Wall clock time and date at job start Tue Mar 31 2020 22:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.46659 * 2 1 4 4 C 1.35972 * 116.99623 * 179.97438 * 3 2 1 5 5 C 1.38743 * 119.98486 * 0.02562 * 4 3 2 6 6 C 1.38065 * 120.01327 * 179.97438 * 5 4 3 7 7 C 1.38867 * 119.98496 * 0.02562 * 6 5 4 8 8 N 1.40115 * 120.01327 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99949 * 25.35576 * 8 7 6 10 10 O 1.21291 * 120.00007 * 5.85654 * 9 8 7 11 11 C 1.50706 * 119.99665 * 185.85619 * 9 8 7 12 12 N 1.46506 * 109.46849 * 180.02562 * 11 9 8 13 13 C 1.36935 * 119.99852 * 270.00234 * 12 11 9 14 14 H 1.08001 * 119.99700 * 204.09163 * 13 12 11 15 15 C 1.38814 * 120.00317 * 24.08973 * 13 12 11 16 16 N 1.31620 * 119.99850 * 5.04621 * 15 13 12 17 17 Si 1.86797 * 119.99998 * 185.05092 * 15 13 12 18 18 H 1.48495 * 109.47321 * 90.00044 * 17 15 13 19 19 H 1.48504 * 109.46721 * 209.99955 * 17 15 13 20 20 H 1.48501 * 109.46916 * 329.99603 * 17 15 13 21 21 C 1.46494 * 119.99832 * 89.99718 * 12 11 9 22 22 C 1.53002 * 109.46844 * 94.98371 * 21 12 11 23 23 C 1.38816 * 119.97360 * 359.97438 * 7 6 5 24 24 N 1.48015 * 120.01197 * 179.97438 * 23 7 6 25 25 O 1.21802 * 120.00427 * 185.45361 * 24 23 7 26 26 O 1.21803 * 119.99487 * 5.45557 * 24 23 7 27 27 C 1.38115 * 119.98204 * 359.75463 * 23 7 6 28 28 H 1.09005 * 109.46620 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46649 * 299.99839 * 1 2 3 30 30 H 1.08991 * 109.47315 * 60.00190 * 1 2 3 31 31 H 1.09002 * 109.46649 * 240.00160 * 2 1 3 32 32 H 1.09005 * 109.47190 * 119.99897 * 2 1 3 33 33 H 1.07993 * 119.99453 * 359.97438 * 5 4 3 34 34 H 1.07998 * 120.00587 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99976 * 205.35931 * 8 7 6 36 36 H 1.09004 * 109.47076 * 299.99955 * 11 9 8 37 37 H 1.08993 * 109.47215 * 60.00313 * 11 9 8 38 38 H 0.96995 * 120.00119 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47515 * 214.98311 * 21 12 11 40 40 H 1.08999 * 109.47423 * 334.98192 * 21 12 11 41 41 H 1.09004 * 109.47030 * 299.99474 * 22 21 12 42 42 H 1.08996 * 109.47471 * 60.00199 * 22 21 12 43 43 H 1.09010 * 109.47360 * 180.02562 * 22 21 12 44 44 H 1.07999 * 119.99013 * 180.25120 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1992 0.4250 0.0005 6 6 5.5680 0.6052 0.0005 7 6 6.0991 1.8883 0.0011 8 7 7.4882 2.0719 0.0006 9 6 8.2942 1.1148 -0.5003 10 8 7.8155 0.1433 -1.0462 11 6 9.7904 1.2520 -0.3819 12 7 10.4374 0.0916 -0.9994 13 6 10.7097 -1.0206 -0.2484 14 1 11.4969 -1.6960 -0.5495 15 6 9.9741 -1.2800 0.8998 16 7 8.9512 -0.5133 1.2133 17 14 10.4360 -2.7171 2.0001 18 1 11.4092 -2.2627 3.0255 19 1 9.2178 -3.2386 2.6706 20 1 11.0479 -3.7926 1.1790 21 6 10.7929 0.1211 -2.4203 22 6 12.2518 0.5564 -2.5720 23 6 5.2532 2.9890 0.0011 24 7 5.8183 4.3570 0.0023 25 8 5.0803 5.3208 0.1026 26 8 7.0215 4.5189 -0.0970 27 6 3.8841 2.8073 -0.0045 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7861 -0.5728 0.0005 34 1 6.2256 -0.2515 0.0001 35 1 7.8697 2.8878 0.3607 36 1 10.1133 2.1607 -0.8900 37 1 10.0682 1.3059 0.6706 38 1 8.4374 -0.6943 2.0158 39 1 10.6641 -0.8732 -2.8479 40 1 10.1469 0.8273 -2.9419 41 1 12.3806 1.5508 -2.1445 42 1 12.8978 -0.1498 -2.0505 43 1 12.5163 0.5789 -3.6293 44 1 3.2259 3.6635 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120990650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:16 Heat of formation + Delta-G solvation = -9.941189 kcal Electronic energy + Delta-G solvation = -30056.347089 eV Core-core repulsion = 25786.317699 eV Total energy + Delta-G solvation = -4270.029389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.05995 -40.33648 -39.15094 -37.33505 -36.43618 -35.55052 -33.71221 -31.99149 -31.96247 -31.64133 -29.69410 -28.70844 -26.89645 -26.00634 -23.88282 -23.81285 -22.92355 -21.76667 -20.80236 -19.63860 -19.26139 -18.51535 -17.65413 -17.25339 -17.03116 -16.64863 -16.32649 -16.29576 -15.47689 -15.11737 -14.23101 -14.00655 -13.98949 -13.75344 -13.58297 -13.40932 -13.15219 -12.84145 -12.73592 -12.50789 -12.37818 -12.24334 -11.78378 -11.41582 -11.32196 -11.27540 -11.13795 -11.06187 -10.97352 -10.93693 -10.83450 -10.54858 -10.35382 -10.04238 -9.90282 -9.59598 -9.46692 -8.90237 -8.52563 -7.57361 -6.92189 -5.98626 -3.38036 0.06492 1.29194 1.55424 1.59055 3.01604 3.28973 3.34986 3.36961 3.41299 3.62823 4.09489 4.41628 4.58357 4.66664 4.70708 4.71718 4.89470 4.99446 5.14625 5.25171 5.29820 5.32625 5.49635 5.51214 5.65537 5.77115 5.93238 6.02452 6.10445 6.17529 6.20920 6.27068 6.47597 6.53514 6.57488 6.68997 6.78439 6.95793 7.04578 7.08334 7.24725 7.63512 7.87401 8.10985 8.26030 9.03274 9.34208 9.67476 10.13858 11.12849 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.003845 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.406813 B = 7281.333970 C = 8791.628339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.091 3.909 5 C -0.131 4.131 6 C -0.094 4.094 7 C 0.233 3.767 8 N -0.671 5.671 9 C 0.535 3.465 10 O -0.506 6.506 11 C 0.175 3.825 12 N -0.574 5.574 13 C -0.240 4.240 14 H 0.075 0.925 15 C 0.004 3.996 16 N -0.915 5.915 17 Si 0.918 3.082 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.143 3.857 22 C -0.165 4.165 23 C -0.073 4.073 24 N 0.050 4.950 25 O -0.170 6.170 26 O -0.182 6.182 27 C -0.080 4.080 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.184 0.816 35 H 0.414 0.586 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.255 0.745 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.039 0.961 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 3.352 -1.694 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.044 3.956 5 C -0.151 4.151 6 C -0.115 4.115 7 C 0.128 3.872 8 N -0.322 5.322 9 C 0.324 3.676 10 O -0.377 6.377 11 C 0.044 3.956 12 N -0.294 5.294 13 C -0.369 4.369 14 H 0.092 0.908 15 C -0.192 4.192 16 N -0.563 5.563 17 Si 0.749 3.251 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.017 3.983 22 C -0.225 4.225 23 C -0.162 4.162 24 N 0.561 4.439 25 O -0.384 6.384 26 O -0.388 6.388 27 C -0.100 4.100 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.201 0.799 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.709 2.077 -1.976 12.054 hybrid contribution 0.300 -0.317 0.993 1.084 sum -11.409 1.759 -0.984 11.585 Atomic orbital electron populations 1.21767 0.92616 1.02880 1.03529 1.22831 0.95937 0.81807 1.01709 1.86046 1.17970 1.29366 1.89426 1.18334 0.83020 0.92521 1.01736 1.21651 0.93908 0.98691 1.00852 1.21701 0.94804 0.97212 0.97783 1.17774 0.85514 0.91340 0.92539 1.45078 1.01978 1.24360 1.60749 1.22575 0.90911 0.80224 0.73900 1.90438 1.75960 1.28844 1.42499 1.20437 0.86186 0.88591 1.00342 1.43749 1.67179 1.13922 1.04515 1.19273 1.12098 1.01260 1.04306 0.90758 1.24920 0.95660 0.98617 1.00023 1.69321 1.20124 1.40424 1.26394 0.86033 0.77113 0.81859 0.80132 1.21529 1.21820 1.20582 1.20795 0.92863 0.99109 0.85512 1.22308 0.99987 1.01113 0.99090 1.20393 0.93351 0.80327 1.22121 1.43354 1.00589 1.02885 0.97035 1.94495 1.58236 1.32027 1.53635 1.94349 0.98001 1.91722 1.54705 1.19591 0.91665 0.96963 1.01772 0.90316 0.91490 0.91486 0.91811 0.91818 0.84065 0.79943 0.74296 0.93989 0.87968 0.93359 0.93566 0.94431 0.93591 0.92965 0.94177 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.47 5.46 37.16 0.20 0.68 16 3 O -0.31 -3.86 10.14 -19.65 -0.20 -4.06 16 4 C 0.09 1.26 6.69 -39.23 -0.26 1.00 16 5 C -0.13 -1.89 9.03 -39.46 -0.36 -2.24 16 6 C -0.09 -1.69 8.71 -39.41 -0.34 -2.03 16 7 C 0.23 4.27 6.41 -83.62 -0.54 3.73 16 8 N -0.67 -12.96 4.86 -9.83 -0.05 -13.01 16 9 C 0.54 11.83 5.39 -10.98 -0.06 11.77 16 10 O -0.51 -12.62 12.80 5.55 0.07 -12.55 16 11 C 0.18 3.83 5.41 -5.19 -0.03 3.80 16 12 N -0.57 -13.43 2.02 -174.61 -0.35 -13.79 16 13 C -0.24 -6.13 9.67 -15.06 -0.15 -6.28 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C 0.00 0.10 5.22 -17.43 -0.09 0.01 16 16 N -0.92 -23.55 7.99 55.49 0.44 -23.11 16 17 Si 0.92 20.87 29.56 -169.99 -5.02 15.84 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.14 2.90 6.39 -4.04 -0.03 2.87 16 22 C -0.17 -2.82 10.21 37.16 0.38 -2.44 16 23 C -0.07 -1.22 6.86 -79.78 -0.55 -1.77 16 24 N 0.05 0.86 4.45 34.04 0.15 1.01 16 25 O -0.17 -2.88 18.46 -29.46 -0.54 -3.43 16 26 O -0.18 -3.21 15.86 -29.46 -0.47 -3.68 16 27 C -0.08 -1.18 9.49 -39.46 -0.37 -1.55 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 32 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.14 1.66 6.29 -52.49 -0.33 1.33 16 34 H 0.18 3.88 5.84 -52.49 -0.31 3.57 16 35 H 0.41 7.42 5.96 -40.82 -0.24 7.18 16 36 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.10 2.37 6.83 -51.93 -0.35 2.01 16 38 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 39 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.15 2.04 7.62 -52.49 -0.40 1.64 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -28.81 369.73 -7.97 -36.78 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.77 Total: 7.52 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.80 Total: 6.89 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.19 Total: -48.89 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.14 Total: -23.71 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.81 -7.97 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120990650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.835 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds