13 39 39 H 1.08997 * 109.46699 * 60.00113 * 19 18 15 40 40 H 1.08995 * 109.47123 * 180.02562 * 19 18 15 41 41 H 1.08997 * 109.46972 * 300.00632 * 19 18 15 42 42 H 1.08999 * 109.47161 * 309.99767 * 20 18 15 43 43 H 1.09003 * 109.47038 * 69.99459 * 20 18 15 44 44 H 0.97005 * 120.00633 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0057 5 6 1.9224 3.6057 -0.0008 6 6 3.3031 3.6807 -0.0009 7 7 3.9707 5.0018 -0.0018 8 8 5.1867 5.0697 -0.0024 9 8 3.3038 6.0211 -0.0020 10 6 4.0613 2.5253 -0.0004 11 6 3.4372 1.2864 -0.0004 12 7 4.2039 0.1136 0.0006 13 6 5.3770 0.0748 -0.6619 14 8 5.8083 1.0776 -1.1908 15 6 6.1528 -1.2145 -0.7454 16 1 6.4066 -1.5515 0.2596 17 6 5.3007 -2.2784 -1.4402 18 7 7.3855 -0.9952 -1.5138 19 6 7.0815 -0.5628 -2.8845 20 6 8.2258 -2.2002 -1.5161 21 6 9.5770 -1.8692 -2.0957 22 1 9.7903 -0.8643 -2.4285 23 6 10.5411 -2.8493 -2.1999 24 7 11.7204 -2.5604 -2.7052 25 14 10.1728 -4.5871 -1.6222 26 1 9.6060 -5.3732 -2.7475 27 1 11.4268 -5.2288 -1.1523 28 1 9.1926 -4.5410 -0.5076 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2147 2.3195 -0.0097 33 1 1.3338 4.5112 -0.0011 34 1 5.1396 2.5870 -0.0001 35 1 3.8903 -0.6704 0.4780 36 1 4.3862 -2.4410 -0.8697 37 1 5.0469 -1.9414 -2.4452 38 1 5.8617 -3.2110 -1.5002 39 1 6.5177 0.3696 -2.8546 40 1 8.0116 -0.4081 -3.4313 41 1 6.4896 -1.3294 -3.3844 42 1 8.3469 -2.5607 -0.4946 43 1 7.7507 -2.9733 -2.1202 44 1 12.3989 -3.2498 -2.7782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:47 Heat of formation + Delta-G solvation = -45.560664 kcal Electronic energy + Delta-G solvation = -29457.189174 eV Core-core repulsion = 25185.615208 eV Total energy + Delta-G solvation = -4271.573966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.29138 -42.19385 -40.95011 -38.92307 -38.14266 -37.67058 -36.16765 -34.78077 -32.56197 -32.29215 -30.81833 -29.54449 -28.76067 -27.05618 -26.95894 -25.77428 -24.19655 -23.30162 -22.32244 -21.01871 -20.51377 -19.77279 -19.35403 -19.08702 -18.62062 -18.23112 -17.92640 -17.22009 -16.92495 -16.60156 -16.33949 -16.10298 -15.62331 -15.58956 -15.28774 -14.94614 -14.73971 -14.49693 -14.37143 -14.17354 -13.70588 -13.42268 -13.17990 -12.93725 -12.81835 -12.74788 -12.63042 -12.45936 -12.43252 -12.36973 -12.33430 -12.31980 -12.13102 -11.78127 -11.73153 -11.48773 -10.78404 -10.72201 -10.22258 -9.38377 -9.02043 -8.26522 -6.31545 -1.26070 -0.26490 0.22033 0.37467 1.35859 1.37236 1.39659 1.50135 1.65630 1.90399 2.18660 2.36416 3.05684 3.17470 3.28052 3.45049 3.50610 3.58293 3.83510 4.01633 4.08285 4.21239 4.33509 4.35136 4.44077 4.46415 4.51935 4.62056 4.68428 4.70236 4.77701 4.84629 4.85531 4.89793 5.00997 5.15508 5.20756 5.26094 5.31679 5.52797 5.92039 5.98547 6.15385 6.30010 6.46946 6.63418 6.75539 6.99647 7.31645 8.90969 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002915 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.519186 B = 9602.369112 C =11221.610503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.308 6.308 3 C 0.176 3.824 4 C -0.174 4.174 5 C -0.015 4.015 6 C -0.086 4.086 7 N 0.037 4.963 8 O -0.235 6.235 9 O -0.139 6.139 10 C -0.048 4.048 11 C 0.110 3.890 12 N -0.648 5.648 13 C 0.523 3.477 14 O -0.536 6.536 15 C 0.062 3.938 16 H 0.127 0.873 17 C -0.176 4.176 18 N -0.535 5.535 19 C 0.035 3.965 20 C 0.176 3.824 21 C -0.522 4.522 22 H 0.026 0.974 23 C 0.002 3.998 24 N -0.953 5.953 25 Si 0.955 3.045 26 H -0.265 1.265 27 H -0.285 1.285 28 H -0.236 1.236 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.204 0.796 33 H 0.183 0.817 34 H 0.141 0.859 35 H 0.434 0.566 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.040 0.960 43 H 0.002 0.998 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.814 1.451 9.724 36.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.126 3.874 4 C -0.193 4.193 5 C -0.035 4.035 6 C -0.170 4.170 7 N 0.549 4.451 8 O -0.433 6.433 9 O -0.365 6.365 10 C -0.070 4.070 11 C 0.014 3.986 12 N -0.297 5.297 13 C 0.312 3.688 14 O -0.412 6.412 15 C -0.050 4.050 16 H 0.145 0.855 17 C -0.235 4.235 18 N -0.259 5.259 19 C -0.113 4.113 20 C 0.050 3.950 21 C -0.561 4.561 22 H 0.045 0.955 23 C -0.194 4.194 24 N -0.594 5.594 25 Si 0.777 3.223 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.159 1.159 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.221 0.779 33 H 0.200 0.800 34 H 0.159 0.841 35 H 0.274 0.726 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -34.138 1.521 9.516 35.472 hybrid contribution 0.727 -0.710 -0.414 1.097 sum -33.411 0.811 9.103 34.638 Atomic orbital electron populations 1.23690 0.74355 1.06878 1.03701 1.86138 1.25068 1.24385 1.86368 1.19101 0.89405 0.87052 0.91866 1.21514 1.02964 0.88288 1.06548 1.21190 0.89528 1.01624 0.91172 1.20924 0.94148 0.81170 1.20788 1.43845 1.00956 1.03632 0.96649 1.94635 0.96773 1.94374 1.57553 1.94426 1.64749 1.25727 1.51594 1.20791 1.02106 0.89568 0.94491 1.16718 0.88089 0.86180 1.07598 1.43173 1.20328 1.13805 1.52412 1.21094 0.80360 0.90858 0.76527 1.90684 1.67748 1.36924 1.45801 1.21797 0.90238 0.91304 1.01644 0.85548 1.22389 1.01126 0.98416 1.01589 1.61743 1.14653 1.34875 1.14601 1.22342 1.00093 0.99879 0.89007 1.19977 0.91059 0.87414 0.96554 1.21296 0.97754 0.96449 1.40558 0.95527 1.25979 0.94326 1.04217 0.94913 1.70085 1.06085 1.35823 1.47415 0.85609 0.78527 0.78070 0.80072 1.19048 1.21066 1.15942 0.89778 0.90452 0.85689 0.77935 0.79967 0.84122 0.72597 0.87902 0.92576 0.91082 0.90711 0.94165 0.95261 0.94243 0.98022 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.43 10.05 -93.27 -0.94 -3.36 16 3 C 0.18 2.14 6.70 22.60 0.15 2.29 16 4 C -0.17 -1.31 9.04 22.35 0.20 -1.11 16 5 C -0.02 -0.20 9.55 22.28 0.21 0.01 16 6 C -0.09 -2.04 6.85 36.37 0.25 -1.79 16 7 N 0.04 1.11 4.45 -46.47 -0.21 0.91 16 8 O -0.24 -8.72 18.44 18.89 0.35 -8.37 16 9 O -0.14 -3.88 18.44 18.89 0.35 -3.53 16 10 C -0.05 -1.27 8.21 22.38 0.18 -1.09 16 11 C 0.11 2.24 6.32 38.19 0.24 2.48 16 12 N -0.65 -12.94 5.05 -303.13 -1.53 -14.48 16 13 C 0.52 15.34 6.72 87.66 0.59 15.92 16 14 O -0.54 -20.84 11.32 -3.08 -0.03 -20.87 16 15 C 0.06 1.84 2.76 44.17 0.12 1.96 16 16 H 0.13 3.23 8.03 -2.39 -0.02 3.21 16 17 C -0.18 -3.99 8.40 71.98 0.60 -3.38 16 18 N -0.53 -22.71 4.53 -906.02 -4.10 -26.81 16 19 C 0.03 1.48 8.57 127.69 1.09 2.58 16 20 C 0.18 8.22 3.23 85.56 0.28 8.49 16 21 C -0.52 -30.97 9.01 25.60 0.23 -30.74 16 22 H 0.03 1.82 7.37 -2.91 -0.02 1.79 16 23 C 0.00 0.13 5.47 84.65 0.46 0.60 16 24 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 25 Si 0.96 42.94 27.47 68.60 1.88 44.83 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.24 -9.39 6.54 99.48 0.65 -8.73 16 29 H 0.08 -0.36 7.67 -2.39 -0.02 -0.37 16 30 H 0.08 -0.22 7.65 -2.39 -0.02 -0.24 16 31 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.20 -0.39 6.30 -2.91 -0.02 -0.41 16 33 H 0.18 1.47 7.60 -2.91 -0.02 1.45 16 34 H 0.14 4.91 5.74 -2.91 -0.02 4.89 16 35 H 0.43 5.46 8.12 -92.71 -0.75 4.71 16 36 H 0.10 1.41 7.67 -2.38 -0.02 1.39 16 37 H 0.06 1.39 6.39 -2.39 -0.02 1.37 16 38 H 0.07 1.72 6.75 -2.39 -0.02 1.70 16 39 H 0.07 3.17 5.44 -2.39 -0.01 3.16 16 40 H 0.04 1.99 6.76 -2.39 -0.02 1.97 16 41 H 0.03 1.11 6.28 -2.39 -0.02 1.09 16 42 H 0.04 1.75 7.05 -2.39 -0.02 1.74 16 43 H 0.00 0.10 6.37 -2.39 -0.02 0.08 16 44 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -86.48 362.77 2.06 -84.42 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.26 Total: 10.74 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.73 Total: -2.67 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -5.54 Total: -101.17 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.28 Total: -36.14 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Total: -86.48 2.06 -84.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.858 kcal (2) G-P(sol) polarization free energy of solvation -86.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds