Wall clock time and date at job start Tue Mar 31 2020 21:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35969 * 117.00414 * 2 1 4 4 C 1.38740 * 119.98246 * 359.97438 * 3 2 1 5 5 C 1.38066 * 120.01294 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.98573 * 359.97438 * 5 4 3 7 7 N 1.40118 * 120.01690 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99746 * 334.72973 * 7 6 5 9 9 O 1.21294 * 119.99629 * 354.45036 * 8 7 6 10 10 C 1.50696 * 119.99602 * 174.44901 * 8 7 6 11 11 N 1.46905 * 109.46588 * 179.97438 * 10 8 7 12 12 C 1.46902 * 111.00180 * 293.95275 * 11 10 8 13 13 C 1.46900 * 110.99532 * 170.00196 * 11 10 8 14 14 H 1.08997 * 109.47868 * 59.99941 * 13 11 10 15 15 C 1.53007 * 109.47277 * 299.99763 * 13 11 10 16 16 C 1.50705 * 109.46870 * 179.97438 * 13 11 10 17 17 H 1.07994 * 119.99910 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99745 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00199 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99724 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47218 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47366 * 300.00629 * 20 18 16 23 23 H 1.48502 * 109.47007 * 60.00693 * 20 18 16 24 24 C 1.38824 * 119.96935 * 0.25782 * 6 5 4 25 25 N 1.48022 * 120.00698 * 179.72429 * 24 6 5 26 26 O 1.21806 * 119.99914 * 184.93844 * 25 24 6 27 27 O 1.21801 * 119.99995 * 4.94100 * 25 24 6 28 28 C 1.38109 * 119.98768 * 359.51123 * 24 6 5 29 29 H 1.09001 * 109.47436 * 300.00521 * 1 2 3 30 30 H 1.09004 * 109.46957 * 59.99851 * 1 2 3 31 31 H 1.08996 * 109.47548 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99401 * 359.97438 * 4 3 2 33 33 H 1.08008 * 120.00728 * 179.97438 * 5 4 3 34 34 H 0.96998 * 119.99688 * 154.73010 * 7 6 5 35 35 H 1.09003 * 109.47151 * 60.00239 * 10 8 7 36 36 H 1.09001 * 109.47306 * 299.99633 * 10 8 7 37 37 H 1.08997 * 109.46975 * 296.04841 * 12 11 10 38 38 H 1.08997 * 109.46795 * 56.04764 * 12 11 10 39 39 H 1.08999 * 109.47111 * 176.05032 * 12 11 10 40 40 H 1.08997 * 109.46927 * 180.02562 * 15 13 11 41 41 H 1.08995 * 109.47001 * 300.00319 * 15 13 11 42 42 H 1.09003 * 109.46749 * 60.00093 * 15 13 11 43 43 H 0.97000 * 120.00003 * 179.97438 * 19 18 16 44 44 H 1.07995 * 119.99677 * 180.21586 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2905 2.3748 -0.0005 5 6 1.9167 3.6053 -0.0011 6 6 3.3034 3.6783 -0.0005 7 7 3.9396 4.9267 -0.0016 8 6 3.3053 6.0058 -0.5014 9 8 2.2264 5.8792 -1.0409 10 6 3.9367 7.3696 -0.3897 11 7 3.0545 8.3694 -1.0062 12 6 2.9446 8.1527 -2.4550 13 6 3.5166 9.7323 -0.7114 14 1 4.5248 9.8670 -1.1030 15 6 3.5242 9.9519 0.8028 16 6 2.5895 10.7283 -1.3592 17 1 1.7421 10.3833 -1.9329 18 6 2.8232 12.0799 -1.2194 19 7 3.8554 12.5000 -0.5212 20 14 1.6744 13.3144 -2.0231 21 1 2.1415 14.6922 -1.7249 22 1 1.6686 13.1013 -3.4927 23 1 0.3003 13.1311 -1.4908 24 6 4.0591 2.5138 -0.0049 25 7 5.5373 2.5906 -0.0105 26 8 6.1997 1.5728 -0.1051 27 8 6.0913 3.6716 0.0796 28 6 3.4315 1.2835 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2119 2.3180 -0.0014 33 1 1.3281 4.5109 -0.0019 34 1 4.8365 5.0142 0.3573 35 1 4.8982 7.3680 -0.9032 36 1 4.0866 7.6157 0.6615 37 1 3.9198 8.2993 -2.9193 38 1 2.6007 7.1361 -2.6452 39 1 2.2318 8.8621 -2.8755 40 1 3.8667 10.9633 1.0215 41 1 2.5160 9.8174 1.1945 42 1 4.1950 9.2315 1.2710 43 1 4.0200 13.4509 -0.4232 44 1 4.0192 0.3776 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129557569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:46 Heat of formation + Delta-G solvation = -14.385185 kcal Electronic energy + Delta-G solvation = -29275.955082 eV Core-core repulsion = 25005.732986 eV Total energy + Delta-G solvation = -4270.222096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.57423 -40.96166 -40.02784 -38.01295 -36.93189 -36.51439 -34.63846 -32.81494 -32.30185 -30.49596 -29.29958 -28.40632 -27.31245 -26.55820 -24.94409 -23.94002 -23.37494 -22.50324 -20.76680 -19.74484 -19.49759 -18.96986 -17.98524 -17.82503 -17.48113 -17.36915 -16.50113 -16.28585 -16.05444 -15.60654 -14.93025 -14.66459 -14.48383 -14.12782 -13.98570 -13.70123 -13.48644 -13.38218 -13.07304 -12.63928 -12.45743 -12.09690 -11.82789 -11.79533 -11.69648 -11.42037 -11.37973 -11.21044 -11.02938 -10.88445 -10.72538 -10.44548 -10.23274 -10.20836 -10.03326 -9.97841 -9.46103 -8.95540 -8.46322 -8.31654 -7.29546 -6.05519 -4.09770 -0.47157 0.65159 1.03327 1.06772 2.47393 2.59340 2.76608 3.04218 3.30846 3.35007 3.38304 3.99776 4.18593 4.25396 4.37808 4.48694 4.63894 4.65712 4.72346 4.95139 4.97312 5.04775 5.22534 5.27199 5.43999 5.53617 5.62932 5.69433 5.76831 6.08378 6.17825 6.26286 6.37643 6.69166 6.71970 6.82285 6.94917 7.04686 7.13376 7.39410 7.41643 7.59836 7.78296 8.00793 8.11732 8.23464 8.49233 8.95916 9.55186 11.01530 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.002554 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.480800 B =10962.612166 C =12098.689630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.104 3.896 4 C -0.127 4.127 5 C -0.099 4.099 6 C 0.207 3.793 7 N -0.672 5.672 8 C 0.518 3.482 9 O -0.493 6.493 10 C 0.033 3.967 11 N -0.519 5.519 12 C 0.032 3.968 13 C 0.212 3.788 14 H 0.002 0.998 15 C -0.136 4.136 16 C -0.504 4.504 17 H 0.064 0.936 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.278 1.278 23 H -0.276 1.276 24 C -0.053 4.053 25 N 0.043 4.957 26 O -0.146 6.146 27 O -0.180 6.180 28 C -0.074 4.074 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.176 0.824 34 H 0.427 0.573 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.008 0.992 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.036 0.964 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 -23.720 3.380 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.057 3.943 4 C -0.147 4.147 5 C -0.119 4.119 6 C 0.106 3.894 7 N -0.327 5.327 8 C 0.307 3.693 9 O -0.366 6.366 10 C -0.099 4.099 11 N -0.245 5.245 12 C -0.116 4.116 13 C 0.107 3.893 14 H 0.020 0.980 15 C -0.194 4.194 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.141 4.141 25 N 0.558 4.442 26 O -0.366 6.366 27 O -0.385 6.385 28 C -0.094 4.094 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.168 0.832 33 H 0.193 0.807 34 H 0.273 0.727 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.248 -23.686 3.264 24.479 hybrid contribution 0.858 0.928 -0.556 1.381 sum -4.390 -22.758 2.707 23.335 Atomic orbital electron populations 1.23184 0.77463 1.04640 1.01821 1.86099 1.21947 1.25418 1.88897 1.18472 0.90893 0.85131 0.99843 1.21678 1.01505 0.91296 1.00174 1.21473 0.91512 1.00027 0.98913 1.17583 0.92101 0.83964 0.95707 1.44693 1.21698 1.05383 1.60909 1.21566 0.85518 0.86141 0.76068 1.90606 1.20803 1.85411 1.39770 1.22050 0.95515 0.88593 1.03698 1.61952 1.47726 1.03660 1.11120 1.22356 0.99680 1.01436 0.88120 1.19327 0.94560 0.81879 0.93519 0.98038 1.21903 0.98578 1.02120 0.96815 1.21081 1.11348 0.90038 1.31777 0.91742 1.24921 0.95496 0.98376 0.95394 1.69867 1.28039 1.14957 1.40404 0.86549 0.81068 0.79984 0.79747 1.21343 1.20320 1.20191 1.20410 0.79007 0.94893 1.19761 1.43358 1.03064 1.00388 0.97353 1.94545 1.64316 1.25285 1.52456 1.94313 1.72758 1.16412 1.55013 1.19758 0.92502 0.96638 1.00478 0.92191 0.92137 0.87635 0.83210 0.80707 0.72730 0.92133 0.86997 0.97309 0.92313 0.90375 0.89310 0.94464 0.97345 0.92850 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.44 10.50 -19.64 -0.21 -2.64 16 3 C 0.10 0.92 6.69 -39.23 -0.26 0.66 16 4 C -0.13 -1.09 9.03 -39.46 -0.36 -1.44 16 5 C -0.10 -1.10 8.71 -39.41 -0.34 -1.45 16 6 C 0.21 2.56 6.41 -83.62 -0.54 2.02 16 7 N -0.67 -8.80 4.97 -9.83 -0.05 -8.85 16 8 C 0.52 8.09 7.32 -10.99 -0.08 8.01 16 9 O -0.49 -8.72 11.52 5.55 0.06 -8.66 16 10 C 0.03 0.56 5.27 -4.98 -0.03 0.53 16 11 N -0.52 -11.02 4.36 -237.72 -1.04 -12.06 16 12 C 0.03 0.66 8.88 60.07 0.53 1.19 16 13 C 0.21 5.20 2.06 -68.86 -0.14 5.06 16 14 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 15 C -0.14 -3.16 8.77 37.16 0.33 -2.84 16 16 C -0.50 -13.56 7.93 -34.44 -0.27 -13.83 16 17 H 0.06 1.75 6.39 -52.49 -0.34 1.41 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.05 -0.62 6.86 -79.78 -0.55 -1.17 16 25 N 0.04 0.56 4.45 34.05 0.15 0.72 16 26 O -0.15 -1.94 18.46 -29.46 -0.54 -2.48 16 27 O -0.18 -2.44 15.81 -29.46 -0.47 -2.91 16 28 C -0.07 -0.73 9.49 -39.46 -0.37 -1.11 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.15 0.86 6.29 -52.48 -0.33 0.53 16 33 H 0.18 2.19 5.82 -52.48 -0.31 1.89 16 34 H 0.43 5.14 5.75 -40.82 -0.23 4.90 16 35 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.11 1.78 5.83 -51.93 -0.30 1.48 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.06 1.13 5.82 -51.93 -0.30 0.83 16 39 H 0.08 1.70 6.23 -51.93 -0.32 1.37 16 40 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.01 0.16 6.20 -51.93 -0.32 -0.17 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.16 1.40 7.62 -52.49 -0.40 1.00 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -30.72 361.12 -7.44 -38.16 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.21 Total: 3.24 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.19 Total: -1.76 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.31 Total: -44.47 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.15 Total: -16.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.72 -7.44 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129557569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.776 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds