Wall clock time and date at job start Tue Mar 31 2020 21:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99767 * 2 1 4 4 C 1.38743 * 119.98626 * 0.02562 * 3 2 1 5 5 C 1.38064 * 120.01301 * 179.97438 * 4 3 2 6 6 C 1.38865 * 119.98729 * 0.02562 * 5 4 3 7 7 N 1.40115 * 120.01412 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00025 * 35.28164 * 7 6 5 9 9 O 1.21286 * 120.00283 * 355.56230 * 8 7 6 10 10 C 1.50703 * 119.99953 * 175.55379 * 8 7 6 11 11 N 1.46898 * 109.47231 * 180.02562 * 10 8 7 12 12 C 1.46903 * 110.99597 * 66.05395 * 11 10 8 13 13 C 1.46901 * 111.00076 * 189.99985 * 11 10 8 14 14 H 1.08994 * 109.47229 * 300.00708 * 13 11 10 15 15 C 1.52999 * 109.46722 * 60.00204 * 13 11 10 16 16 C 1.50695 * 109.47156 * 180.02562 * 13 11 10 17 17 H 1.08002 * 120.00146 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99985 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00078 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47465 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47152 * 120.00132 * 20 18 16 23 23 H 1.48501 * 109.47397 * 240.00370 * 20 18 16 24 24 C 1.38822 * 119.97219 * 0.25121 * 6 5 4 25 25 N 1.48015 * 120.00927 * 179.72727 * 24 6 5 26 26 O 1.21797 * 119.99870 * 185.43293 * 25 24 6 27 27 O 1.21800 * 119.99717 * 5.43790 * 25 24 6 28 28 C 1.38108 * 119.98123 * 359.51498 * 24 6 5 29 29 H 1.09006 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46775 * 299.99743 * 1 2 3 31 31 H 1.08993 * 109.47628 * 59.99666 * 1 2 3 32 32 H 1.07998 * 119.99286 * 359.97435 * 4 3 2 33 33 H 1.08001 * 120.00337 * 179.97438 * 5 4 3 34 34 H 0.97000 * 119.99801 * 215.28638 * 7 6 5 35 35 H 1.09002 * 109.46668 * 60.00583 * 10 8 7 36 36 H 1.08999 * 109.47199 * 300.00921 * 10 8 7 37 37 H 1.09002 * 109.47035 * 183.95741 * 12 11 10 38 38 H 1.09007 * 109.46922 * 303.94619 * 12 11 10 39 39 H 1.08996 * 109.47575 * 63.95096 * 12 11 10 40 40 H 1.09001 * 109.46803 * 179.97438 * 15 13 11 41 41 H 1.08995 * 109.47277 * 299.99833 * 15 13 11 42 42 H 1.08997 * 109.47356 * 60.00286 * 15 13 11 43 43 H 0.97002 * 119.99882 * 179.97438 * 19 18 16 44 44 H 1.08004 * 119.99602 * 180.21084 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9165 3.6054 0.0011 6 6 3.3032 3.6785 0.0005 7 7 3.9392 4.9269 0.0005 8 6 3.3965 5.9598 0.6751 9 8 2.3179 5.8318 1.2150 10 6 4.1297 7.2737 0.7588 11 7 3.3352 8.2289 1.5426 12 6 3.2272 7.7992 2.9432 13 6 3.8973 9.5828 1.4492 14 1 4.9178 9.5798 1.8322 15 6 3.9029 10.0329 -0.0131 16 6 3.0581 10.5325 2.2644 17 1 2.1937 10.1668 2.7988 18 6 3.3936 11.8684 2.3280 19 7 4.4458 12.3138 1.6769 20 14 2.3529 13.0457 3.3379 21 1 1.2336 12.3009 3.9685 22 1 3.1916 13.6659 4.3949 23 1 1.8062 14.1063 2.4539 24 6 4.0590 2.5141 -0.0058 25 7 5.5372 2.5910 -0.0125 26 8 6.1994 1.5743 -0.1179 27 8 6.0912 3.6711 0.0875 28 6 3.4314 1.2839 -0.0015 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2118 2.3180 0.0005 33 1 1.3278 4.5109 0.0011 34 1 4.7702 5.0479 -0.4850 35 1 4.2849 7.6677 -0.2456 36 1 5.0946 7.1212 1.2424 37 1 2.5764 8.4859 3.4847 38 1 2.8081 6.7937 2.9835 39 1 4.2165 7.7992 3.4006 40 1 4.3197 11.0377 -0.0823 41 1 4.5102 9.3459 -0.6024 42 1 2.8825 10.0360 -0.3962 43 1 4.6817 13.2537 1.7213 44 1 4.0193 0.3778 -0.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129557374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:38 Heat of formation + Delta-G solvation = -16.596863 kcal Electronic energy + Delta-G solvation = -29299.902859 eV Core-core repulsion = 25029.584858 eV Total energy + Delta-G solvation = -4270.318001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.52790 -40.93745 -40.00057 -38.01918 -36.86574 -36.48920 -34.61616 -32.79747 -32.31701 -30.48122 -29.28566 -28.39822 -27.31131 -26.54661 -24.93282 -23.91237 -23.33697 -22.44133 -20.76573 -19.76743 -19.47881 -18.93310 -18.06236 -17.68051 -17.49145 -17.29471 -16.55763 -16.30361 -16.08735 -15.56232 -14.87216 -14.65842 -14.49596 -14.09364 -13.98890 -13.69072 -13.44723 -13.36737 -13.08648 -12.63818 -12.41693 -12.07388 -11.83228 -11.76462 -11.69128 -11.40026 -11.34549 -11.19193 -11.04428 -10.86741 -10.67576 -10.33205 -10.21983 -10.19553 -10.02883 -9.97589 -9.46547 -8.92358 -8.45970 -8.38842 -7.27136 -6.04827 -4.08761 -0.46611 0.63010 1.03648 1.09491 2.50708 2.59056 2.76602 3.01906 3.28631 3.36620 3.41618 4.01026 4.17274 4.25433 4.38758 4.48211 4.62566 4.64133 4.72793 4.95717 4.99425 5.04911 5.20458 5.28191 5.44405 5.52636 5.66161 5.68989 5.78784 6.08066 6.19292 6.29279 6.39860 6.66813 6.73278 6.84097 6.96220 7.06131 7.13445 7.42190 7.43222 7.61643 7.79774 8.04654 8.14200 8.24891 8.50956 8.97650 9.56291 11.02311 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002557 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.342260 B =10947.341678 C =12047.885424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.109 3.891 4 C -0.132 4.132 5 C -0.087 4.087 6 C 0.200 3.800 7 N -0.674 5.674 8 C 0.521 3.479 9 O -0.497 6.497 10 C 0.034 3.966 11 N -0.519 5.519 12 C 0.033 3.967 13 C 0.212 3.788 14 H 0.002 0.998 15 C -0.136 4.136 16 C -0.502 4.502 17 H 0.065 0.935 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.045 4.045 25 N 0.039 4.961 26 O -0.153 6.153 27 O -0.168 6.168 28 C -0.077 4.077 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.423 0.577 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.008 0.992 40 H 0.088 0.912 41 H 0.008 0.992 42 H 0.036 0.964 43 H 0.260 0.740 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 -23.416 -6.308 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.151 4.151 5 C -0.108 4.108 6 C 0.101 3.899 7 N -0.326 5.326 8 C 0.310 3.690 9 O -0.369 6.369 10 C -0.098 4.098 11 N -0.245 5.245 12 C -0.116 4.116 13 C 0.106 3.894 14 H 0.020 0.980 15 C -0.194 4.194 16 C -0.540 4.540 17 H 0.084 0.916 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.132 4.132 25 N 0.556 4.444 26 O -0.370 6.370 27 O -0.378 6.378 28 C -0.097 4.097 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.265 0.735 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.107 0.893 41 H 0.027 0.973 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.744 -23.374 -6.100 25.081 hybrid contribution 0.921 0.814 0.599 1.367 sum -5.824 -22.561 -5.501 23.941 Atomic orbital electron populations 1.23191 0.77417 1.04678 1.01837 1.86106 1.21996 1.25411 1.88794 1.18489 0.90904 0.85129 0.99307 1.21663 1.01503 0.91325 1.00652 1.21331 0.91586 0.99651 0.98201 1.17499 0.91876 0.84012 0.96542 1.44321 1.28583 1.07513 1.52156 1.21519 0.86136 0.85157 0.76213 1.90635 1.20453 1.82168 1.43622 1.22031 0.95226 0.89614 1.02906 1.61941 1.49840 1.02460 1.10230 1.22351 0.99323 1.00620 0.89259 1.19331 0.93623 0.82157 0.94244 0.98036 1.21898 0.99089 1.02315 0.96095 1.21159 1.11888 0.92273 1.28706 0.91644 1.24926 0.95300 0.98201 0.95837 1.69891 1.26006 1.15017 1.42360 0.86440 0.80285 0.80822 0.79875 1.19712 1.21138 1.21020 1.20537 0.79284 0.94947 1.18481 1.43355 1.03013 1.00519 0.97531 1.94542 1.64260 1.25519 1.52681 1.94448 1.73016 1.16433 1.53895 1.19792 0.92510 0.96745 1.00618 0.87604 0.92110 0.92166 0.83216 0.81293 0.73459 0.87174 0.91987 0.90416 0.92338 0.97323 0.89326 0.97339 0.94481 0.92984 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.40 10.50 -19.65 -0.21 -2.61 16 3 C 0.11 0.96 6.69 -39.22 -0.26 0.69 16 4 C -0.13 -1.10 9.03 -39.46 -0.36 -1.46 16 5 C -0.09 -0.95 8.69 -39.41 -0.34 -1.29 16 6 C 0.20 2.44 6.29 -83.62 -0.53 1.91 16 7 N -0.67 -8.67 4.56 -9.83 -0.04 -8.71 16 8 C 0.52 8.16 7.36 -10.99 -0.08 8.07 16 9 O -0.50 -8.87 11.79 5.55 0.07 -8.81 16 10 C 0.03 0.58 5.26 -4.98 -0.03 0.55 16 11 N -0.52 -11.11 4.36 -237.73 -1.04 -12.15 16 12 C 0.03 0.68 8.88 60.07 0.53 1.21 16 13 C 0.21 5.21 2.06 -68.87 -0.14 5.07 16 14 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 15 C -0.14 -3.17 8.77 37.16 0.33 -2.84 16 16 C -0.50 -13.56 7.93 -34.44 -0.27 -13.83 16 17 H 0.07 1.79 6.39 -52.49 -0.34 1.46 16 18 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.05 -0.53 6.86 -79.78 -0.55 -1.08 16 25 N 0.04 0.51 4.45 34.04 0.15 0.67 16 26 O -0.15 -2.03 18.46 -29.46 -0.54 -2.58 16 27 O -0.17 -2.32 16.02 -29.46 -0.47 -2.79 16 28 C -0.08 -0.76 9.49 -39.46 -0.37 -1.13 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 32 H 0.15 0.82 6.29 -52.49 -0.33 0.49 16 33 H 0.17 2.03 6.24 -52.49 -0.33 1.70 16 34 H 0.42 4.88 6.51 -40.82 -0.27 4.61 16 35 H 0.11 1.75 5.83 -51.93 -0.30 1.45 16 36 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 37 H 0.08 1.71 6.23 -51.93 -0.32 1.38 16 38 H 0.06 1.15 5.83 -51.93 -0.30 0.84 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 41 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.16 1.41 7.62 -52.48 -0.40 1.01 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -31.20 362.26 -7.46 -38.66 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.27 Total: 2.62 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.17 Total: -1.55 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.30 Total: -44.55 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -1.16 Total: -16.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.20 -7.46 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129557374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.067 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds