Wall clock time and date at job start Tue Mar 31 2020 22:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.46659 * 2 1 4 4 C 1.35972 * 116.99623 * 179.97438 * 3 2 1 5 5 C 1.38743 * 119.98486 * 0.02562 * 4 3 2 6 6 C 1.38065 * 120.01327 * 179.97438 * 5 4 3 7 7 C 1.38867 * 119.98496 * 0.02562 * 6 5 4 8 8 N 1.40115 * 120.01327 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99949 * 25.35576 * 8 7 6 10 10 O 1.21291 * 120.00007 * 5.85654 * 9 8 7 11 11 C 1.50706 * 119.99665 * 185.85619 * 9 8 7 12 12 N 1.46506 * 109.46849 * 180.02562 * 11 9 8 13 13 C 1.36935 * 119.99852 * 270.00234 * 12 11 9 14 14 H 1.08001 * 119.99700 * 204.09163 * 13 12 11 15 15 C 1.38814 * 120.00317 * 24.08973 * 13 12 11 16 16 N 1.31620 * 119.99850 * 5.04621 * 15 13 12 17 17 Si 1.86797 * 119.99998 * 185.05092 * 15 13 12 18 18 H 1.48495 * 109.47321 * 90.00044 * 17 15 13 19 19 H 1.48504 * 109.46721 * 209.99955 * 17 15 13 20 20 H 1.48501 * 109.46916 * 329.99603 * 17 15 13 21 21 C 1.46494 * 119.99832 * 89.99718 * 12 11 9 22 22 C 1.53002 * 109.46844 * 94.98371 * 21 12 11 23 23 C 1.38816 * 119.97360 * 359.97438 * 7 6 5 24 24 N 1.48015 * 120.01197 * 179.97438 * 23 7 6 25 25 O 1.21802 * 120.00427 * 185.45361 * 24 23 7 26 26 O 1.21803 * 119.99487 * 5.45557 * 24 23 7 27 27 C 1.38115 * 119.98204 * 359.75463 * 23 7 6 28 28 H 1.09005 * 109.46620 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46649 * 299.99839 * 1 2 3 30 30 H 1.08991 * 109.47315 * 60.00190 * 1 2 3 31 31 H 1.09002 * 109.46649 * 240.00160 * 2 1 3 32 32 H 1.09005 * 109.47190 * 119.99897 * 2 1 3 33 33 H 1.07993 * 119.99453 * 359.97438 * 5 4 3 34 34 H 1.07998 * 120.00587 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99976 * 205.35931 * 8 7 6 36 36 H 1.09004 * 109.47076 * 299.99955 * 11 9 8 37 37 H 1.08993 * 109.47215 * 60.00313 * 11 9 8 38 38 H 0.96995 * 120.00119 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47515 * 214.98311 * 21 12 11 40 40 H 1.08999 * 109.47423 * 334.98192 * 21 12 11 41 41 H 1.09004 * 109.47030 * 299.99474 * 22 21 12 42 42 H 1.08996 * 109.47471 * 60.00199 * 22 21 12 43 43 H 1.09010 * 109.47360 * 180.02562 * 22 21 12 44 44 H 1.07999 * 119.99013 * 180.25120 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1992 0.4250 0.0005 6 6 5.5680 0.6052 0.0005 7 6 6.0991 1.8883 0.0011 8 7 7.4882 2.0719 0.0006 9 6 8.2942 1.1148 -0.5003 10 8 7.8155 0.1433 -1.0462 11 6 9.7904 1.2520 -0.3819 12 7 10.4374 0.0916 -0.9994 13 6 10.7097 -1.0206 -0.2484 14 1 11.4969 -1.6960 -0.5495 15 6 9.9741 -1.2800 0.8998 16 7 8.9512 -0.5133 1.2133 17 14 10.4360 -2.7171 2.0001 18 1 11.4092 -2.2627 3.0255 19 1 9.2178 -3.2386 2.6706 20 1 11.0479 -3.7926 1.1790 21 6 10.7929 0.1211 -2.4203 22 6 12.2518 0.5564 -2.5720 23 6 5.2532 2.9890 0.0011 24 7 5.8183 4.3570 0.0023 25 8 5.0803 5.3208 0.1026 26 8 7.0215 4.5189 -0.0970 27 6 3.8841 2.8073 -0.0045 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7861 -0.5728 0.0005 34 1 6.2256 -0.2515 0.0001 35 1 7.8697 2.8878 0.3607 36 1 10.1133 2.1607 -0.8900 37 1 10.0682 1.3059 0.6706 38 1 8.4374 -0.6943 2.0158 39 1 10.6641 -0.8732 -2.8479 40 1 10.1469 0.8273 -2.9419 41 1 12.3806 1.5508 -2.1445 42 1 12.8978 -0.1498 -2.0505 43 1 12.5163 0.5789 -3.6293 44 1 3.2259 3.6635 -0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120990650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:15 Heat of formation + Delta-G solvation = -24.943593 kcal Electronic energy + Delta-G solvation = -30056.997642 eV Core-core repulsion = 25786.317699 eV Total energy + Delta-G solvation = -4270.679942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.42261 -41.59226 -40.54702 -38.69092 -37.80962 -37.21258 -35.20591 -33.77751 -33.05106 -32.68178 -31.23637 -30.08976 -28.49486 -27.43165 -25.51998 -24.82474 -24.22919 -22.91784 -22.41591 -21.25278 -20.48258 -19.88038 -19.14551 -18.67248 -18.27314 -18.17427 -17.85358 -17.16004 -17.10783 -16.57360 -15.81469 -15.67019 -15.34716 -15.17737 -14.94530 -14.73900 -14.48225 -14.11414 -14.06945 -13.51926 -13.46485 -13.37078 -13.17640 -13.06343 -12.80522 -12.71322 -12.63370 -12.38187 -12.33308 -12.29584 -12.16559 -12.12009 -11.88707 -11.80278 -11.53631 -10.97681 -10.81039 -10.67393 -10.29342 -8.91431 -8.74219 -7.90422 -5.31318 -1.25702 0.01071 0.23480 0.26715 1.47075 1.48414 1.55565 1.98002 2.06613 2.21813 2.44334 2.62172 3.30445 3.34829 3.54691 3.59974 3.66334 3.85101 4.04469 4.09471 4.17320 4.33984 4.39963 4.41773 4.57294 4.65206 4.77237 4.81350 4.83569 4.93970 4.94920 4.98390 5.06095 5.09473 5.20419 5.24955 5.27612 5.32278 5.58254 5.63291 5.66928 6.17263 6.30690 6.49439 6.64663 7.13838 7.64739 7.86355 8.26151 9.17041 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.003845 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.406813 B = 7281.333970 C = 8791.628339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 O -0.315 6.315 4 C 0.108 3.892 5 C -0.116 4.116 6 C -0.111 4.111 7 C 0.206 3.794 8 N -0.670 5.670 9 C 0.539 3.461 10 O -0.541 6.541 11 C 0.175 3.825 12 N -0.589 5.589 13 C -0.254 4.254 14 H 0.070 0.930 15 C -0.039 4.039 16 N -0.922 5.922 17 Si 0.972 3.028 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.278 1.278 21 C 0.140 3.860 22 C -0.151 4.151 23 C -0.072 4.072 24 N 0.048 4.952 25 O -0.153 6.153 26 O -0.202 6.202 27 C -0.075 4.075 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.418 0.582 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.032 0.968 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 3.621 -1.879 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 O -0.229 6.229 4 C 0.061 3.939 5 C -0.135 4.135 6 C -0.132 4.132 7 C 0.104 3.896 8 N -0.321 5.321 9 C 0.329 3.671 10 O -0.415 6.415 11 C 0.044 3.956 12 N -0.310 5.310 13 C -0.384 4.384 14 H 0.088 0.912 15 C -0.233 4.233 16 N -0.569 5.569 17 Si 0.802 3.198 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.203 1.203 21 C 0.015 3.985 22 C -0.211 4.211 23 C -0.160 4.160 24 N 0.559 4.441 25 O -0.372 6.372 26 O -0.403 6.403 27 C -0.095 4.095 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.167 0.833 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.415 2.359 -2.173 13.793 hybrid contribution 0.602 -0.364 1.025 1.243 sum -12.813 1.995 -1.148 13.018 Atomic orbital electron populations 1.21801 0.90820 1.04306 1.03504 1.23224 0.97415 0.80292 1.02668 1.86086 1.16410 1.31651 1.88790 1.18301 0.83926 0.91887 0.99823 1.21832 0.92401 1.00395 0.98900 1.21388 0.95905 0.96018 0.99907 1.17860 0.85008 0.92138 0.94617 1.44732 1.02629 1.23854 1.60891 1.22432 0.91202 0.79998 0.73511 1.90418 1.76602 1.30308 1.44211 1.20433 0.86299 0.89262 0.99600 1.43931 1.67655 1.13781 1.05607 1.19434 1.12091 1.01991 1.04843 0.91197 1.25537 0.95993 1.00595 1.01210 1.69501 1.20373 1.40965 1.26049 0.85192 0.76297 0.79687 0.78623 1.21225 1.22709 1.20345 1.20919 0.94970 0.98653 0.83977 1.22135 0.97166 1.00820 1.00943 1.20429 0.93880 0.79594 1.22141 1.43433 1.00575 1.03099 0.96955 1.94473 1.58077 1.32123 1.52556 1.94355 0.98253 1.91828 1.55866 1.19859 0.90912 0.98163 1.00535 0.88176 0.91506 0.91537 0.90900 0.90802 0.81352 0.83330 0.73824 0.91339 0.89762 0.94280 0.94903 0.93980 0.93072 0.93997 0.91260 0.80804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.99 0.74 -0.83 16 2 C 0.04 0.57 5.46 71.99 0.39 0.97 16 3 O -0.32 -6.79 10.14 -93.23 -0.95 -7.73 16 4 C 0.11 2.75 6.69 22.50 0.15 2.90 16 5 C -0.12 -3.17 9.03 22.35 0.20 -2.97 16 6 C -0.11 -4.04 8.71 22.38 0.19 -3.84 16 7 C 0.21 7.66 6.41 38.11 0.24 7.91 16 8 N -0.67 -26.61 4.86 -303.39 -1.47 -28.08 16 9 C 0.54 24.59 5.39 87.66 0.47 25.06 16 10 O -0.54 -27.99 12.80 -3.06 -0.04 -28.03 16 11 C 0.17 7.80 5.41 85.63 0.46 8.26 16 12 N -0.59 -28.07 2.02 -706.33 -1.43 -29.50 16 13 C -0.25 -13.23 9.67 84.03 0.81 -12.42 16 14 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 15 C -0.04 -2.02 5.22 84.86 0.44 -1.58 16 16 N -0.92 -48.85 7.99 21.65 0.17 -48.67 16 17 Si 0.97 43.65 29.56 68.60 2.03 45.68 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.14 5.68 6.39 86.38 0.55 6.23 16 22 C -0.15 -4.98 10.21 71.98 0.74 -4.25 16 23 C -0.07 -2.35 6.86 36.49 0.25 -2.10 16 24 N 0.05 1.61 4.45 -46.20 -0.21 1.40 16 25 O -0.15 -4.92 18.46 18.88 0.35 -4.58 16 26 O -0.20 -7.11 15.86 18.88 0.30 -6.81 16 27 C -0.07 -2.04 9.49 22.35 0.21 -1.83 16 28 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 32 H 0.07 0.99 7.66 -2.38 -0.02 0.97 16 33 H 0.17 3.57 6.29 -2.91 -0.02 3.56 16 34 H 0.15 6.61 5.84 -2.91 -0.02 6.59 16 35 H 0.42 15.43 5.96 -92.71 -0.55 14.88 16 36 H 0.07 2.62 8.07 -2.38 -0.02 2.60 16 37 H 0.08 4.04 6.83 -2.39 -0.02 4.02 16 38 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 39 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.17 4.07 7.62 -2.91 -0.02 4.04 16 Total: -1.00 -62.91 369.73 5.11 -57.80 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.49 Total: 27.02 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 5.87 Total: 21.51 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -2.94 Total: -104.85 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.34 Total: -47.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.91 5.11 -57.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120990650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.853 kcal (2) G-P(sol) polarization free energy of solvation -62.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds