Wall clock time and date at job start Tue Mar 31 2020 21:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99767 * 2 1 4 4 C 1.38743 * 119.98626 * 0.02562 * 3 2 1 5 5 C 1.38064 * 120.01301 * 179.97438 * 4 3 2 6 6 C 1.38865 * 119.98729 * 0.02562 * 5 4 3 7 7 N 1.40115 * 120.01412 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00025 * 35.28164 * 7 6 5 9 9 O 1.21286 * 120.00283 * 355.56230 * 8 7 6 10 10 C 1.50703 * 119.99953 * 175.55379 * 8 7 6 11 11 N 1.46898 * 109.47231 * 180.02562 * 10 8 7 12 12 C 1.46903 * 110.99597 * 66.05395 * 11 10 8 13 13 C 1.46901 * 111.00076 * 189.99985 * 11 10 8 14 14 H 1.08994 * 109.47229 * 300.00708 * 13 11 10 15 15 C 1.52999 * 109.46722 * 60.00204 * 13 11 10 16 16 C 1.50695 * 109.47156 * 180.02562 * 13 11 10 17 17 H 1.08002 * 120.00146 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99985 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00078 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47465 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47152 * 120.00132 * 20 18 16 23 23 H 1.48501 * 109.47397 * 240.00370 * 20 18 16 24 24 C 1.38822 * 119.97219 * 0.25121 * 6 5 4 25 25 N 1.48015 * 120.00927 * 179.72727 * 24 6 5 26 26 O 1.21797 * 119.99870 * 185.43293 * 25 24 6 27 27 O 1.21800 * 119.99717 * 5.43790 * 25 24 6 28 28 C 1.38108 * 119.98123 * 359.51498 * 24 6 5 29 29 H 1.09006 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46775 * 299.99743 * 1 2 3 31 31 H 1.08993 * 109.47628 * 59.99666 * 1 2 3 32 32 H 1.07998 * 119.99286 * 359.97435 * 4 3 2 33 33 H 1.08001 * 120.00337 * 179.97438 * 5 4 3 34 34 H 0.97000 * 119.99801 * 215.28638 * 7 6 5 35 35 H 1.09002 * 109.46668 * 60.00583 * 10 8 7 36 36 H 1.08999 * 109.47199 * 300.00921 * 10 8 7 37 37 H 1.09002 * 109.47035 * 183.95741 * 12 11 10 38 38 H 1.09007 * 109.46922 * 303.94619 * 12 11 10 39 39 H 1.08996 * 109.47575 * 63.95096 * 12 11 10 40 40 H 1.09001 * 109.46803 * 179.97438 * 15 13 11 41 41 H 1.08995 * 109.47277 * 299.99833 * 15 13 11 42 42 H 1.08997 * 109.47356 * 60.00286 * 15 13 11 43 43 H 0.97002 * 119.99882 * 179.97438 * 19 18 16 44 44 H 1.08004 * 119.99602 * 180.21084 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9165 3.6054 0.0011 6 6 3.3032 3.6785 0.0005 7 7 3.9392 4.9269 0.0005 8 6 3.3965 5.9598 0.6751 9 8 2.3179 5.8318 1.2150 10 6 4.1297 7.2737 0.7588 11 7 3.3352 8.2289 1.5426 12 6 3.2272 7.7992 2.9432 13 6 3.8973 9.5828 1.4492 14 1 4.9178 9.5798 1.8322 15 6 3.9029 10.0329 -0.0131 16 6 3.0581 10.5325 2.2644 17 1 2.1937 10.1668 2.7988 18 6 3.3936 11.8684 2.3280 19 7 4.4458 12.3138 1.6769 20 14 2.3529 13.0457 3.3379 21 1 1.2336 12.3009 3.9685 22 1 3.1916 13.6659 4.3949 23 1 1.8062 14.1063 2.4539 24 6 4.0590 2.5141 -0.0058 25 7 5.5372 2.5910 -0.0125 26 8 6.1994 1.5743 -0.1179 27 8 6.0912 3.6711 0.0875 28 6 3.4314 1.2839 -0.0015 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2118 2.3180 0.0005 33 1 1.3278 4.5109 0.0011 34 1 4.7702 5.0479 -0.4850 35 1 4.2849 7.6677 -0.2456 36 1 5.0946 7.1212 1.2424 37 1 2.5764 8.4859 3.4847 38 1 2.8081 6.7937 2.9835 39 1 4.2165 7.7992 3.4006 40 1 4.3197 11.0377 -0.0823 41 1 4.5102 9.3459 -0.6024 42 1 2.8825 10.0360 -0.3962 43 1 4.6817 13.2537 1.7213 44 1 4.0193 0.3778 -0.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129557374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:33 Heat of formation + Delta-G solvation = -36.662119 kcal Electronic energy + Delta-G solvation = -29300.772953 eV Core-core repulsion = 25029.584858 eV Total energy + Delta-G solvation = -4271.188096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.50048 -41.87607 -40.93836 -39.02737 -38.05128 -37.83156 -35.65788 -34.75250 -33.14238 -31.53388 -31.01010 -29.58947 -28.12499 -27.42610 -26.79913 -25.37172 -24.46847 -23.34853 -22.07785 -21.12164 -20.57990 -19.93236 -19.06846 -18.65769 -18.60636 -18.16312 -18.13377 -17.26624 -17.06251 -16.78741 -16.38531 -15.88604 -15.51835 -15.45178 -15.34338 -15.03860 -14.43497 -14.34653 -14.18955 -14.00791 -13.62048 -13.48211 -12.96968 -12.86997 -12.82386 -12.70806 -12.58850 -12.49700 -12.42781 -12.39094 -12.23463 -12.10040 -11.98743 -11.91642 -11.24777 -10.98440 -10.87017 -10.67242 -10.50735 -9.22820 -8.99657 -8.11515 -6.22047 -1.38773 -0.18106 0.12263 0.18034 1.34394 1.41564 1.43895 1.55003 1.62483 2.11834 2.17195 2.43353 3.16288 3.17453 3.30919 3.43915 3.53142 3.73106 3.75545 4.08218 4.25179 4.33267 4.38580 4.40835 4.43479 4.53891 4.65233 4.69153 4.77364 4.81586 4.89394 4.92209 5.02628 5.04681 5.13076 5.24453 5.31003 5.49533 5.71108 5.75661 6.07534 6.09197 6.25836 6.31982 6.39112 6.63810 6.88327 6.93179 7.46612 8.94671 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002557 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.342260 B =10947.341678 C =12047.885424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.121 3.879 4 C -0.115 4.115 5 C -0.093 4.093 6 C 0.178 3.822 7 N -0.663 5.663 8 C 0.530 3.470 9 O -0.522 6.522 10 C 0.031 3.969 11 N -0.529 5.529 12 C 0.042 3.958 13 C 0.216 3.784 14 H -0.027 1.027 15 C -0.125 4.125 16 C -0.519 4.519 17 H 0.056 0.944 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.279 1.279 24 C -0.050 4.050 25 N 0.039 4.961 26 O -0.156 6.156 27 O -0.190 6.190 28 C -0.079 4.079 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.428 0.572 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.007 0.993 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 -25.298 -6.689 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.073 3.927 4 C -0.134 4.134 5 C -0.114 4.114 6 C 0.080 3.920 7 N -0.315 5.315 8 C 0.319 3.681 9 O -0.396 6.396 10 C -0.100 4.100 11 N -0.254 5.254 12 C -0.107 4.107 13 C 0.110 3.890 14 H -0.010 1.010 15 C -0.183 4.183 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.205 1.205 24 C -0.137 4.137 25 N 0.553 4.447 26 O -0.374 6.374 27 O -0.396 6.396 28 C -0.099 4.099 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.200 0.800 33 H 0.177 0.823 34 H 0.272 0.728 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.280 -25.278 -6.498 27.382 hybrid contribution 1.321 1.170 0.681 1.892 sum -6.959 -24.108 -5.818 25.758 Atomic orbital electron populations 1.23560 0.75252 1.06518 1.03016 1.86126 1.24186 1.24584 1.88252 1.18513 0.90542 0.85841 0.97775 1.21947 1.03087 0.90013 0.98386 1.21306 0.90957 1.00362 0.98771 1.17635 0.92494 0.83467 0.98451 1.44008 1.28551 1.07411 1.51544 1.21035 0.85611 0.85167 0.76333 1.90624 1.21357 1.82634 1.45034 1.22071 0.95276 0.89783 1.02825 1.61809 1.50645 1.02088 1.10888 1.22241 0.98860 1.00611 0.88947 1.19129 0.91681 0.83760 0.94437 1.00957 1.21712 0.99118 1.01646 0.95828 1.21415 1.11927 0.93199 1.29184 0.92588 1.25647 0.96376 0.99668 0.96834 1.70002 1.27104 1.15364 1.43239 0.85504 0.78814 0.78773 0.78514 1.19497 1.20724 1.20494 1.20568 0.78127 0.95525 1.19444 1.43568 1.03716 1.00262 0.97153 1.94523 1.64844 1.25474 1.52596 1.94439 1.73602 1.16624 1.54913 1.19987 0.93363 0.96367 1.00146 0.85670 0.91143 0.90681 0.79972 0.82317 0.72840 0.85961 0.91066 0.92254 0.91135 0.97441 0.91822 0.94114 0.94987 0.92870 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.16 16 2 O -0.32 -3.90 10.50 -93.24 -0.98 -4.88 16 3 C 0.12 1.79 6.69 22.50 0.15 1.94 16 4 C -0.12 -1.59 9.03 22.35 0.20 -1.39 16 5 C -0.09 -1.89 8.69 22.38 0.19 -1.69 16 6 C 0.18 4.16 6.29 38.11 0.24 4.40 16 7 N -0.66 -16.70 4.56 -303.40 -1.38 -18.09 16 8 C 0.53 16.32 7.36 87.66 0.65 16.97 16 9 O -0.52 -18.40 11.79 -3.05 -0.04 -18.43 16 10 C 0.03 1.06 5.26 85.56 0.45 1.51 16 11 N -0.53 -22.76 4.36 -906.04 -3.95 -26.71 16 12 C 0.04 1.74 8.88 127.69 1.13 2.88 16 13 C 0.22 10.80 2.06 44.17 0.09 10.89 16 14 H -0.03 -1.48 8.14 -2.39 -0.02 -1.50 16 15 C -0.12 -5.84 8.77 71.98 0.63 -5.21 16 16 C -0.52 -28.51 7.93 25.60 0.20 -28.30 16 17 H 0.06 3.12 6.39 -2.91 -0.02 3.10 16 18 C 0.01 0.75 5.30 84.66 0.45 1.19 16 19 N -0.92 -51.93 11.32 21.45 0.24 -51.68 16 20 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 C -0.05 -1.11 6.86 36.49 0.25 -0.86 16 25 N 0.04 1.01 4.45 -46.20 -0.21 0.81 16 26 O -0.16 -4.06 18.46 18.89 0.35 -3.72 16 27 O -0.19 -5.24 16.02 18.89 0.30 -4.93 16 28 C -0.08 -1.41 9.49 22.35 0.21 -1.19 16 29 H 0.13 0.09 8.14 -2.38 -0.02 0.07 16 30 H 0.07 0.20 7.66 -2.39 -0.02 0.19 16 31 H 0.07 0.14 7.66 -2.39 -0.02 0.12 16 32 H 0.18 1.26 6.29 -2.91 -0.02 1.24 16 33 H 0.16 3.64 6.24 -2.91 -0.02 3.62 16 34 H 0.43 9.71 6.51 -92.71 -0.60 9.11 16 35 H 0.12 3.77 5.83 -2.39 -0.01 3.75 16 36 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 37 H 0.06 2.66 6.23 -2.39 -0.01 2.64 16 38 H 0.07 2.77 5.83 -2.38 -0.01 2.75 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 41 H 0.04 1.59 6.20 -2.39 -0.01 1.57 16 42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.17 2.68 7.62 -2.91 -0.02 2.65 16 Total: -1.00 -67.53 362.26 2.79 -64.73 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.46 Total: 14.90 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.97 Total: 2.29 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -5.30 Total: -95.67 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.36 Total: -31.96 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.53 2.79 -64.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129557374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds